BAC Information

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BAC

Clone NameB6Ng01-135I04
Chromosome4 (Build37)
Map Location 140,769,820 - 140,930,373
singlet/doubletdoublet
Overlap gene6330545A04Rik, Arhgef19, Epha2, Gm693
Upstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42
Downstream geneClcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I04.bB6Ng01-135I04.g
ACCDH935527DH935528
length1,0831,041
definitionDH935527|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I04, 5' end.DH935528|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,769,820 - 140,770,902)(140,929,332 - 140,930,373)
sequence
gaattcaggagccccgcctccgcctgcgtcgccatggcaacatttctgcg
catgcgcttcgtggtcagcgtcttgacctgacggaagcaggctctgctgg
caggacagaaaagaagggcgggcttttaaatcgtcaccctgctggcgggg
actgtgaaggttggtggtcccgggagtcggaattgagggggtagaggcga
agtggggctcggaaggagataaggcagaggggacttgtggaaataccttc
ccaggacaaggatgggttagttccccagagagcaatgtagaaggatgggg
ctatagaaatgcaccttcgggatggggatccaggttccaaaggaaagcca
gagagagattaaggacctcggagtcgccttgcgataatggttggccctct
ctccacttctactcccagtattcggacacatccttaccttactggcgtac
tcaagcatggccagacctcccatgcacggttcggtgattgtcccagactg
gcatgagacggtcgagggtaaggagtacttagcctgcatcctgcgcaaga
atcgccggcgggagtttggtaagcggcaccccacctcaccccacccccgt
cccccagacctcaccacgtgccactagtacactcttgacactccctgggg
cggcaggaacagatctgtggaacctgccccacagcacttctgaccatcga
ggtctcctgggtgccgcctctagcctctagtctcaggcccccttcccaaa
tctccttaaagctaattccaccaacagagccaggaacctggaaacagccc
atgcctgccaacagcaactgtcaccagagatgctgttgactgagccctca
cttggggtcatgccctctgctgggcactttgcacagcaacccttgcaacc
ttgtttaaaaaagcgtttcactatgttgccagtattcattgttgtgtatc
cagtactgggttatgtagaccaggctgacctcaaactcacagagatccac
ctggcctctatcttctaagtgctggatcaaagtcacagcaatcaccacac
catgtcctgcctatcaaccttcttttatttatt
gaattctgtatgttgtgcaaagcctgagtctgtctagctgcagggtggtg
ctgggtacctgaatgggtgtcagggtgcttctagactccctgggggctct
tcagctacagagcaacgggtgacagggatggtaaggagccagcacagcag
gtgacaccagaggctggctgaggtgctggtgggctggtggcctcctggct
tcaacctcccctgcctgcctgacctccctcccatctgggatccaggcgcc
ctaactaagtctccctctgtccctggagactttagccccatgatgtcatg
gcctggttgccatcgcaaagtcaggtaatgaagcagcccagggtgaagtc
acaggctgctcttagcccagctgggacctggctgcatcatggccttggtg
actggaaaaacacattgtcacgtagggtggggctggggggacagctcaag
ggacctctaatgcctgctattttggaagctttccccaagggagtcttgtg
gtgacactctcctccttttacagcgtataccctacacctttgacctcaat
gtccgagaccccttcttgaacctgctccctccctcacctcctcggactac
aggagtgactgctccctggttgccatggcaacatgaagaccaaaaaaggg
gtgtcacccagagatccccatccatccttctgcttatcaagaatgctttc
acaattgccgggcgtggtggtgcacgcctttaatcccagcacttgggagg
cagaggcaggtggatttctgagttctaggtcagcctggtctacaaagtga
gttccaggacagccagggctacacagagtaaccctgtctcaaaaaaccaa
aaaaaaaaaaaaaaaaagaatgcttcgcaatcagacagtcagcctaacca
cccagacattctccataatatctaacctggggtctcatgctggcgacgat
tccccaccaacctattttccctgcttggttcctgggctgactctgaagca
tagcccctcagtttctcctcacttgctcgaatcttcccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140769820_140770902
seq2: B6Ng01-135I04.b_46_1128

seq1  GAATTCAGGAGCCCCGCCTCCGCCTGCGTCGCCATGGCAACATTTCTGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGCCCCGCCTCCGCCTGCGTCGCCATGGCAACATTTCTGCG  50

seq1  CATGCGCTTCGTGGTCAGCGTCTTGACCTGACGGAAGCAGGCTCTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCTTCGTGGTCAGCGTCTTGACCTGACGGAAGCAGGCTCTGCTGG  100

seq1  CAGGACAGAAAAGAAGGGCGGGCTTTTAAATCGTCACCCTGCTGGCGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGAAAAGAAGGGCGGGCTTTTAAATCGTCACCCTGCTGGCGGGG  150

