BAC Information

Click to search

BAC

Clone NameB6Ng01-135M12
Chromosome4 (Build37)6 (Build37)
Map Location 58,380,641 - 58,381,53198,419,252 - 98,420,099
singlet/doubletsingletsinglet
Overlap geneMusk
Upstream geneLOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
Downstream geneEdg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135M12.bB6Ng01-135M12.g
ACCDH935733DH935734
length960850
definitionDH935733|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M12, 5' end.DH935734|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,380,641 - 58,381,531)(98,419,252 - 98,420,099)
sequence
gaattctatagaaacatacacacacacacacacacacacacacacacaca
cacagagagagagagagagagagagagagagagagagagagagagaaaga
aaacaaggatagctaaaataattttgaataataaaacaaaacaaaccact
gctggagataccaccactcctggttttaagtagtactatagagctatagt
tttaaaagaaagcagcaggggattggcacaaaaacagacatattgatcaa
tggaatacaattgaagacccggatataaatctatacagatatggatatct
gctttttggtaaagaagccagaaatacatactgaaaaacaaaaacaaaca
aacaaacaaacaaaaaccaaaagcaaaacccagtatcttcaacaaaagat
gctagtcgaactggatggctacatgtagaagaatgcaaacagatccatac
ttatcaccctgcacaaaactcagctctaaaggaatcaaagaccttaacat
aaaaccagatatattgaacctgacagaaaagaaagtgggaaattgtcttt
aactcattgacacaggaaagtgcttttgaagagaacaccattggcttcat
gcagaagaataaaacttgatccttatctctcacacttaacaaaactcaat
tccaaatgtatcaaaggtctggaataagccccaatactctgaatctaata
caagagaaagtttggactatgtataggctgagaagaggactttctaatag
tagctcaataccccagcttcttacagcaaggcacaccatcatttgagtga
agaggcagcctacagaatggaaaaaaattaccagctatatattttgaaag
aaggtcagtatcttgaatacaggaaggcttttaaattgaacatcaagaaa
caattaaagtggggatatggactaaccagatgtttcaaaagatgaaatac
caatggctga
gaattcatttatgttttcaaagataaatggctttgaactgttacttcaga
gtttaagaaaaacaaatgattttcttctcctcagaggtgagtcaggtatg
gctctcactagcaggttttggtggaagagaaatgtatgcgtgagtctatc
atcacaatccatgtctcatcccaattcttcaaagtcccgtcagctgcata
tgtccctcatgctcccactctccagggagttattctagagtttctcacct
gaaaacgtcttcacatgcctgctcttactactatacaaccatgcacagag
tgcccaagatgttgtggggacagtttggtagagtgacactcacccaccag
atctgctgatgaggaggagtatgaatgcctagctccctcacctccagtgg
gcacaaatggggtataccttaaatgccagcacccacttcattactaggct
gaggttaggactttgcctcagatcaaatccttggtggcttctgaatctac
agctgtctggtttcctctccataccgttttctccagggaacatagtctca
actatcccttatcctgaattcttgtcttaagttggatatttttgaaaagg
tctcactttcaagcaaggtcattcccaaggtaatttgtgtttggattttt
aaaaaaatccgtttttggagatacagctctgcccaaaacagtaagccaag
atatgtcagggtgaagtacaatatttagatttggagacctcaaagatagc
agcatcacccagccacaaaacagatcatagacacttagcatgttcactag
cccctctttcctctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58380641_58381531
seq2: B6Ng01-135M12.b_62_426 (reverse)

seq1  TGGGTTTTTTTGGTTTTTTGTTTGTTTGTTTGTTTGTTTTTGCCTGCATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TACGTCTGTGATGTGGGTGCAGTGCCCTCAGAGGCGAGAAGAGGGCGGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AATCTCCTGAGACTGGAGGTACTTACAGATGCGTGTAAACCACTCTGAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCTGGAAAAGCAGTGTTCTAAGCCTTCTCTCTACCTCCACAGGCTTTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTAAATTTTAATGTTCCCCCTTCCACTAGAAAGTAGCATGTCTAGAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAATGTAGTTTGCTGAATATAAATATAAAATTTATAGAAAATCTCATG  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGTAGTTTATTAGAAATTACTAATAATCCAATCATCATTTCTTTCTAGAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  AATAATTTTCATGTTTTAACCATTATTTCTTACATTGCTCTTATAATAAT  400
                                                       |
seq2  -------------------------------------------------T  1

seq1  CCGTATTTACTTCTTTTTTTCTCTCTCTCTCATCATTTTCTGCTTCATTT  450
        || ||| ||| |  |||                || | || ||  || 
seq2  GGGT-TTTGCTTTTGGTTT----------------TTGTTTGTTTGTTT-  33

seq1  AAAGTTT-TCTTTGAATTATATTATAGTCAATCATTGCCCATTTTGTTTG  499
         |||| | ||||  ||  | ||| ||  ||   || |    || ||| 
seq2  ---GTTTGTTTTTGTTTTTCAGTAT-GT--ATTTCTGGC----TTCTTT-  72

seq1  AAATGGGATAAAATACCTACTCTGTGTGGGCACAAATCCACAGACGCATA  549
             |  ||| |              ||| | ||||| |   | |||
seq2  -------ACCAAAAA--------------GCAGATATCCATATCTGTATA  101

