BAC Information

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BAC

Clone NameB6Ng01-135N11
Chromosome4 (Build37)
Map Location 63,396,033 - 63,570,229
singlet/doubletdoublet
Overlap geneTnfsf15, Tnfsf8, Rpl17-ps
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451
Downstream geneTnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135N11.bB6Ng01-135N11.g
ACCDH935779DH935780
length1,043914
definitionDH935779|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N11, 5' end.DH935780|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,396,033 - 63,397,071)(63,569,303 - 63,570,229)
sequence
gaattcttccaccatcacaaccctctgttcctgagtcacttcagatttca
catgatagaagaaaagcaactgccttggtatcagatagacatgaatttgg
attgtggttctgtcctttgtcaatggtaagatcttgagaaagacaccctt
ttctctgagtttagtgtacctactggagatgctaacacccccaaacctaa
gtgacttgcagagttgaggtaaagatcaattaagaaaatggcccagttag
ttggaaggacatgtgaaaatacaagaactaccattcacaggcttgagcac
gagacgcaggagcaaggcaggcttccaacttacaatcatacaatcttttc
acacacttgcatgccttggcaagagaattctctgacttggatcttgtaat
tacacagcctcactaacagattatttcttactaccatggacatctcatct
ctgtctacaacttaaaatctacatgggcacagcacacacacgtgtgtgta
tgtgtgtgtgtgtctgtgtgtgcttgtgactgaggggttgtaactgagtg
caaaagagaaggcttcaacccaggagagtgtgcaccaagatgtccaggcc
ctgcctcctgctctctgggtcttcctacagctgcttagcagacctttatg
cctttggtttcttccttttgtctattttacagcttttctctagagggcta
actagagaggattctatgatgatcaaagattctattgtggtcataatgct
ttggtggcactgcaggcctttcacacttatagttttcatatattttttaa
aaatttatttatttattatatatgtatatgcacagttgcatgtgtggagg
tctaaggacaacgtgtgctaggtctgctttttactttcaccacaaaggtt
cctaaggaagcaccttttacccactgagcccgcccactgaccccacgaat
ctatcttatcctgacatcctattggtcacctctttgtaccaactgtttgc
tcttttctatgtctcttgtgtttccaagtctgggaagaggaaa
gaattccagacatgcttgatgtacttagcaaatttgtattgaaagtgatt
gcctatgaagaaactgccaagcctctagaagatgtaaccttccagagttt
gttccaccataagcatctgcaatggactcacatcaaattagaatagccag
ggactgatcttaaaagttggtaagatttgcttcactgctgaaaaaattct
gggacagagaaattagcatgaaaaacatgttctgggggagatccgaatat
gagtatttccagagaggagggactcaagcctgagcaacagaagagattgg
gctactttgcatgctcacccatacccaattgggctctaaccctgggctaa
tgtttcagagaggtttaaatatattgcatgagtgaccaggctttcagatt
cttattttagccattggcaatgggtgcactctgacactgagagaaagtgt
gacaattttctaaaattttgaggaattactattcttagtcatgaaaagac
agtggacagcatttaaatataaagtatgtgggtgcactctttcagaatgc
tgggatggaagaactgccctttaccataccggaggttctcttgaagtctc
agttttcactcatgtctcattctgtgccctccagattctcctcattataa
gctagaatttctactagacttggtggctaatctgacagtatgaaccagct
tcttgtttctgtagtctacattagagtatacattctagaaaatcacacaa
tccttaccacaatgcctaagctatgtcccaatagccattttataactttt
ctttggatgaaatagagtgtatggccaagaaaattcccatgactattcta
ctggaataaggtcctagtctgaaatacattttggatccatcccagtaagg
cagttcagtgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63396033_63397071
seq2: B6Ng01-135N11.b_47_1089

seq1  GAATTCTTCCACCATCACAACCCTCTGTTCCTGAGTCACTTCAGATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACCATCACAACCCTCTGTTCCTGAGTCACTTCAGATTTCA  50

