BAC Information

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BAC

Clone NameB6Ng01-135J01
Chromosome4 (Build37)
Map Location 85,028,077 - 85,180,832
singlet/doubletdoublet
Overlap geneSh3gl2, A930009N24
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135J01.bB6Ng01-135J01.g
ACCDH935569DH935570
length1,0671,136
definitionDH935569|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J01, 5' end.DH935570|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,028,077 - 85,029,142)(85,179,698 - 85,180,832)
sequence
gaattcctcctctcatctacagaacaacatagcctagcattaagtgtgac
gtagaatgtcagtgggctatgctgtgatcatggctgggtagaatttgggg
tacctgcacctataaaagttcattatactacatgttgcagccctaagaaa
atatcagaatttagggcacaatttctattgcataggaatcccttttacat
cattataatatcaaaagaatattgaagtgaaccatcttaaggcaggggcc
ttattaattataccttatttagccaggtgacatcattatcaaccaaggat
cttgttattcttgcttcatttagctacatgaaggaggaaattttcctaaa
tcaatatatcaaagaattttgtagcagcctttacctttaagatcatgtcc
agagtacaccttcctgggtgattagtggctgagtgtccagtgagaccttc
agtcataagtcatatgctgcattgttttggactagctggccttcccatca
ccttagatccttctttgatttgtgcttttttagtataaaccttcaattca
cccttgcagaagtgtatttaactctgaagcttctctagtagaaaggctta
aaataaatgtatcagaacaccagccacactatgtacctctcacttctgtt
gaagatgaagggagtatgttcactctcttttttcatctcaaacatgctct
tttattttttttttattttcatttttatttattcacttcacatcccactc
agtattccccctccaggtcacacactcctacaattcttcctgcataaccc
tccccttctcctctgagtgagccctcccccctgtatgtccccaccctggg
cagtttaattctctgtgagggtgggtgcttcctcttcccactgaggtcag
ataaagcatcccaggtatataaataatcccacatacaggcaacagctttt
ggggatagccccatccaagtggtcaggaccacatgaagaccatggtgcca
atcctgctgcatatgattgggggcggggaagggggtctagtgccagcctt
gtaaagtctttgtttgg
gaattccttggccatggcgtttcttcacagcaatcgagcagtgactaagg
cagctcctgttccagcagctgatggaagagtggccaatggccctggaagt
accagcttagctctcagaggctacagaaaccacaatgtagtaggacaact
tcaaggaagagacatggaattctgagtgaccaacagactccccaaatctc
acccagctagcatttggccatgcgaagtaatctgcttaggggaaaaatta
aaaaaaaaaatgtccagcaggaagggtatgctgccagagatggtcaaaga
ggctcacaagtggaccggagtcaaatgccattcaaatactccagtctgca
gggatgctgatgagccctctccatgaagcatttagcgtgagctacagctt
taactgaaaccgtttcttataatgcacaggaaaagatgatgatctaccaa
cttgtttcatatcatcaaagcttcaggattcttccaacctatagatcctt
gggtttgggaatttgtctttgtctagctctgatcctcagtggagcttggc
acaaatatcccgacttgtcataagacaacgcactcaagaaagtgtgataa
ctttctgataaatgtcatcacgatgcctaagacttcatcagaagcagaag
aacaggatagtggtggcctcaaataccatcttcttcaagaggttaaagaa
aaagaaaaaaaaacagctcaaataagtacagtagttatgcctctgaaaaa
atatccaatttgcaaattatctattttgaaaattttgaattgaaaatgta
caaggtttgggttctgtggcttgtgtcaaaatgggcttctctaagatcat
tcagaaagacagcaaggtaagagtaagaaagatgatacaagggcatttct
caagaactcctcagtatagctgaaaatgcctccttaaacacacaagctca
gaatagtttccttttttttttttttcctgctaaagaaaagagtttttaaa
agagttcaggggaagctcaaaagctaccggaaaaaaaaacctgggctcaa
tttcctgcctcctattccctgccatagggaaaggataggccagttaccct
tggcctccacaagacctacggcaatgtcatcacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85028077_85029142
seq2: B6Ng01-135J01.b_42_1108

seq1  GAATTCCTCCTCTCATCTACAGAACAACATAGCCTAGCATTAAGTGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTCTCATCTACAGAACAACATAGCCTAGCATTAAGTGTGAC  50

seq1  GTAGAATGTCAGTGGGCTATGCTGTGATCATGGCTGGGTAGAATTTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATGTCAGTGGGCTATGCTGTGATCATGGCTGGGTAGAATTTGGGG  100

seq1  TACCTGCACCTATAAAAGTTCATTATACTACATGTTGCAGCCCTAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCACCTATAAAAGTTCATTATACTACATGTTGCAGCCCTAAGAAA  150

seq1  ATATCAGAATTTAGGGCACAATTTCTATTGCATAGGAATCCCTTTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGAATTTAGGGCACAATTTCTATTGCATAGGAATCCCTTTTACAT  200

