BAC Information

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BAC

Clone NameB6Ng01-135C22
Chromosome4 (Build37)
Map Location 60,204,506 - 60,318,127
singlet/doubletdoublet
Overlap geneLOC100041687, LOC667221
Upstream geneUgcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882
Downstream geneLOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C22.bB6Ng01-135C22.g
ACCDH935288DH935289
length1,1131,094
definitionDH935288|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C22, 5' end.DH935289|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,316,992 - 60,318,127)(60,204,506 - 60,205,308)
sequence
gaattcctcacttgagaattctttgtttatggcactataaccattccctc
aaaggacccacttggctaaaacatttccccaaagcacattctgattatac
atacaattcactgatcgtactttttctatattaaagttccttcacataga
cctagcttcttctgcatggacacagactagggttagtcccaaacacagca
gcagcagcagcagctgcatttggtctgaaatagaattatctgtgtgtcag
gaccggaccacgtctttctggtgatgttgcctacactccactccacaact
cctttgcttgtccttatatactctctggattcagtgggtttttttttttc
ttcctgtatgggtcgactctacctctgtcaggctttgtggaatattttct
catttattgatgagaggccaaggattgttcctgccattttcaaacttggc
aatatcatcacctatggattgatttagtagtcttacatttctcaaaacat
attcccaagaaaacagtgggtgttcaagggaactgtgatctggaactaga
ggcacctttggatctggcttggaatcagaaagacagttttggaggggatg
ggaaatgaactggaaggacaagtatgtatagaatatttgctttaaggtga
gtatggatgaagttgaattacacaacttttgcgaaagattcattcatatt
tcatgtgtatgagcattggttttgcatgtgtacctgagtaccatgcacag
gtctggtgcagtggaggtcaaagaaggaatcagattctttgaaacttgtt
tttgctgaggacacaggttcaattatctcacttacctggcatcctaaaac
tgactctatcttcagtaacaggaaaccatacactttcttttgcgatccct
gttgcctcctgtacacaagtggtgcatataaactcattcagcacatacac
ataaaaacagtaaatgttaactaaaaacttatcagaaaagtcttcaaggc
tatgggatagctgcaaaaggcttcactttgtacagatagcactgactcag
attcaaagtgtatcagtagcaagtcatcactgtttactttggaaactgac
tcactgacaagac
gaattctttgcttatctctgaatcccatttttatttatttattattatta
ttattaaattttaaattttttattacgtattttcctcaattacatttcca
atgctatcccaaaagtcccccataccctcctccccactcccctacccacc
cattcccacttttttgtcctggcgttcccctgtactggggcatacaaagt
ttgcatgtccaatgggcctctctttccagtgatggtcgactaggtcatct
tttgatacatatgcagctagagtcaagagctcttgggtactggttagttc
ataatgttgttgcaactacatggttgcagatctctttagctccttgggta
ctttctctagctcttccattgggggctctgtgatccatccaatatctgac
tgtgagcatccacttatgtgtttgctaggcccaggcgtagtctcacaaga
gacagctatatcagggtcctttcagcaaactcttgctagtgtatgcaatg
gttgtggagagccgcaatacatttaccatcataagatggtgccagcttcc
gcagtgtcttatgccacctaaacaaagatcaagctatgtgcgcatgtgca
aggagtgaaagcatgccaagtcccaagcccacccccggggtgtatgagat
cgtgggtaaagcaaccattcaggcatggacatgccacaccagggggtatt
taagcagcacctttctgaggcttctttgtcttcctcaacaatatgtaata
aagtttggctgcagaaggattcttgtgtcccttgtgcattcttgctagcg
agaacaatagctcgggaaataatggcgccgaaacccgggaacgccttacc
atcgctgggtgccaagggggcccccactcgtggggagggatccagaactg
cagacttgatgtagctctgagagacatgtgaaacatgtcagaaacagagc
gggttaagatagagctcagagaaatattagaatagtcttccaagaccttg
attcgaggagtgaaagattgggaaggaccctcctggagaagaataggaaa
gaaggaaagctcaaaagaccaggtagctgacacaaaaagtcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_60316992_60318127
seq2: B6Ng01-135C22.b_44_1156 (reverse)

seq1  GTCTTGTCAGTTGAAGTCCAATGTTCTCAAAAGTAAACAGTTGATGAAAC  50
      |||||||||||   ||||    ||| || ||||||||||| ||||||   
seq2  GTCTTGTCAGT--GAGTC---AGTT-TCCAAAGTAAACAG-TGATGA---  40

