BAC Information

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BAC

Clone NameB6Ng01-134L03
Chromosome4 (Build37)
Map Location 115,483,870 - 115,484,922
singlet/doubletsinglet
Overlap geneAtpaf1
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik
Downstream geneMobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134L03.g
ACCDH934928
length1,053
definitionDH934928|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagagctcagcatctgcaacaagcagtctgtaaagagttactgt
gtaagcttattgcaagaagtgattgtggacatgagccctaatacttgata
caggaacaaagatatacaattactctgataattacctctcagcataaggg
ttccttttcagtgtttctggcctttggaatgagaaatatatcgcttctcg
gccttttggctaagatgaagtgtggaatgagaaatattcagggatccaca
agactattggcttggttttatttagtgtaatagtgcagttgcattctggc
cattttgacctcatagctcccacttctatgacttcataaactgtagcaat
aagcttgaagatcttagagatgttggctttatatactctttccatgcacc
agtgagctggctaaaaacataacccaaaactcctggccagactctaatac
aaccagctattctcatcagaataaagacttgtggatgccccttcagagtt
gccttcagtgtaactcagtgaattacgggtatacttcaataaacaggttc
aatgcctgtatactgttaaactgtcgcttatggccctactccctgaactc
tgcctgtgagaagctgatgaatcactacagtgtaaataaaacctttttct
aaggagatcaatctagatttgcatgattaaaaaaaaataagtgttatatg
aaaacgtgggtggaagcaaaagttcccagattgagtgcagggaatgtagc
aataaaataagtctggttttcagtctctgttacacagcatagtggaaact
aaacttttatactgttggtggcatcagtgccggggggttcattttatcag
aattcatcttggggctcggtgatttctttaaaacatcagtataattaagg
tattcttcagcaccagaagcacgtgtatctgctttgtggcccaaggttat
tgatacaaaagaatatggggtcacaccacctttatgacttcaaagcactc
cctgttccaccactggtcatttggtctaacatcttctaccttagtctgcg
ccc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115483870_115484922
seq2: B6Ng01-134L03.g_70_1122

seq1  GAATTCCAGAGCTCAGCATCTGCAACAAGCAGTCTGTAAAGAGTTACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCTCAGCATCTGCAACAAGCAGTCTGTAAAGAGTTACTGT  50

seq1  GTAAGCTTATTGCAAGAAGTGATTGTGGACATGAGCCCTAATACTTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTATTGCAAGAAGTGATTGTGGACATGAGCCCTAATACTTGATA  100

seq1  CAGGAACAAAGATATACAATTACTCTGATAATTACCTCTCAGCATAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAAAGATATACAATTACTCTGATAATTACCTCTCAGCATAAGGG  150

seq1  TTCCTTTTCAGTGTTTCTGGCCTTTGGAATGAGAAATATATCGCTTCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCAGTGTTTCTGGCCTTTGGAATGAGAAATATATCGCTTCTCG  200

seq1  GCCTTTTGGCTAAGATGAAGTGTGGAATGAGAAATATTCAGGGATCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGGCTAAGATGAAGTGTGGAATGAGAAATATTCAGGGATCCACA  250

seq1  AGACTATTGGCTTGGTTTTATTTAGTGTAATAGTGCAGTTGCATTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTGGCTTGGTTTTATTTAGTGTAATAGTGCAGTTGCATTCTGGC  300

seq1  CATTTTGACCTCATAGCTCCCACTTCTATGACTTCATAAACTGTAGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGACCTCATAGCTCCCACTTCTATGACTTCATAAACTGTAGCAAT  350

seq1  AAGCTTGAAGATCTTAGAGATGTTGGCTTTATATACTCTTTCCATGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGAAGATCTTAGAGATGTTGGCTTTATATACTCTTTCCATGCACC  400

seq1  AGTGAGCTGGCTAAAAACATAACCCAAAACTCCTGGCCAGACTCTAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTGGCTAAAAACATAACCCAAAACTCCTGGCCAGACTCTAATAC  450

seq1  AACCAGCTATTCTCATCAGAATAAAGACTTGTGGATGCCCCTTCAGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTATTCTCATCAGAATAAAGACTTGTGGATGCCCCTTCAGAGTT  500

seq1  GCCTTCAGTGTAACTCAGTGAATTACGGGTATACTTCAATAAACAGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGTGTAACTCAGTGAATTACGGGTATACTTCAATAAACAGGTTC  550

seq1  AATGCCTGTATACTGTTAAACTGTCGCTTATGGCCCTACTCCCTGAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGTATACTGTTAAACTGTCGCTTATGGCCCTACTCCCTGAACTC  600

seq1  TGCCTGTGAGAAGCTGATGAATCACTACAGTGTAAATAAAACCTTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGAGAAGCTGATGAATCACTACAGTGTAAATAAAACCTTTTTCT  650

seq1  AAGGAGATCAATCTAGATTTGCATGATTAAAAAAAAATAAGTGTTATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCAATCTAGATTTGCATGATTAAAAAAAAATAAGTGTTATATG  700

seq1  AAAACGTGGGTGGAAGCAAAAGTTCCCAGATTGAGTGCAGGGAATGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGGGTGGAAGCAAAAGTTCCCAGATTGAGTGCAGGGAATGTAGC  750

seq1  AATAAAATAAGTCTGGTTTTCAGTCTCTGTTACACAGCATAGTGGAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAGTCTGGTTTTCAGTCTCTGTTACACAGCATAGTGGAAACT  800

seq1  AAAC-TTTATACTGTTGGTGGCATCAGTGCC-GGGGGTTCATTTTATCAG  848
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAACTTTTATACTGTTGGTGGCATCAGTGCCGGGGGGTTCATTTTATCAG  850

seq1  AACTCATCTTGGGGCTCGGTGATTTC-TTGAAACACCAGAAATAATTAAG  897
      || ||||||||||||||||||||||| || ||||| |||  |||||||||
seq2  AATTCATCTTGGGGCTCGGTGATTTCTTTAAAACATCAG-TATAATTAAG  899

seq1  TTATTCTTCAGCACCAGAAGCACGTGTATCCTGCTTTGTGGCCCCAAGGT  947
       |||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GTATTCTTCAGCACCAGAAGCACGTGTAT-CTGCTTTGTGG-CCCAAGGT  947

seq1  CATTGATACAAAAGAATAGTGGGTCCACACCAACCTTATGACCTCAAAGC  997
       ||||||||||||||||| ||||  ||||||| | ||||||| |||||||
seq2  TATTGATACAAAAGAATA-TGGGGTCACACCACCTTTATGACTTCAAAGC  996

seq1  ACTCCCTGTCCCA-CACCTGTCATTTGGTCTAACATCCTCTACCTTAGTC  1046
      ||||||||| ||| |||  |||||||||||||||||| ||||||||||||
seq2  ACTCCCTGTTCCACCACTGGTCATTTGGTCTAACATCTTCTACCTTAGTC  1046

seq1  TGCCCCC  1053
      ||| |||
seq2  TGCGCCC  1053