seq1  CATTATAATATCAAAAGAATATTGAAGTGAACCATCTTAAGGCAGGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAATATCAAAAGAATATTGAAGTGAACCATCTTAAGGCAGGGGCC  250

seq1  TTATTAATTATACCTTATTTAGCCAGGTGACATCATTATCAACCAAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTATACCTTATTTAGCCAGGTGACATCATTATCAACCAAGGAT  300

seq1  CTTGTTATTCTTGCTTCATTTAGCTACATGAAGGAGGAAATTTTCCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTCTTGCTTCATTTAGCTACATGAAGGAGGAAATTTTCCTAAA  350

seq1  TCAATATATCAAAGAATTTTGTAGCAGCCTTTACCTTTAAGATCATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATCAAAGAATTTTGTAGCAGCCTTTACCTTTAAGATCATGTCC  400

seq1  AGAGTACACCTTCCTGGGTGATTAGTGGCTGAGTGTCCAGTGAGACCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACACCTTCCTGGGTGATTAGTGGCTGAGTGTCCAGTGAGACCTTC  450

seq1  AGTCATAAGTCATATGCTGCATTGTTTTGGACTAGCTGGCCTTCCCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAAGTCATATGCTGCATTGTTTTGGACTAGCTGGCCTTCCCATCA  500

seq1  CCTTAGATCCTTCTTTGATTTGTGCTTTTTTAGTATAAACCTTCAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGATCCTTCTTTGATTTGTGCTTTTTTAGTATAAACCTTCAATTCA  550

seq1  CCCTTGCAGAAGTGTATTTAACTCTGAAGCTTCTCTAGTAGAAAGGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCAGAAGTGTATTTAACTCTGAAGCTTCTCTAGTAGAAAGGCTTA  600

seq1  AAATAAATGTATCAGAACACCAGCCACACTATGTACCTCTCACTTCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGTATCAGAACACCAGCCACACTATGTACCTCTCACTTCTGTT  650

seq1  GAAGATGAAGGGAGTATGTTCACTCTC-TTTTTCATCTCAAACATGCTCT  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGATGAAGGGAGTATGTTCACTCTCTTTTTTCATCTCAAACATGCTCT  700

seq1  TTTATTTTTTTTTTATTTTCATTTTTATTTATTCACTTCACATCCCACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTTTTATTTTCATTTTTATTTATTCACTTCACATCCCACTC  750

seq1  AGTATTCCCCCTCCAGGTCACACACTCCTACAATTCTTCCTGCATAACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCCCCCTCCAGGTCACACACTCCTACAATTCTTCCTGCATAACCC  800

seq1  TCCCCTTCTCCTCTGAGTGAGCCCTCCCCCCTGTATGTCCCCACCCT-GG  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCCCTTCTCCTCTGAGTGAGCCCTCCCCCCTGTATGTCCCCACCCTGGG  850

seq1  CAGTTTAATTCTCTGTGAGGGTGGGTGCTTCCTC-TCCCACTGAGGTCAG  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGTTTAATTCTCTGTGAGGGTGGGTGCTTCCTCTTCCCACTGAGGTCAG  900

seq1  ATAAAGCAGCCCAGGTAGTATAATATATCCCACATACAGGCAACAGCTTT  947
      |||||||| |||||||| |||||   ||||||||||||||||||||||||
seq2  ATAAAGCATCCCAGGTA-TATAAATAATCCCACATACAGGCAACAGCTTT  949

seq1  T-GGGATAGCCCCCATCCAAGTTGTTCAGGACCCACATGAAGACCATGTT  996
      | ||||||| ||||||||||| || |||||| |||||||||||||||| |
seq2  TGGGGATAG-CCCCATCCAAG-TGGTCAGGA-CCACATGAAGACCATGGT  996

seq1  GCACAT-CTGCTGCATATGATTGGGGGCGGGG-AGGGGGTCTAGGTCCAG  1044
      ||  || ||||||||||||||||||||||||| |||||||||||  ||||
seq2  GCCAATCCTGCTGCATATGATTGGGGGCGGGGAAGGGGGTCTAGTGCCAG  1046

seq1  CCCTTGTAAGTTCTTTGGTTGG  1066
       ||||||||  |||||| ||||
seq2  -CCTTGTAAAGTCTTTGTTTGG  1067

seq1: chr4_85179698_85180832
seq2: B6Ng01-135J01.g_68_1203 (reverse)

seq1  TCTGTGAAATGACATTGCCGTAGTTC-TGTGTGAGCCAAGGGTAACCTGG  49
      ||||||  ||||||||||||||| || ||||   ||||||||||||  | 
seq2  TCTGTG--ATGACATTGCCGTAGGTCTTGTGGAGGCCAAGGGTAACTGGC  48

seq1  CTATCCTTT-CCTATGCCAGGGAATAGGA-GCAGAAATTTGAGCCCAG--  95
      ||||||||| |||||| |||||||||||| |||| || ||||||||||  
seq2  CTATCCTTTCCCTATGGCAGGGAATAGGAGGCAGGAAATTGAGCCCAGGT  98

