BAC Information

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BAC

Clone NameB6Ng01-134I13
Chromosome4 (Build37)
Map Location 135,754,541 - 135,915,196
singlet/doubletdoublet
Overlap geneDdefl1, Tcea3, Zfp46, Hnrpr
Upstream geneClic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2
Downstream geneHtr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134I13.bB6Ng01-134I13.g
ACCDH934806DH934807
length9951,172
definitionDH934806|Mus musculus domesticus DNA, BAC clone: B6Ng01-134I13, 5' end.DH934807|Mus musculus domesticus DNA, BAC clone: B6Ng01-134I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,914,197 - 135,915,196)(135,754,541 - 135,755,714)
sequence
gaattctagggaaagtctcagcagtcagttgaccgtgttttaacagcgaa
agacaaactcctcccctgtcccgagtccacattctaaagagaaagtgccc
ccttgttccagatcttttaagtctgtgcctggggaaaggaggaggttagt
atgcgaactgaacgtcttaagagagaccggcttagagtcaaaaaaggaat
ttctgactttgaaaaccccaagctactgctacattaattaactttcatca
ctaattggacattcctactttctcttccttcctttttgttttctttttga
gtgctaactgtgcagctctggatagcttggaacttgctatgaagagcagg
cttgtcttgagcatcaagtgacctgcctgcctctgcctcctgagcataaa
aaggtgtgctgttacacctggcagttctttctttctttttttaaacaaat
acaagtttttattacgaacctgaatgttttgggggtacttactgcaggta
ctacacatgtattatcataaccaaataaagagtgcatgttctgcctgtgt
tcaaatattgttcctacatcactgttacacatactcaggtcaattttgtt
agcttctctgctggtcttgaaatattacatgtaagactcttatagtccct
gaaacaagaaagatctagaaaatgttacccatacaaacccacataggcgt
gcgtgtgtccattgtaggagactaacagatggtgcaaggctggcttcaag
ctcttgatactcctgcctcagcctctcgagtgctggattacaagtgtaca
actcacattgctagacattccatttagaatgtgtagtcaggttagcatat
gtagggtagattgctagtaaaacatttagccactcccttttttttggggg
gaaggggagttcgagacagggtttctctgtgtagccttggtatcctggaa
tccctttggtaacaggctggctccaaaccaaaaatcgcctgcctc
gaattcaagcgtgagcatatgaatcaggccaggatccatcagcagttggg
cagcgccagcatcggaccctgggttccattgcctgaaccttcccctgtag
taaaggaagacaaaaaacaaacacaaaaaacaacaaaaaccaaaccaaaa
caaaaaaacgctgcttgcctaagacctgtgaaattttgactcttctgagc
aagggtcattcatttatcagacatttatggatgggagcatctatgccgtg
ccagggtggggtcttcttccgggtccacactgcacacctgctttcagctc
ttgcttccttgttgccggagcggggagggaacagcccagccagcctttcc
tgttggcagtggacccctgggtacctgaagctctggttaagttcaaggtc
aaagaccgaagagtgaccacttgtcagggctctgcaggaggctttttgtt
ctgtctgtctattcagatgtttagtcatgcaattgtaagatactgactgg
ggctggtgagaagtctcagcgggtaagagcactgaaggctcttctgaagg
tcctgagttcaaatcccagaaaccacgtggtggctcacaaccatctgtaa
tgggatctgatgccctcttctggtgtgtctgaagacaacgatggtgtatt
cacatacataaaataaataaatcttaaaaacaaacagggctggagagatg
gctcaatggttaagagcactgattgctcttccacaggtcctgagttcaat
tcccagcaaccacatggtggctcacaaccatctgtaatgagattcgatgc
cctcttctggtgtgtctgaatgcagcaacagtgtactcacatatattaaa
taaataaatctttaaacaaacaaaattatattaaaatctgaggtgtttct
ggccaagctggcgagtgatgcattgtgggacttacttcacagccatgcat
gacagtgcatgacagtgaacttttatctgaaccatcttcttaacttttgt
aagtggctgcacttaaaggttttctgttttacagaaacaataatattggc
ttatttacagaaaacagtaaaacagaaaccaggtggaacgcttcacacca
aatggccccagagttgatatggtgtcagcaatggttgcgaggcagaggga
gatgtccgggggatcttttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135914197_135915196
seq2: B6Ng01-134I13.b_46_1040 (reverse)

seq1  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  50
      ||||||||| ||||| || ||| |  |||||||| ||   ||||| || |
seq2  GAGGCAGGC-GATTTTTG-GTTTGGAGCCAGCCT-GTTACCAAAGGGA-T  46

seq1  TCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAACTCCCCTTC  100
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATA-CCAAGGCTACACAGAGAAACCCTGTCTCGAACTCCCCTTC  95

