BAC Information

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BAC

Clone NameB6Ng01-134N23
Chromosome4 (Build37)
Map Location 88,200,891 - 88,353,357
singlet/doubletdoublet
Overlap geneOTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1
Downstream geneLOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N23.bB6Ng01-134N23.g
ACCDH935061DH935062
length2211,085
definitionDH935061|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N23, 5' end.DH935062|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,353,138 - 88,353,357)(88,200,891 - 88,201,979)
sequence
tcagatcttcaacatcacacatacgaaaagagttcttgactagctgaaat
tgcaaaatgaaccatgggatccagtaaacaagagaaatgtatgcaattct
agggcaaaggggactggaaactattaaaggaactgaaaatacaaaacctg
caacacagctgtacagagaacataactttgtgttgaaattcttctctgtt
tagagatgtgtgtgtgtgtgt
gaattctttcaagaacttaccagagctggactctatttgttctttgcaag
ccaggccagtaggggtttctcttctctaattgtttctcagaattgaatgt
ttggttccccctttctttttttctttccccttttcttcttctttttcctt
ttcttttgggcacatcattttgtcactacaagaacattctctaagttaca
aaagtaggaataaactatctcttattaaaggatattttaaaaagcaaacc
ttaaactgctttgttattttgtttcaattggtggttatgcactttcaggg
ggaaaacaatccaatcaggaatcaaggtgcaatagaaagcagttgtacag
tgagcagagccagttaatgaggagcaaataagcagcacacactggggctt
tctgtatcagggagggggaaacaagggctgagaggcagaaagatggggtc
tgggatagcagggagatacagggagtctatcagaaacaaagctgtgtgtt
aacataagtacataattatatatcgtccatactactattatagatggcac
actttataaatgtaattataaatataattttatctgtagttccactttca
gtttcagtctaggacacagattcctatatgaagtatttaccactcatcag
ttcttattgaatattcaaatcaatgattattatctagtgtccagtgtgtc
tagtgaccaagatgctcaggtaatagtgacagacagcaaaagctttcaga
gcttcaatgtctgtcattttccatttgttcttcatgaaatttctttaaaa
ttttcatttactcttttctgaggtgttggtttgatggttgaagtctccaa
tgttgtcttatttctcttttctactttccaagaaagaaaaccctgatgtt
ggtttgtggcactaaaccaaaaatatgacatcactgaaaataaaggctag
aaagggactgatatgtcatctaaacaacaaagtagtagcaacggttatta
gatatacactaaaggtgacaagtctataataatcaaataaatctgtatgg
aagtgtttttccaggtggatcttcaggtcaatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88353138_88353357
seq2: B6Ng01-134N23.b_55_275 (reverse)

seq1  ACACACACACACACATCTCTAAACAGAGAAGAATTTCAACACAAAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATCTCTAAACAGAGAAGAATTTCAACACAAAGTTAT  50

seq1  GTTCTCTGTACAGCTGTGTTGCAGGTTTTGTATTTTCAGTTCCTTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGTACAGCTGTGTTGCAGGTTTTGTATTTTCAGTTCCTTTAATA  100

seq1  GTTTCCAGTCCCCTTTGCCCTAGAATTGCATACATTTCTCTTGTTTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGTCCCCTTTGCCCTAGAATTGCATACATTTCTCTTGTTTACTG  150

seq1  GATCCCATGGTTCATTTTGCAATTTCAGCTAGTCAAGAACTCTTTTC-TA  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATCCCATGGTTCATTTTGCAATTTCAGCTAGTCAAGAACTCTTTTCGTA  200

seq1  TGTGTGATGTTGAAGATCTGA  220
      |||||||||||||||||||||
seq2  TGTGTGATGTTGAAGATCTGA  221

seq1: chr4_88200891_88201979
seq2: B6Ng01-134N23.g_68_1152

seq1  GAATTCTTTCAAGAACTTACCAGAGCTGGACTCTATTTGTTCTTTGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAGAACTTACCAGAGCTGGACTCTATTTGTTCTTTGCAAG  50

seq1  CCAGGCCAGTAGGGGTTTCTCTTCTCTAATTGTTTCTCAGAATTGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAGTAGGGGTTTCTCTTCTCTAATTGTTTCTCAGAATTGAATGT  100

seq1  TTGGTTCCCCCTTTCTTTTTTTCTTTCCCCTTTTCTTCTTCTTTTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCCCCTTTCTTTTTTTCTTTCCCCTTTTCTTCTTCTTTTTCCTT  150

