BAC Information

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BAC

Clone NameB6Ng01-135A19
Chromosome4 (Build37)
Map Location 84,920,614 - 85,064,120
singlet/doubletdoublet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052, Adamtsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A19.bB6Ng01-135A19.g
ACCDH935194DH935195
length9711,155
definitionDH935194|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A19, 5' end.DH935195|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,063,556 - 85,064,120)(84,920,614 - 84,921,774)
sequence
gaattcagtaatcaatgttggatgtcttccccccaatagctctctctgcc
ttattcttttttaagaaacttttattttattttattaattcatttttatt
acatatttttgtcaattacatttccaatgctataccaaaagtcccccata
cccacccacccccactcccctacccgcccactccccctttttggccctgg
cgttcccctgttctggggcatataaagtttgtgtgtccaatgggcctctc
tttccagtgatggccgactaggccatcttttgatacatatgcagctagag
tcaagagctccggggtactggttagttcataatgttgttccacctatagg
gttgcagatccctttagctccttggctactttctctagctcctccattgg
gagccctgtgatccatccattagctgactgtgagcatccacttctgtgtt
tgctaggccccggcatagtctcacaagagacagctacatctgggtccttt
cgataaaatcttgctagtgtgtgcaatggtgtcagcgtttggaagctgat
tatggggtggatccctggatatggcagtctctacatggtccatcctttcg
tctcagctccaaactttgtctctgtaactccttccatgggtgttttgttc
ccactttctaaggaggggcatagtgtccacacttcagtcttcattcttct
tgagtttcatgtgtttagcaaattgtatctttatatcttgggtatcctag
gttttgggctaatatccacttatcagtgagtacatattgtgtgagttttc
tttgtgaatgtattacctcactcagatgatgccctccaggtccatccatt
tggctaggaatttcataaatttcattctttttgatagctgagtagtactc
catttgtgtagatgtaccacattttctgtatccattcctcttgttgaggg
catctgggtttctttccagct
gaattccagatttgaattcaataattttaggaagtaagttttaggagatg
gttttagttgctttgccagaaaaaatgtaataaagttagtaagaatacag
tgtgcccctcctcacagaatagtaagtaaagccttcataataaggaatat
aatgagtttttacaattgcactgaaaagagacaaatttgtgatcaagtaa
aaacattcattctaggtcgggaccaaggatgaagccgcaggtgtgcactg
tgataaaacaaggccatgtgaaactgttgctttgaacttataatgagctg
gtagaatgaaacactgcttcattaagccttttttccctcttaatcccctg
ttgcttccagtagtaattaattaccaaaagccaatggcttttggccttag
aatagtaaatagttataaacagaagaatctccaaagataaaaatgctgtg
gccaagaccactaacaccataccccttgctgccttttcttaggacacttt
catgccggctggactctggcatgtcagaattattgaaagaaagttaaagg
gattggggacactgtacggtgataaagtgcttgccacacaggcatgaaga
ctcacatgcaatgtctagcatccatgtacaaagctgaatatattggcaag
tttgtaatcccagcactggggaaacaggcacagaagaatcactgatggct
tcctagccagccagcttaacccacttgacaagtcccagtgggctgccagt
ctcaacagacaaggtagaaagcttacgaggaacaagacctaagaagtctt
ctggcttccaccccggcccccccctggataggaacacacatccatatatg
tacatacatatatgcacacatacccaatgaactaaaggatacatttgttt
tatattgaaggtaataatcagaaatggttagaagaaggcacatggtatac
attattttgtgggtggtaatgaaagttcatagcataagcaattttgttcc
tgtagtcaaatttggattcattttacgcatcacataaattaggcatttgg
aaacagtgattgccgtggcattacctataatctggatgtgacattggtcc
tcttttctcggacacctctgctccttaagcggtccagggcacactgcacg
tgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85063556_85064120
seq2: B6Ng01-135A19.b_42_606 (reverse)

seq1  GGGATCCACCCCATAATCAGCTTCCAAACGCTGACACCATTGCACACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCACCCCATAATCAGCTTCCAAACGCTGACACCATTGCACACACT  50

seq1  AGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTA  100

seq1  TGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGA  150

seq1  TGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCT  200

seq1  AAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTA  250

seq1  CCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTC  300

seq1  GGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCC  350

seq1  CAGAACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGCGGGTAGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGCGGGTAGGGGA  400

seq1  GTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAA  450

seq1  TTGACAAAAATATGTAATAAAAATGAATTAATAAAATAAAATAAAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAAATATGTAATAAAAATGAATTAATAAAATAAAATAAAAGTTT  500

seq1  CTTAAAAAAGAATAAGGCAGAGAGAGCTATTGGGGGGAAGACATCCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAGAATAAGGCAGAGAGAGCTATTGGGGGGAAGACATCCAACA  550

seq1  TTGATTACTGAATTC  565
      |||||||||||||||
seq2  TTGATTACTGAATTC  565

seq1: chr4_84920614_84921774
seq2: B6Ng01-135A19.g_69_1223

seq1  GAATTCCAGATTTGAATTCAATAATTTTAGGAAGTAAGTTTTAGGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTTGAATTCAATAATTTTAGGAAGTAAGTTTTAGGAGATG  50