seq1  CCCCCAAAAAAAAGGGAGTGGCTAAATGTTTTACTAGCAATCTACCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAAAAAAGGGAGTGGCTAAATGTTTTACTAGCAATCTACCCTAC  145

seq1  ATATGCTAACCTGACTACACATTCTAAATGGAATGTCTAGCAATGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAACCTGACTACACATTCTAAATGGAATGTCTAGCAATGTGAGT  195

seq1  TGTACACTTGTAATCCAGCACTCGAGAGGCTGAGGCAGGAGTATCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTTGTAATCCAGCACTCGAGAGGCTGAGGCAGGAGTATCAAGAG  245

seq1  CTTGAAGCCAGCCTTGCACCATCTGTTAGTCTCCTACAATGGACACACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCCAGCCTTGCACCATCTGTTAGTCTCCTACAATGGACACACGC  295

seq1  ACGCCTATGTGGGTTTGTATGGGTAACATTTTCTAGATCTTTCTTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTATGTGGGTTTGTATGGGTAACATTTTCTAGATCTTTCTTGTTTC  345

seq1  AGGGACTATAAGAGTCTTACATGTAATATTTCAAGACCAGCAGAGAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTATAAGAGTCTTACATGTAATATTTCAAGACCAGCAGAGAAGCT  395

seq1  AACAAAATTGACCTGAGTATGTGTAACAGTGATGTAGGAACAATATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTGACCTGAGTATGTGTAACAGTGATGTAGGAACAATATTTGA  445

seq1  ACACAGGCAGAACATGCACTCTTTATTTGGTTATGATAATACATGTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCAGAACATGCACTCTTTATTTGGTTATGATAATACATGTGTAG  495

seq1  TACCTGCAGTAAGTACCCCCAAAACATTCAGGTTCGTAATAAAAACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCAGTAAGTACCCCCAAAACATTCAGGTTCGTAATAAAAACTTGT  545

seq1  ATTTGTTTAAAAAAAGAAAGAAAGAACTGCCAGGTGTAACAGCACACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAAAAAAAGAAAGAAAGAACTGCCAGGTGTAACAGCACACCTT  595

seq1  TTTATGCTCAGGAGGCAGAGGCAGGCAGGTCACTTGATGCTCAAGACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTCAGGAGGCAGAGGCAGGCAGGTCACTTGATGCTCAAGACAAG  645

seq1  CCTGCTCTTCATAGCAAGTTCCAAGCTATCCAGAGCTGCACAGTTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTTCATAGCAAGTTCCAAGCTATCCAGAGCTGCACAGTTAGCAC  695

seq1  TCAAAAAGAAAACAAAAAGGAAGGAAGAGAAAGTAGGAATGTCCAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAAAACAAAAAGGAAGGAAGAGAAAGTAGGAATGTCCAATTAG  745

seq1  TGATGAAAGTTAATTAATGTAGCAGTAGCTTGGGGTTTTCAAAGTCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAGTTAATTAATGTAGCAGTAGCTTGGGGTTTTCAAAGTCAGAA  795

seq1  ATTCCTTTTTTGACTCTAAGCCGGTCTCTCTTAAGACGTTCAGTTCGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTTTGACTCTAAGCCGGTCTCTCTTAAGACGTTCAGTTCGCAT  845

seq1  ACTAACCTCCTCCTTTCCCCAGGCACAGACTTAAAAGATCTGGAACAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTCCTCCTTTCCCCAGGCACAGACTTAAAAGATCTGGAACAAGG  895

seq1  GGGCACTTTCTCTTTAGAATGTGGACTCGGGACAGGGGAGGAGTTTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTTCTCTTTAGAATGTGGACTCGGGACAGGGGAGGAGTTTGTCT  945

seq1  TTCGCTGTTAAAACACGGTCAACTGACTGCTGAGACTTTCCCTAGAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTGTTAAAACACGGTCAACTGACTGCTGAGACTTTCCCTAGAATTC  995

seq1: chr4_135754541_135755714
seq2: B6Ng01-134I13.g_70_1241

seq1  GAATTCAAGCGTGAGCATATGAATCAGGCCAGGATCCATCAGCAGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCGTGAGCATATGAATCAGGCCAGGATCCATCAGCAGTTGGG  50

seq1  CAGCGCCAGCATCGGACCCTGGGTTCCATTGCCTGAACCTTCCCCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCAGCATCGGACCCTGGGTTCCATTGCCTGAACCTTCCCCTGTAG  100

seq1  TAAAGGAAGACAAAAAACAAACACAAAAAACAACAAAAACCAAACCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGACAAAAAACAAACACAAAAAACAACAAAAACCAAACCAAAA  150