seq1  TTCTTTTGGGCACATCATTTTGTCACTACAAGAACATTCTCTAAGTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGGCACATCATTTTGTCACTACAAGAACATTCTCTAAGTTACA  200

seq1  AAAGTAGGAATAAACTATCTCTTATTAAAGGATATTTTAAAAAGCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGAATAAACTATCTCTTATTAAAGGATATTTTAAAAAGCAAACC  250

seq1  TTAAACTGCTTTGTTATTTTGTTTCAATTGGTGGTTATGCACTTTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGCTTTGTTATTTTGTTTCAATTGGTGGTTATGCACTTTCAGGG  300

seq1  GGAAAACAATCCAATCAGGAATCAAGGTGCAATAGAAAGCAGTTGTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAATCCAATCAGGAATCAAGGTGCAATAGAAAGCAGTTGTACAG  350

seq1  TGAGCAGAGCCAGTTAATGAGGAGCAAATAAGCAGCACACACTGGGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAGCCAGTTAATGAGGAGCAAATAAGCAGCACACACTGGGGCTT  400

seq1  TCTGTATCAGGGAGGGGGAAACAAGGGCTGAGAGGCAGAAAGATGGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCAGGGAGGGGGAAACAAGGGCTGAGAGGCAGAAAGATGGGGTC  450

seq1  TGGGATAGCAGGGAGATACAGGGAGTCTATCAGAAACAAAGCTGTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGCAGGGAGATACAGGGAGTCTATCAGAAACAAAGCTGTGTGTT  500

seq1  AACATAAGTACATAATTATATATCGTCCATACTACTATTATAGATGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGTACATAATTATATATCGTCCATACTACTATTATAGATGGCAC  550

seq1  ACTTTATAAATGTAATTATAAATATAATTTTATCTGTAGTTCCACTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAAATGTAATTATAAATATAATTTTATCTGTAGTTCCACTTTCA  600

seq1  GTTTCAGTCTAGGACACAGATTCCTATATGAAGTATTTACCACTCATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTCTAGGACACAGATTCCTATATGAAGTATTTACCACTCATCAG  650

seq1  TTCTTATTGAATATTCAAATCAATGATTATTATCTAGTGTCCAGTGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTGAATATTCAAATCAATGATTATTATCTAGTGTCCAGTGTGTC  700

seq1  TAGTGACCAAGATGCTCAGGTAATAGTGACAGACAGCAAAAGCTTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACCAAGATGCTCAGGTAATAGTGACAGACAGCAAAAGCTTTCAGA  750

seq1  GCTTCAATGTCTGTCATTTTCCATTTGTTCTTTCATGAAATTTCTTTAAA  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTCAATGTCTGTCATTTTCCATTTGTTC-TTCATGAAATTTCTTTAAA  799

seq1  ATTTTCATTTACTCTTTTCTGAGGTGTTGGTTTGATGGTTGAAGTCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTACTCTTTTCTGAGGTGTTGGTTTGATGGTTGAAGTCTCCA  849

seq1  ATGTTGTCTTATTTCTCTTTTTCTACTTTCCAAGAAAGAAAACCCTGATG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGTTGTCTTATTTCTC-TTTTCTACTTTCCAAGAAAGAAAACCCTGATG  898

seq1  TTGGTTTGTGGCACTAAACCAAAAATATGACATCACTGAAAATAAAAGCT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGGTTTGTGGCACTAAACCAAAAATATGACATCACTGAAAATAAAGGCT  948

seq1  AAGAAAGGGACTGATATGTCATCTAAACAACAAAGTAGTAGCAACGG-TA  999
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -AGAAAGGGACTGATATGTCATCTAAACAACAAAGTAGTAGCAACGGTTA  997

seq1  TTAGATAATACACTAAAGTGGACAAGTCTATAATAATCAAATAAAATAAT  1049
      |||||| |||||||||||  |||||||||||||||||||||||    |||
seq2  TTAGAT-ATACACTAAAGGTGACAAGTCTATAATAATCAAATA----AAT  1042

seq1  GT-TATGAAAGTGTTTT--CAAGT-GATCTTCAGGTTCAATGCA  1089
       | |||| |||||||||  || || |||||||||| ||||||||
seq2  CTGTATGGAAGTGTTTTTCCAGGTGGATCTTCAGG-TCAATGCA  1085