seq1  ACTGTGAAGGTTGGTGGTCCCGGGAGTCGGAATTGAGGGGGTAGAGGCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAGGTTGGTGGTCCCGGGAGTCGGAATTGAGGGGGTAGAGGCGA  200

seq1  AGTGGGGCTCGGAAGGAGATAAGGCAGAGGGGACTTGTGGAAATACCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCTCGGAAGGAGATAAGGCAGAGGGGACTTGTGGAAATACCTTC  250

seq1  CCAGGACAAGGATGGGTTAGTTCCCCAGAGAGCAATGTAGAAGGATGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAAGGATGGGTTAGTTCCCCAGAGAGCAATGTAGAAGGATGGGG  300

seq1  CTATAGAAATGCACCTTCGGGATGGGGATCCAGGTTCCAAAGGAAAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAATGCACCTTCGGGATGGGGATCCAGGTTCCAAAGGAAAGCCA  350

seq1  GAGAGAGATTAAGGACCTCGGAGTCGCCTTGCGATAATGGTTGGCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATTAAGGACCTCGGAGTCGCCTTGCGATAATGGTTGGCCCTCT  400

seq1  CTCCACTTCTACTCCCAGTATTCGGACACATCCTTACCTTACTGGCGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTCTACTCCCAGTATTCGGACACATCCTTACCTTACTGGCGTAC  450

seq1  TCAAGCATGGCCAGACCTCCCATGCACGGTTCGGTGATTGTCCCAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATGGCCAGACCTCCCATGCACGGTTCGGTGATTGTCCCAGACTG  500

seq1  GCATGAGACGGTCGAGGGTAAGGAGTACTTAGCCTGCATCCTGCGCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGACGGTCGAGGGTAAGGAGTACTTAGCCTGCATCCTGCGCAAGA  550

seq1  ATCGCCGGCGGGAGTTTGGTAAGCGGCACCCCACCTCACCCCACCCCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCGGCGGGAGTTTGGTAAGCGGCACCCCACCTCACCCCACCCCCGT  600

seq1  CCCCCAGACCTCACCACGTGCCACTAGTACACTCTTGACACTCCCTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGACCTCACCACGTGCCACTAGTACACTCTTGACACTCCCTGGGG  650

seq1  CGGCAGGAACAGATCTGTGGAACCTGCCCCACAGCACTTCTGACCATCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGAACAGATCTGTGGAACCTGCCCCACAGCACTTCTGACCATCGA  700

seq1  GGTCTCCTGGGTGCCGCCTCTAGCCTCTAGTCTCAGGCCCCCTTCCCCAA  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTCTCCTGGGTGCCGCCTCTAGCCTCTAGTCTCAGGCCCCCTT-CCCAA  749

seq1  ATCTCCTTAAAGCTAATTCCACCAACAGAGCCAGGAACCTGGAAACAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTAAAGCTAATTCCACCAACAGAGCCAGGAACCTGGAAACAGCC  799

seq1  CATGCCTGCCAACAGCAACTGTCACCAGAGATGCTGTTGACTGAGCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGCCAACAGCAACTGTCACCAGAGATGCTGTTGACTGAGCCCTC  849

seq1  ACTTGGGGTCATGCCCTCTGCTGGGCACTTTGCACAGCAA-CCTTGCAAC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTTGGGGTCATGCCCTCTGCTGGGCACTTTGCACAGCAACCCTTGCAAC  899

seq1  CTTGTTTCAGAAAGCGTTTCACTATGTTGCCAGTATTCATTGTTGTGTAT  949
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTAAAAAAGCGTTTCACTATGTTGCCAGTATTCATTGTTGTGTAT  949

seq1  CCAGTACT-GGTTATGTAGACCAGGCTGACCTCAAACTCACAGAGATCCA  998
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTGGGTTATGTAGACCAGGCTGACCTCAAACTCACAGAGATCCA  999

seq1  CCTGGCCTCTATCTTCTAAGTGCTGGGATCAAAGTCAC-GC-ATCACCAC  1046
      |||||||||||||||||||||||| ||||||||||||| || ||||||||
seq2  CCTGGCCTCTATCTTCTAAGTGCT-GGATCAAAGTCACAGCAATCACCAC  1048

seq1  ACCATGTCCTGCCTATTCAACTTTCTATTTATTTATT  1083
      ||||||||||||||| ||||| |||| ||||||||||
seq2  ACCATGTCCTGCCTA-TCAACCTTCT-TTTATTTATT  1083

seq1: chr4_140929332_140930373
seq2: B6Ng01-135I04.g_65_1105 (reverse)