seq1  CTGGCTACTGATACCACTTTGGATTCTGAGGTCAGTGCTATCTGTACAAA  100
      || |||||||||| |||||| || ||||| ||||||||||||||||||||
seq2  CTTGCTACTGATA-CACTTT-GAATCTGA-GTCAGTGCTATCTGTACAAA  87

seq1  GGTTGAAGCCTTTTTGGCAGCTATCCCCATAGCCTTGGAAGACTTTTCTT  150
      |  |||||||||||  |||||||| ||||||||||| ||||||||||| |
seq2  G--TGAAGCCTTTT--GCAGCTAT-CCCATAGCCTT-GAAGACTTTTC-T  130

seq1  GATAAGTTTTTTAAGTTAACATTTACTGTTTTTATGTGTATGTGCCTGAA  200
      |||||||||||  ||||||||||||||||||||||||||||||| |||||
seq2  GATAAGTTTTT--AGTTAACATTTACTGTTTTTATGTGTATGTG-CTGAA  177

seq1  TGAGTTTATATGCACCACTTGTGTACAGGAGGCAACAGGGATCGCAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATATGCACCACTTGTGTACAGGAGGCAACAGGGATCGCAAAAG  227

seq1  AAAGTGTATGGTTTCCTGTTACTGAAGATAGAGTCAGTTTTAGGATGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTATGGTTTCCTGTTACTGAAGATAGAGTCAGTTTTAGGATGCCA  277

seq1  GGTAAGTGAGATAATTGAACCTGTGTCCTCAGCAAAAACAAGTTTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGAGATAATTGAACCTGTGTCCTCAGCAAAAACAAGTTTCAAAG  327

seq1  AATCTGATTCCTTCTTTGACCTCCACTGCACCAGACCTGTGCATGGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATTCCTTCTTTGACCTCCACTGCACCAGACCTGTGCATGGTACT  377

seq1  CAGGTACACATGCAAAACCAATGCTCATACACATGAAATATGAATGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACACATGCAAAACCAATGCTCATACACATGAAATATGAATGAATC  427

seq1  TTTCGCAAAAGTTGTGTAATTCAACTTCATCCATACTCACCTTAAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCAAAAGTTGTGTAATTCAACTTCATCCATACTCACCTTAAAGCAA  477

seq1  ATATTCTATACATACTTGTCCTTCCAGTTCATTTCCCATCCCCTCCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTATACATACTTGTCCTTCCAGTTCATTTCCCATCCCCTCCAAAA  527

seq1  CTGTCTTTCTGATTCCAAGCCAGATCCAAAGGTGCCTCTAGTTCCAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCTGATTCCAAGCCAGATCCAAAGGTGCCTCTAGTTCCAGATC  577

seq1  ACAGTTCCCTTGAACACCCACTGTTTTCTTGGGAATATGTTTTGAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCCTTGAACACCCACTGTTTTCTTGGGAATATGTTTTGAGAAAT  627

seq1  GTAAGACTACTAAATCAATCCATAGGTGATGATATTGCCAAGTTTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTACTAAATCAATCCATAGGTGATGATATTGCCAAGTTTGAAAA  677

seq1  TGGCAGGAACAATCCTTGGCCTCTCATCAATAAATGAGAAAATATTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAACAATCCTTGGCCTCTCATCAATAAATGAGAAAATATTCCAC  727

seq1  AAAGCCTGACAGAGGTAGAGTCGACCCATACAGGAAGAAAAAAAAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGACAGAGGTAGAGTCGACCCATACAGGAAGAAAAAAAAAAACC  777

seq1  CACTGAATCCAGAGAGTATATAAGGACAAGCAAAGGAGTTGTGGAGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATCCAGAGAGTATATAAGGACAAGCAAAGGAGTTGTGGAGTGGA  827

seq1  GTGTAGGCAACATCACCAGAAAGACGTGGTCCGGTCCTGACACACAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGCAACATCACCAGAAAGACGTGGTCCGGTCCTGACACACAGATA  877

seq1  ATTCTATTTCAGACCAAATGCAGCTGCTGCTGCTGCTGCTGTGTTTGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTCAGACCAAATGCAGCTGCTGCTGCTGCTGCTGTGTTTGGGA  927

seq1  CTAACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGGTCTATGTGAAGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGGTCTATGTGAAGGAA  977

seq1  CTTTAATATAGAAAAAGTACGATCAGTGAATTGTATGTATAATCAGAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATAGAAAAAGTACGATCAGTGAATTGTATGTATAATCAGAATG  1027