seq1  GTTTTAGTTGCTTTGCCAGAAAAAATGTAATAAAGTTAGTAAGAATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTTGCTTTGCCAGAAAAAATGTAATAAAGTTAGTAAGAATACAG  100

seq1  TGTGCCCCTCCTCACAGAATAGTAAGTAAAGCCTTCATAATAAGGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCTCCTCACAGAATAGTAAGTAAAGCCTTCATAATAAGGAATAT  150

seq1  AATGAGTTTTTACAATTGCACTGAAAAGAGACAAATTTGTGATCAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTTTTACAATTGCACTGAAAAGAGACAAATTTGTGATCAAGTAA  200

seq1  AAACATTCATTCTAGGTCGGGACCAAGGATGAAGCCGCAGGTGTGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCATTCTAGGTCGGGACCAAGGATGAAGCCGCAGGTGTGCACTG  250

seq1  TGATAAAACAAGGCCATGTGAAACTGTTGCTTTGAACTTATAATGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAACAAGGCCATGTGAAACTGTTGCTTTGAACTTATAATGAGCTG  300

seq1  GTAGAATGAAACACTGCTTCATTAAGCCTTTTTTCCCTCTTAATCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATGAAACACTGCTTCATTAAGCCTTTTTTCCCTCTTAATCCCCTG  350

seq1  TTGCTTCCAGTAGTAATTAATTACCAAAAGCCAATGGCTTTTGGCCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCAGTAGTAATTAATTACCAAAAGCCAATGGCTTTTGGCCTTAG  400

seq1  AATAGTAAATAGTTATAAACAGAAGAATCTCCAAAGATAAAAATGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAATAGTTATAAACAGAAGAATCTCCAAAGATAAAAATGCTGTG  450

seq1  GCCAAGACCACTAACACCATACCCCTTGCTGCCTTTTCTTAGGACACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACCACTAACACCATACCCCTTGCTGCCTTTTCTTAGGACACTTT  500

seq1  CATGCCGGCTGGACTCTGGCATGTCAGAATTATTGAAAGAAAGTTAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCGGCTGGACTCTGGCATGTCAGAATTATTGAAAGAAAGTTAAAGG  550

seq1  GATTGGGGACACTGTACGGTGATAAAGTGCTTGCCACACAGGCATGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGGACACTGTACGGTGATAAAGTGCTTGCCACACAGGCATGAAGA  600

seq1  CTCACATGCAATGTCTAGCATCCATGTACAAAGCTGAATATATTGGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGCAATGTCTAGCATCCATGTACAAAGCTGAATATATTGGCAAG  650

seq1  TTTGTAATCCCAGCACTGGGGAAACAGGCACAGAAGAATCACTGATGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATCCCAGCACTGGGGAAACAGGCACAGAAGAATCACTGATGGCT  700

seq1  TCCTAGCCAGCCAGCTTAACCCACTTGACAAGTCCCAGTGGGCTGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCCAGCCAGCTTAACCCACTTGACAAGTCCCAGTGGGCTGCCAGT  750

seq1  CTCAACAGACAAGGTAGAAAGCTTACGAGGAACAAGACCTAAGAAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGACAAGGTAGAAAGCTTACGAGGAACAAGACCTAAGAAGTCTT  800

seq1  CTGGCTTCCACCCCGGCCCCCCCCTGGATAGGAACACACATCCATATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCACCCCGGCCCCCCCCTGGATAGGAACACACATCCATATATG  850

seq1  TACATACATATATGCACACATACCCAATGAACT-AAGGATACATTTGTTT  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACATACATATATGCACACATACCCAATGAACTAAAGGATACATTTGTTT  900

seq1  TATATTGAAGGTTAATAATCAGAAATGGTTAGAAGAAGCCACATGGTATA  949
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TATATTGAAGG-TAATAATCAGAAATGGTTAGAAGAAGGCACATGGTATA  949

seq1  CATTATTTTGTGGGTGGTAATGAAAGTTCATAGCAT-AGCAATTTTGTTT  998
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  CATTATTTTGTGGGTGGTAATGAAAGTTCATAGCATAAGCAATTTTG-TT  998

seq1  CCTGTAGTCAAACATTGGATTCATTTTAACGCATCACAATAAATAAGCAT  1048
      ||||||||||||  ||||||||||||| ||||||||||  || || ||||
seq2  CCTGTAGTCAAA-TTTGGATTCATTTT-ACGCATCACATAAATTAGGCAT  1046

seq1  TT-GAAACAGTGATTGCAGTGCCATTACCTTATATGCTGAATGGTGACAT  1097
      || |||||||||||||| ||| ||||||| ||||  ||| || |||||||
seq2  TTGGAAACAGTGATTGCCGTGGCATTACC-TATAATCTGGAT-GTGACAT  1094

seq1  TGGT-CTCTTTCTCCAGAGCACCTCTGCTCCTTAAGCCTGTTTCCAGGCA  1146
      |||| |||||| ||  |  ||||||||||||||||||  | | |  ||||
seq2  TGGTCCTCTTT-TCTCGGACACCTCTGCTCCTTAAGC--GGTCCAGGGCA  1141

seq1  CACTGCACGTAGATG  1161
      |||||||||| ||||
seq2  CACTGCACGT-GATG  1155