BAC Information

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BAC

Clone NameB6Ng01-135C15
Chromosome4 (Build37)
Map Location 132,847,510 - 132,996,819
singlet/doubletdoublet
Overlap geneLOC100042018, Wdtc1, Slc9a1
Upstream geneTaf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990
Downstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C15.bB6Ng01-135C15.g
ACCDH935274DH935275
length1,0331,095
definitionDH935274|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C15, 5' end.DH935275|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,847,510 - 132,848,546)(132,995,722 - 132,996,819)
sequence
gaattcagagagcctgtctcaaaagtgtctcctaatttatgtgtatcatt
tttttaaaacataactaatttgctaggccataaaaactcctaagcttaaa
tacttaataaattgagctcagctttttttttttttgcttaggaggaccta
tgaaaaattactatgatgatactgttatgagccaagaaattctggaatat
tctggtttaagaaatcaccaggggctggtgagatggctcagtgggtaaga
gcactgactgctcttctgaatgtcctgagttcaattcccagcaaccacat
ggtggctcacaaccatctgtgatgggatctgatgccctcttctggtgtgt
ctgaagacggctacagtgtacttagatataataaataaatcttaaaaaaa
gaaatcaccagataatctaggacacaaaacaaaaacaaagcccaaagcaa
aactaaaactaaaactaacccccaggtagtaggctacagacatacttttg
tctgtagtacagtagaaaggtacctgcagggaagggtgaacacgactgtg
caaaacattcgcttcttgtaatacataagaaccgtgcacaccgtggatca
taggacgggatgtgcacctgccttgggttccagtttaaagaatctgaaaa
ctaccaagatttgaaatccttcatttccaaggggagaaagcccgagagta
aaagctgatgatgtccaatcacagctatcggccggccgtgggctttgtac
caggcctgctgggttgaacgacccatgcaaggcaggtctcactctgctca
gcagaggtgtggttgctccatgtcacagagccatggtggggagggcccca
acaaatgccaccagtcacagctagaacaaaatggttttaatcaattgtgt
accctcactcttctggggagcagagcaacaaaaggctcggctcctgcccc
agaggacagtaagcttatgtgtctctccacactgcagggtccaggctaag
cagcgggcggagacagaagaatgaaagggggga
gaattctgttttttgagatagggtctctcaccgtgtagaccaggctagcc
tcaatctcacagcactctgcctgcctctgcctcttgattgctagagttaa
aggcttgtgccaccacacccagccttattcttggaccttgatttcatttc
catctcatttagctctctgttacttcctccaagattctgaaactaaaact
gtgtgctaccacacccatcatcttcttggtggccccaggagagactggaa
gcctggtggggcagctggaactgtaagatcggggtgctgtttgaccttgg
aacaaagtcaggtgtgcctggcagcctctgagggcacaaggaaggaagct
caggggagccgctgagcaggtggccggttccctggagtcccttctgcagc
ctccagctgcacacccacccctccccttgcacattagactctgctcttca
gccctaattgattaaggctggagaactggagcaggcgcacaggcacgcac
agctccgcaggaaccaaccctatctctggaactcggaggcaaaagcgcta
actgccatcggatctcagatctcgatgtgaggctgggtcttcgcagaaca
gtgtccccaccccccacccccaccccaacgctcttcaggagaatgacccg
gagtgccggagtacaggagccaagcaattgtatgggtgatgccaggcaat
tgaagtatcagctacacaagtggtggcttttcatcccaccttgcccttac
ccccttccccgggaaaaactgagttcaagcgctgccccccttgaggaaca
ggaaaccactaatcccctgcttgctagttgccaagcaacccaaggatgag
ccttcgaggtcatttctcagacagctctgcgcctccccacagcctgtgaa
cagatgggccctgcaagcagccagtccagtcctaagcaattgctatgctt
ctgcagcctgtcccctgagagtaagcagagaaggaggcttctagggatgc
ggcaggtgcttgttgaaaggagaggggtcttggcccaggctccagaacct
tgaagatcctgctctcttgtccaggcagacctgggaagaaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132847510_132848546
seq2: B6Ng01-135C15.b_47_1079

seq1  GAATTCAGAGAGCCTGTCTCAAAAGTGTCTCCTAATTTATGTGTATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGCCTGTCTCAAAAGTGTCTCCTAATTTATGTGTATCATT  50

seq1  TTTTTAAAACATAACTAATTTGCTAGGCCATAAAAACTCCTAAGCTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACATAACTAATTTGCTAGGCCATAAAAACTCCTAAGCTTAAA  100

seq1  TACTTAATAAATTGAGCTCAGCTTTTTTTTTTTTTGCTTAGGAGGACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATAAATTGAGCTCAGCTTTTTTTTTTTTTGCTTAGGAGGACCTA  150