seq1  TGCTTTGGGGAAATGTTTTAGCCAAGTGGGTCCTTTGAGGGAATGGTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGGGAAATGTTTTAGCCAAGTGGGTCCTTTGAGGGAATGGTTAT  1077

seq1  AGTGCCATAAACAAAGAATTCTCAAGTGAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  AGTGCCATAAACAAAGAATTCTCAAGTGAGGAATTC  1113

seq1: chr4_60204506_60205308
seq2: B6Ng01-135C22.g_389_1162

seq1  TGGTTGCAGATCTCTTTAGCTCCTTGGGTACTTTCTCTAGCTCTTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCAGATCTCTTTAGCTCCTTGGGTACTTTCTCTAGCTCTTCCATT  50

seq1  GGGGGCTCTGTGATCCATCCAATATCTGACTGTGAGCATCCACTTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTCTGTGATCCATCCAATATCTGACTGTGAGCATCCACTTATGTG  100

seq1  TTTGCTAGGCCCAGGCGTAGTCTCACAAGAGACAGCTATATCAGGGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGGCCCAGGCGTAGTCTCACAAGAGACAGCTATATCAGGGTCCT  150

seq1  TTCAGCAAACTCTTGCTAGTGTATGCAATGGTTGTGGAGAGCCGCAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAACTCTTGCTAGTGTATGCAATGGTTGTGGAGAGCCGCAATAC  200

seq1  ATTTACCATCATAAGATGGTGCCAGCTTCCGCAGTGTCTTATGCCACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCATCATAAGATGGTGCCAGCTTCCGCAGTGTCTTATGCCACCTA  250

seq1  AACAAAGATCAAGCTATGTGCGCATGTGCAAGGAGTGAAAGCATGCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATCAAGCTATGTGCGCATGTGCAAGGAGTGAAAGCATGCCAAG  300

seq1  TCCCAAGCCCACCCCCGGGGTGTATGAGATCGTGGGTAAAGCAACCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCCCACCCCCGGGGTGTATGAGATCGTGGGTAAAGCAACCATTC  350

seq1  AGGCATGGACATGCCACACCAGGGGGTATTTAAGCAGCACCTTTCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGACATGCCACACCAGGGGGTATTTAAGCAGCACCTTTCTGAGG  400

seq1  CTTCTTTGTCTTCCTCAACAATATGTAATAAAGTTTGGCTGCAGAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGTCTTCCTCAACAATATGTAATAAAGTTTGGCTGCAGAAGGAT  450

seq1  TCTTGTGTCCCTTGTGCATTCTTGCTAGCGAGAACAATAGCTCGGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTCCCTTGTGCATTCTTGCTAGCGAGAACAATAGCTCGGGAAAT  500

seq1  AATGGCGCCGAAACCCGGGAACGCCTTACCATCGCTGGGTGCCAAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGCCGAAACCCGGGAACGCCTTACCATCGCTGGGTGCCAAGGGGG  550

seq1  CCCCCCACTCGTGGGGAGGGATCCAGAACTGCAGGACTTGAAGGTAAGCT  600
       |||||||||||||||||||||||||||||||| ||||||| |   ||||
seq2  -CCCCCACTCGTGGGGAGGGATCCAGAACTGCA-GACTTGATG--TAGCT  596

seq1  CTGAGAGACATGTGAAACATGTCAGAAACAGAGCGGGGTAAAAGATTAAG  650
      ||||||||||||||||||||||||||||||||||||| |  |||||  ||
seq2  CTGAGAGACATGTGAAACATGTCAGAAACAGAGCGGGTT--AAGAT--AG  642

seq1  AGCTCAGAGAAAATAATTAAGAAATAAGGCCCTTCCAAAGACCTTGGATC  700
      ||||||||||||   ||||   ||||     ||||| |||||||| ||| 
seq2  AGCTCAGAGAAA--TATTA--GAATA---GTCTTCC-AAGACCTT-GATT  683

seq1  CGAGGAAGTGAAAGAATTGGGGAAAGGACGCCCCTGAGAGAGGATAAGGA  750
      ||||| |||||||| ||||||  |||||| | |||| |||| ||  ||| 
seq2  CGAGG-AGTGAAAG-ATTGGG--AAGGACCCTCCTG-GAGAAGAATAGG-  727

seq1  AAAGAAGGAGAAAGCCCCAAAAAAGACAAGAGTAGCTGGACAC-AAAAGT  799
      |||||||  |||||| |   ||||||| || |||||| ||||| ||||||
seq2  AAAGAAG--GAAAGCTC---AAAAGACCAG-GTAGCT-GACACAAAAAGT  770

seq1  CAGC  803
      ||||
seq2  CAGC  774