seq1  CAAAAAAACGCTGCTTGCCTAAGACCTGTGAAATTTTGACTCTTCTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACGCTGCTTGCCTAAGACCTGTGAAATTTTGACTCTTCTGAGC  200

seq1  AAGGGTCATTCATTTATCAGACATTTATGGATGGGAGCATCTATGCCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCATTCATTTATCAGACATTTATGGATGGGAGCATCTATGCCGTG  250

seq1  CCAGGGTGGGGTCTTCTTCCGGGTCCACACTGCACACCTGCTTTCAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGGGGTCTTCTTCCGGGTCCACACTGCACACCTGCTTTCAGCTC  300

seq1  TTGCTTCCTTGTTGCCGGAGCGGGGAGGGAACAGCCCAGCCAGCCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTTGTTGCCGGAGCGGGGAGGGAACAGCCCAGCCAGCCTTTCC  350

seq1  TGTTGGCAGTGGACCCCTGGGTACCTGAAGCTCTGGTTAAGTTCAAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCAGTGGACCCCTGGGTACCTGAAGCTCTGGTTAAGTTCAAGGTC  400

seq1  AAAGACCGAAGAGTGACCACTTGTCAGGGCTCTGCAGGAGGCTTTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCGAAGAGTGACCACTTGTCAGGGCTCTGCAGGAGGCTTTTTGTT  450

seq1  CTGTCTGTCTATTCAGATGTTTAGTCATGCAATTGTAAGATACTGACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTATTCAGATGTTTAGTCATGCAATTGTAAGATACTGACTGG  500

seq1  GGCTGGTGAGAAGTCTCAGCGGGTAAGAGCACTGAAGGCTCTTCTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGAGAAGTCTCAGCGGGTAAGAGCACTGAAGGCTCTTCTGAAGG  550

seq1  TCCTGAGTTCAAATCCCAGAAACCACGTGGTGGCTCACAACCATCTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAAATCCCAGAAACCACGTGGTGGCTCACAACCATCTGTAA  600

seq1  TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAACGATGGTGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAACGATGGTGTATT  650

seq1  CACATACATAAAATAAATAAATCTTAAAAACAAACAGGGCTGGAGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATAAAATAAATAAATCTTAAAAACAAACAGGGCTGGAGAGATG  700

seq1  GCTCAATGGTTAAGAGCACTGATTGCTCTTCCACAGGTCCTGAGTTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATGGTTAAGAGCACTGATTGCTCTTCCACAGGTCCTGAGTTCAAT  750

seq1  TCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATTCGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATTCGATGC  800

seq1  CCTCTTCTGGTGTGTCTGAATGCAGCAACAGTGTACTCACATATATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGTGTGTCTGAATGCAGCAACAGTGTACTCACATATATTAAA  850

seq1  TAAATAAATCTTTAAAACAAACAAAA-TATATAAAAATCTGAGGTGTTTC  899
      ||||||||||||| |||||||||||| ||||| |||||||||||||||||
seq2  TAAATAAATCTTT-AAACAAACAAAATTATATTAAAATCTGAGGTGTTTC  899

seq1  TGGCCAAGCTGGCGAGTGATGCATTGTGGGACTTACTTCACAGCCATGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGCTGGCGAGTGATGCATTGTGGGACTTACTTCACAGCCATGCA  949

seq1  TGACAGTGCATGACAGTGAAC-TCTATCTGAACCATCTCCTT-ACCTTTG  997
      ||||||||||||||||||||| | |||||||||||||| ||| || ||||
seq2  TGACAGTGCATGACAGTGAACTTTTATCTGAACCATCTTCTTAACTTTTG  999

seq1  TAAGGTGCTGCACATAAAGGTTTTCTGTTTTTACAGAAAC-ATAATAATG  1046
      ||||  ||||||| ||||||||||||| |||||||||||| |||||| ||
seq2  TAAGTGGCTGCACTTAAAGGTTTTCTG-TTTTACAGAAACAATAATATTG  1048

seq1  GCTTAATTACAGAAAACAG-AAAACAGAGACCAGGGTGGACGC-TCACAC  1094
      ||||| ||||||||||||| |||||||| ||||||  | |||| ||||||
seq2  GCTTATTTACAGAAAACAGTAAAACAGAAACCAGGTGGAACGCTTCACAC  1098

seq1  CAAATGGCCCCAGGAGGTTGATATGGTGCCAGGCAAATGGTTG-GAGGCA  1143
      |||||||||||||   |||||||||||| |||   |||||||| ||||||
seq2  CAAATGGCCCCAG--AGTTGATATGGTGTCAG--CAATGGTTGCGAGGCA  1144

seq1  GGAGGGGAGGATGCCGGGTGGATCTTTTGGC  1174
       |||||   |||| | || ||||||||||||
seq2  -GAGGG--AGATGTCCGGGGGATCTTTTGGC  1172