seq1  TGAAAAATTACTATGATGATACTGTTATGAGCCAAGAAATTCTGGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTACTATGATGATACTGTTATGAGCCAAGAAATTCTGGAATAT  200

seq1  TCTGGTTTAAGAAATCACCAGGGGCTGGTGAGATGGCTCAGTGGGTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTAAGAAATCACCAGGGGCTGGTGAGATGGCTCAGTGGGTAAGA  250

seq1  GCACTGACTGCTCTTCTGAATGTCCTGAGTTCAATTCCCAGCAACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACTGCTCTTCTGAATGTCCTGAGTTCAATTCCCAGCAACCACAT  300

seq1  GGTGGCTCACAACCATCTGTGATGGGATCTGATGCCCTCTTCTGGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACCATCTGTGATGGGATCTGATGCCCTCTTCTGGTGTGT  350

seq1  CTGAAGACGGCTACAGTGTACTTAGATATAATAAATAAATCTTAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACGGCTACAGTGTACTTAGATATAATAAATAAATCTTAAAAAAA  400

seq1  GAAATCACCAGATAATCTAGGACACAAAACAAAAACAAAGCCCAAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCACCAGATAATCTAGGACACAAAACAAAAACAAAGCCCAAAGCAA  450

seq1  AACTAAAACTAAAACTAACCCCCAGGTAGTAGGCTACAGACATACTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAACTAAAACTAACCCCCAGGTAGTAGGCTACAGACATACTTTTG  500

seq1  TCTGTAGTACAGTAGAAAGGTACCTGCAGGGAAGGGTGAACACGACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTACAGTAGAAAGGTACCTGCAGGGAAGGGTGAACACGACTGTG  550

seq1  CAAAACATTCGCTTCTTGTAATACATAAGAACCGTGCACACCGTGGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTCGCTTCTTGTAATACATAAGAACCGTGCACACCGTGGATCA  600

seq1  TAGGACGGGATGTGCACCTGCCTTGGGTTCCAGTTTAAAGAATCTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGGGATGTGCACCTGCCTTGGGTTCCAGTTTAAAGAATCTGAAAA  650

seq1  CTACCAAGATTTGAAATCCTTCATTTCCAAGGGGAGAAAGCCCGAGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGATTTGAAATCCTTCATTTCCAAGGGGAGAAAGCCCGAGAGTA  700

seq1  AAAGCTGATGATGTCCAATCACAGCTATCGGCCGGCCGTGGGCTTTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGATGATGTCCAATCACAGCTATCGGCCGGCCGTGGGCTTTGTAC  750

seq1  CAGGCCTGCTGGGTTGAACGACCCATGCAAGGCAGGTCTCACTCTGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCTGGGTTGAACGACCCATGCAAGGCAGGTCTCACTCTGCTCA  800

seq1  GCAGAGGTGTGGTTGCTCCATGTCACAGAGCCATGGTGGGGAGGGCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTGTGGTTGCTCCATGTCACAGAGCCATGGTGGGGAGGGCCCCA  850

seq1  ACAAATGCCACCAGTCACAGCTAGAACAAAATGGTTTTAATCAATTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCCACCAGTCACAGCTAGAACAAAATGGTTTTAATCAATTGTGT  900

seq1  CACCCTCACTCTCCT-GGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCC  949
       ||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  -ACCCTCACTCTTCTGGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCC  949

seq1  CAGAGGACAGTAAGGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTA  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACAGTAA-GCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTA  998

seq1  GGCAGGCGGGCGGGAGACAGGAGGATGGACAGGGGGGA  1037
       ||| |||||| |||||||| || || || ||||||||
seq2  AGCA-GCGGGC-GGAGACAGAAGAAT-GAAAGGGGGGA  1033

seq1: chr4_132995722_132996819
seq2: B6Ng01-135C15.g_69_1163 (reverse)

seq1  TCCCTTTCCTCCCAGGTACTGCCCTGGACA--AGAGCAGAATCCTGCAAG  48
      |||||||| |||||||| ||| ||||||||  ||||||| || || ||||
seq2  TCCCTTTCTTCCCAGGT-CTG-CCTGGACAAGAGAGCAGGAT-CTTCAAG  47

seq1  GCTGCTGGGAGCCT-GGCCCAGGCCCCTCTCCCTTTCCACAAGCCCCTGC  97
      | | || ||||||| |||| || ||||||| |||||| |||||| |||||
seq2  G-TTCT-GGAGCCTGGGCCAAGACCCCTCT-CCTTTCAACAAGCACCTGC  94