seq1  -TGTTTTTTCTGTAGCTTTTGAGCTTCCCCCTGAACTCTTTTATAAAACT  144
       | ||||| | ||||||||||||||| |||||||||||||||| ||||||
seq2  TTTTTTTTCCGGTAGCTTTTGAGCTT-CCCCTGAACTCTTTTA-AAAACT  146

seq1  CTTTTCTTTAGCAGGAAAAAAAAAAAAAGGAAACCTATTCTGAGCTTGTG  194
      |||||||||||||||||||||||||||| | || ||||||||||||||||
seq2  CTTTTCTTTAGCAGGAAAAAAAAAAAAAAGGAAACTATTCTGAGCTTGTG  196

seq1  TGTTTAAGGAGGCATTGTCAGCTATACTGAGGAGTTCTTGAGAAATGCCC  244
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTTTAAGGAGGCATTTTCAGCTATACTGAGGAGTTCTTGAGAAATGCCC  246

seq1  TTGTATCATCTTTCTTACTCTTACCTTGCTGTCTTTTCTGAATGATCTTA  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGTATCATCTTTCTTACTCTTACCTTGCTGTC-TTTCTGAATGATCTTA  295

seq1  GAGAAGCCCATTTTGACACAAGCCACAGAACCCAAACCTTGTACATTTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCCATTTTGACACAAGCCACAGAACCCAAACCTTGTACATTTTC  345

seq1  AATTCAAAATTTTCAAAATAGATAATTTGCAAATTGGATATTTTTTCAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATTTTCAAAATAGATAATTTGCAAATTGGATATTTTTTCAGA  395

seq1  GGCATAACTACTGTACTTATTTGAGCTGTTTTTTTTTCTTTTTCTTTAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAACTACTGTACTTATTTGAGCTGTTTTTTTTTCTTTTTCTTTAAC  445

seq1  CTCTTGAAGAAGATGGTATTTGAGGCCACCACTATCCTGTTCTTCTGCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAAGAAGATGGTATTTGAGGCCACCACTATCCTGTTCTTCTGCTT  495

seq1  CTGATGAAGTCTTAGGCATCGTGATGACATTTATCAGAAAGTTATCACAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAAGTCTTAGGCATCGTGATGACATTTATCAGAAAGTTATCACAC  545

seq1  TTTCTTGAGTGCGTTGTCTTATGACAAGTCGGGATATTTGTGCCAAGCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAGTGCGTTGTCTTATGACAAGTCGGGATATTTGTGCCAAGCTC  595

seq1  CACTGAGGATCAGAGCTAGACAAAGACAAATTCCCAAACCCAAGGATCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGATCAGAGCTAGACAAAGACAAATTCCCAAACCCAAGGATCTA  645

seq1  TAGGTTGGAAGAATCCTGAAGCTTTGATGATATGAAACAAGTTGGTAGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGAAGAATCCTGAAGCTTTGATGATATGAAACAAGTTGGTAGAT  695

seq1  CATCATCTTTTCCTGTGCATTATAAGAAACGGTTTCAGTTAAAGCTGTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTTTTCCTGTGCATTATAAGAAACGGTTTCAGTTAAAGCTGTAG  745

seq1  CTCACGCTAAATGCTTCATGGAGAGGGCTCATCAGCATCCCTGCAGACTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTAAATGCTTCATGGAGAGGGCTCATCAGCATCCCTGCAGACTG  795

seq1  GAGTATTTGAATGGCATTTGACTCCGGTCCACTTGTGAGCCTCTTTGACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTGAATGGCATTTGACTCCGGTCCACTTGTGAGCCTCTTTGACC  845

seq1  ATCTCTGGCAGCATACCCTTCCTGCTGGACATTTTTTTTTTTAATTTTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGCAGCATACCCTTCCTGCTGGACATTTTTTTTTTTAATTTTTC  895

seq1  CCCTAAGCAGATTACTTCGCATGGCCAAATGCTAGCTGGGTGAGATTTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGCAGATTACTTCGCATGGCCAAATGCTAGCTGGGTGAGATTTGG  945

seq1  GGAGTCTGTTGGTCACTCAGAATTCCATGTCTCTTCCTTGAAGTTGTCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGTTGGTCACTCAGAATTCCATGTCTCTTCCTTGAAGTTGTCCT  995

seq1  ACTACATTGTGGTTTCTGTAGCCTCTGAGAGCTAAGCTGGTACTTCCAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTGTGGTTTCTGTAGCCTCTGAGAGCTAAGCTGGTACTTCCAGG  1045

seq1  GCCATTGGCCACTCTTCCATCAGCTGCTGGAACAGGAGCTGCCTTAGTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGCCACTCTTCCATCAGCTGCTGGAACAGGAGCTGCCTTAGTCA  1095

seq1  CTGCTCGATTGCTGTGAAGAAACGCCATGGCCAAGGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCGATTGCTGTGAAGAAACGCCATGGCCAAGGAATTC  1136