seq1  TCTGGGAAGCTCTGAAGCAAGTGAGAGGAAACTGAGGGGCTATGCCTCAG  50
      ||||||||| | |  ||||||||||  |||||||||||||||||| ||||
seq2  TCTGGGAAGAT-TCGAGCAAGTGAGGAGAAACTGAGGGGCTATGCTTCAG  49

seq1  AGTCAG-CCAGGAACCAAGCAGGGAAAATAAGGTTGGTGGGGAATCGTCG  99
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  AGTCAGCCCAGGAACCAAGCAGGGAAAAT-AGGTTGGTGGGGAATCGTCG  98

seq1  -CAGCATGAAGAACCCAGGTTAGATATTATGGAGAACTGTCTGGGTGGTT  148
       ||||||| ||| ||||||||||||||||||||||| |||||||||||||
seq2  CCAGCATG-AGACCCCAGGTTAGATATTATGGAGAA-TGTCTGGGTGGTT  146

seq1  AGGCTGACTGTCTGATTGCGAAGCATTCTTTTTTTTTTTTTTTTTTTGGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTGTCTGATTGCGAAGCATTCTTTTTTTTTTTTTTTTTTTGGT  196

seq1  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTTACTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  246

seq1  TTGTAGACCAGGCTGACCTAGAACTCAGAAATCCACCTGCCTCTGCCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGACCTAGAACTCAGAAATCCACCTGCCTCTGCCTCC  296

seq1  CAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCGGCAATTGTG-AAG  347
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCGGCAATTGTGAAAG  346

seq1  CATTCTTGATAAGCAGAAGGATGGATGGGGATCTCTGGGTGACACCCCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGATAAGCAGAAGGATGGATGGGGATCTCTGGGTGACACCCCTT  396

seq1  TTTTGGTCTTCATGTTGCCATGGCAACCAGGGAGCAGTCACTCCTGTAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCTTCATGTTGCCATGGCAACCAGGGAGCAGTCACTCCTGTAGT  446

seq1  CCGAGGAGGTGAGGGAGGGAGCAGGTTCAAGAAGGGGTCTCGGACATTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGAGGTGAGGGAGGGAGCAGGTTCAAGAAGGGGTCTCGGACATTGA  496

seq1  GGTCAAAGGTGTAGGGTATACGCTGTAAAAGGAGGAGAGTGTCACCACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGGTGTAGGGTATACGCTGTAAAAGGAGGAGAGTGTCACCACAA  546

seq1  GACTCCCTTGGGGAAAGCTTCCAAAATAGCAGGCATTAGAGGTCCCTTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTTGGGGAAAGCTTCCAAAATAGCAGGCATTAGAGGTCCCTTGA  596

seq1  GCTGTCCCCCCAGCCCCACCCTACGTGACAATGTGTTTTTCCAGTCACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCCCCAGCCCCACCCTACGTGACAATGTGTTTTTCCAGTCACCA  646

seq1  AGGCCATGATGCAGCCAGGTCCCAGCTGGGCTAAGAGCAGCCTGTGACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGATGCAGCCAGGTCCCAGCTGGGCTAAGAGCAGCCTGTGACTT  696

seq1  CACCCTGGGCTGCTTCATTACCTGACTTTGCGATGGCAACCAGGCCATGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGGCTGCTTCATTACCTGACTTTGCGATGGCAACCAGGCCATGA  746

seq1  CATCATGGGGCTAAAGTCTCCAGGGACAGAGGGAGACTTAGTTAGGGCGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGGGCTAAAGTCTCCAGGGACAGAGGGAGACTTAGTTAGGGCGC  796

seq1  CTGGATCCCAGATGGGAGGGAGGTCAGGCAGGCAGGGGAGGTTGAAGCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCCAGATGGGAGGGAGGTCAGGCAGGCAGGGGAGGTTGAAGCCA  846

seq1  GGAGGCCACCAGCCCACCAGCACCTCAGCCAGCCTCTGGTGTCACCTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCACCAGCCCACCAGCACCTCAGCCAGCCTCTGGTGTCACCTGCT  896

seq1  GTGCTGGCTCCTTACCATCCCTGTCACCCGTTGCTCTGTAGCTGAAGAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCTCCTTACCATCCCTGTCACCCGTTGCTCTGTAGCTGAAGAGC  946

seq1  CCCCAGGGAGTCTAGAAGCACCCTGACACCCATTCAGGTACCCAGCACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGAGTCTAGAAGCACCCTGACACCCATTCAGGTACCCAGCACCA  996

seq1  CCCTGCAGCTAGACAGACTCAGGCTTTGCACAACATACAGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGCTAGACAGACTCAGGCTTTGCACAACATACAGAATTC  1041