seq1  CGCATCCCTAGAGGCCTCCTTCTCTGCTTACTCTCAGGGGACAGGCTGCA  147
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGCATCCCTAGAAGCCTCCTTCTCTGCTTACTCTCAGGGGACAGGCTGCA  144

seq1  GGAGCATAGCAATTGCTTAGGACTGGGACTGGCTGCTTGCAGGGGCCATC  197
      | |||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  GAAGCATAGCAATTGCTTAGGACT-GGACTGGCTGCTTGCAGGGCCCATC  193

seq1  TGTTCACAGGCTGTGGGGAGGCGCAGAGCTGTCTGAGAAATGACCTCGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAGGCTGTGGGGAGGCGCAGAGCTGTCTGAGAAATGACCTCGAA  243

seq1  GGCTCATCC-TGGGTTGCTTGGCAACTAGCAAGCAGGGGATTAGTGGTTT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCCTTGGGTTGCTTGGCAACTAGCAAGCAGGGGATTAGTGGTTT  293

seq1  CCTGTTCCTCAAGGGGGGCAGCGCTTGAACTCAGTTTTTCCCGGGGAAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCTCAAGGGGGGCAGCGCTTGAACTCAGTTTTTCCCGGGGAAGG  343

seq1  GGGTAAGGGCAAGGTGGGATGAAAAGCCACCACTTGTGTAGCTGATACTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGGCAAGGTGGGATGAAAAGCCACCACTTGTGTAGCTGATACTT  393

seq1  CAATTGCCTGGCATCACCCATACAATTGCTTGGCTCCTGTACTCCGGCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCCTGGCATCACCCATACAATTGCTTGGCTCCTGTACTCCGGCAC  443

seq1  TCCGGGTCATTCTCCTGAAGAGCGTTGGGGTGGGGGTGGGGGGTGGGGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGTCATTCTCCTGAAGAGCGTTGGGGTGGGGGTGGGGGGTGGGGAC  493

seq1  ACTGTTCTGCGAAGACCCAGCCTCACATCGAGATCTGAGATCCGATGGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTGCGAAGACCCAGCCTCACATCGAGATCTGAGATCCGATGGCA  543

seq1  GTTAGCGCTTTTGCCTCCGAGTTCCAGAGATAGGGTTGGTTCCTGCGGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCGCTTTTGCCTCCGAGTTCCAGAGATAGGGTTGGTTCCTGCGGAG  593

seq1  CTGTGCGTGCCTGTGCGCCTGCTCCAGTTCTCCAGCCTTAATCAATTAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCGTGCCTGTGCGCCTGCTCCAGTTCTCCAGCCTTAATCAATTAGG  643

seq1  GCTGAAGAGCAGAGTCTAATGTGCAAGGGGAGGGGTGGGTGTGCAGCTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGCAGAGTCTAATGTGCAAGGGGAGGGGTGGGTGTGCAGCTGG  693

seq1  AGGCTGCAGAAGGGACTCCAGGGAACCGGCCACCTGCTCAGCGGCTCCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCAGAAGGGACTCCAGGGAACCGGCCACCTGCTCAGCGGCTCCCC  743

seq1  TGAGCTTCCTTCCTTGTGCCCTCAGAGGCTGCCAGGCACACCTGACTTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCCTTCCTTGTGCCCTCAGAGGCTGCCAGGCACACCTGACTTTG  793

seq1  TTCCAAGGTCAAACAGCACCCCGATCTTACAGTTCCAGCTGCCCCACCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGTCAAACAGCACCCCGATCTTACAGTTCCAGCTGCCCCACCAG  843

seq1  GCTTCCAGTCTCTCCTGGGGCCACCAAGAAGATGATGGGTGTGGTAGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGTCTCTCCTGGGGCCACCAAGAAGATGATGGGTGTGGTAGCAC  893

seq1  ACAGTTTTAGTTTCAGAATCTTGGAGGAAGTAACAGAGAGCTAAATGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTAGTTTCAGAATCTTGGAGGAAGTAACAGAGAGCTAAATGAGA  943

seq1  TGGAAATGAAATCAAGGTCCAAGAATAAGGCTGGGTGTGGTGGCACAAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGAAATCAAGGTCCAAGAATAAGGCTGGGTGTGGTGGCACAAGC  993

seq1  CTTTAACTCTAGCAATCAAGAGGCAGAGGCAGGCAGAGTGCTGTGAGATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTCTAGCAATCAAGAGGCAGAGGCAGGCAGAGTGCTGTGAGATT  1043

seq1  GAGGCTAGCCTGGTCTACACGGTGAGAGACCCTATCTCAAAAAACAGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGCCTGGTCTACACGGTGAGAGACCCTATCTCAAAAAACAGAAT  1093

seq1  TC  1098
      ||
seq2  TC  1095