seq1  GCTGGGCAACCGGATATGGGCTTGGATTTAATCACCAGTGGTCACTCT--  597
      | |    | |||| | |    ||| |||      ||| || ||| | |  
seq2  GATTTATATCCGGGTCTTCAATTGTATT------CCATTGATCAATATGT  145

seq1  -CATCCTTGAGCAGATGTCATCCTACTTCCACTTAAA---GTAGCCTTGA  643
         |  ||| ||  ||  | | || ||| |  |||||    ||| ||  |
seq2  CTGTTTTTGTGCCAATCCCCTGCTGCTTTCTTTTAAAACTATAG-CTCTA  194

seq1  TATTGAGATTACATTTAAAGTGAAATTTCACACACTTACTGTGCAATTGG  693
      || |   | |||  |||||                  ||           
seq2  TAGT---ACTAC--TTAAA------------------AC-----------  210

seq1  CAAGATACAACCTTACACTGTGTTGGGGGAAGACAGACAAGCAGTCAGCC  743
      || ||              ||| |||                        
seq2  CAGGA--------------GTGGTGG------------------------  222

seq1  ATAGTCTCCAAGCTCAGG--AATTTGGATTCAGGCTAACCAGTAGGAGGT  791
       || ||||| |||   ||    ||| | || |   ||  ||  |  |  |
seq2  -TA-TCTCC-AGCAGTGGTTTGTTTTGTTTTA--TTATTCAAAATTATTT  267

seq1  TA-CAATGCAATTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  840
      || | || |  |||| | ||| ||||||||||||||||||||||||||||
seq2  TAGCTATCC--TTGT-TTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC  314

seq1  TCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  364

seq1  T  891
      |
seq2  T  365

seq1: chr6_98419252_98420099
seq2: B6Ng01-135M12.g_69_918

seq1  GAATTCATTTATGTTTTCAAAGATAAATGGCTTTGAACTGTTACTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATGTTTTCAAAGATAAATGGCTTTGAACTGTTACTTCAGA  50

seq1  GTTTAAGAAAAACAAATGATTTTCTTCTCCTCAGAGGTGAGTCAGGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAAAAACAAATGATTTTCTTCTCCTCAGAGGTGAGTCAGGTATG  100

seq1  GCTCTCACTAGCAGGTTTTGGTGGAAGAGAAATGTATGCGTGAGTCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCACTAGCAGGTTTTGGTGGAAGAGAAATGTATGCGTGAGTCTATC  150

seq1  ATCACAATCCATGTCTCATCCCAATTCTTCAAAGTCCCGTCAGCTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATCCATGTCTCATCCCAATTCTTCAAAGTCCCGTCAGCTGCATA  200

seq1  TGTCCCTCATGCTCCCACTCTCCAGGGAGTTATTCTAGAGTTTCTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCATGCTCCCACTCTCCAGGGAGTTATTCTAGAGTTTCTCACCT  250

seq1  GAAAACGTCTTCACATGCCTGCTCTTACTACTATACAACCATGCACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGTCTTCACATGCCTGCTCTTACTACTATACAACCATGCACAGAG  300

seq1  TGCCCAAGATGTTGTGGGGACAGTTTGGTAGAGTGACACTCACCCACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGATGTTGTGGGGACAGTTTGGTAGAGTGACACTCACCCACCAG  350

seq1  ATCTGCTGATGAGGAGGAGTATGAATGCCTAGCTCCCTCACCTCCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGATGAGGAGGAGTATGAATGCCTAGCTCCCTCACCTCCAGTGG  400

seq1  GCACAAATGGGGTATACCTTAAATGCCAGCACCCACTTCATTACTAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAATGGGGTATACCTTAAATGCCAGCACCCACTTCATTACTAGGCT  450

seq1  GAGGTTAGGACTTTGCCTCAGATCAAATCCTTGGTGGCTTCTGAATCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGGACTTTGCCTCAGATCAAATCCTTGGTGGCTTCTGAATCTAC  500

seq1  AGCTGTCTGGTTTCCTCTCCATACCGTTTTCTCCAGGGAACATAGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTGGTTTCCTCTCCATACCGTTTTCTCCAGGGAACATAGTCTCA  550

seq1  ACTATCCCTTATCCTGAATTCTTGTCTTAAGTTGGATATTTTTGAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCCTTATCCTGAATTCTTGTCTTAAGTTGGATATTTTTGAAAAGG  600

seq1  TCTCACTTTCAAGCAAGGTCATTCCCAAGGTAATTTGTGTTTGGA-TTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTCACTTTCAAGCAAGGTCATTCCCAAGGTAATTTGTGTTTGGATTTTT  650

seq1  AAAAAAATCCGTTTTTGGAGATACAGCTCTGCCCAAAACAGTAAGCCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCCGTTTTTGGAGATACAGCTCTGCCCAAAACAGTAAGCCAAG  700

seq1  ATATGTCAGGGTGAAGTACAATA-TTAGATTTGGAGACCTCAAAGATAGC  748
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATATGTCAGGGTGAAGTACAATATTTAGATTTGGAGACCTCAAAGATAGC  750

seq1  AGCATCACCCAGCCACAAAACAGATCATAGACACTTAGCATGTTCACTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACCCAGCCACAAAACAGATCATAGACACTTAGCATGTTCACTAG  800

seq1  CCCCTCTTTCCTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTTCCTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  850