seq1  CATGATAGAAGAAAAGCAACTGCCTTGGTATCAGATAGACATGAATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGAAGAAAAGCAACTGCCTTGGTATCAGATAGACATGAATTTGG  100

seq1  ATTGTGGTTCTGTCCTTTGTCAATGGTAAGATCTTGAGAAAGACACCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTTCTGTCCTTTGTCAATGGTAAGATCTTGAGAAAGACACCCTT  150

seq1  TTCTCTGAGTTTAGTGTACCTACTGGAGATGCTAACACCCCCAAACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGTTTAGTGTACCTACTGGAGATGCTAACACCCCCAAACCTAA  200

seq1  GTGACTTGCAGAGTTGAGGTAAAGATCAATTAAGAAAATGGCCCAGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTGCAGAGTTGAGGTAAAGATCAATTAAGAAAATGGCCCAGTTAG  250

seq1  TTGGAAGGACATGTGAAAATACAAGAACTACCATTCACAGGCTTGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGACATGTGAAAATACAAGAACTACCATTCACAGGCTTGAGCAC  300

seq1  GAGACGCAGGAGCAAGGCAGGCTTCCAACTTACAATCATACAATCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGCAGGAGCAAGGCAGGCTTCCAACTTACAATCATACAATCTTTTC  350

seq1  ACACACTTGCATGCCTTGGCAAGAGAATTCTCTGACTTGGATCTTGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTGCATGCCTTGGCAAGAGAATTCTCTGACTTGGATCTTGTAAT  400

seq1  TACACAGCCTCACTAACAGATTATTTCTTACTACCATGGACATCTCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCCTCACTAACAGATTATTTCTTACTACCATGGACATCTCATCT  450

seq1  CTGTCTACAACTTAAAATCTACATGGGCACAGCACACACACGTGTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACAACTTAAAATCTACATGGGCACAGCACACACACGTGTGTGTA  500

seq1  TGTGTGTGTGTGTCTGTGTGTGCTTGTGACTGAGGGGTTGTAACTGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTCTGTGTGTGCTTGTGACTGAGGGGTTGTAACTGAGTG  550

seq1  CAAAAGAGAAGGCTTCAACCCAGGAGAGTGTGCACCAAGATGTCCAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGAAGGCTTCAACCCAGGAGAGTGTGCACCAAGATGTCCAGGCC  600

seq1  CTGCCTCCTGCTCTCTGGGTCTTCCTACAGCTGCTTAGCAGACCTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTGCTCTCTGGGTCTTCCTACAGCTGCTTAGCAGACCTTTATG  650

seq1  CCTTTGGTTTCTTCCTTTTGTCTATTTTACAGCTTTTCTCTAGAGGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTTTCTTCCTTTTGTCTATTTTACAGCTTTTCTCTAGAGGGCTA  700

seq1  ACTAGAGAGGATTCTATGATGATC-AAGATTCTATTGTGGTCATAATGCT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTAGAGAGGATTCTATGATGATCAAAGATTCTATTGTGGTCATAATGCT  750

seq1  TTGGTGGCACTGCAGGCCTTTCACAC-TATAG-TTTCATATATTTTTTTA  797
      |||||||||||||||||||||||||| ||||| ||||||||| |||||||
seq2  TTGGTGGCACTGCAGGCCTTTCACACTTATAGTTTTCATATA-TTTTTTA  799

seq1  AAAATTTATTTTATTTATTATATATGTATATGCACAG-TGCATGTGTGGA  846
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AAAATTTA-TTTATTTATTATATATGTATATGCACAGTTGCATGTGTGGA  848

seq1  GGTCTAAGGACAACGTGTGCTAGGTCTGCTTTTTACTTTCACCAC-AAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTCTAAGGACAACGTGTGCTAGGTCTGCTTTTTACTTTCACCACAAAGG  898

seq1  GTCCTAAGGCAAGCACC-TTTACCCACTGAGCCCGCCCACTGA-CCCACA  943
       |||||||| ||||||| ||||||||||||||||||||||||| ||||| 
seq2  TTCCTAAGG-AAGCACCTTTTACCCACTGAGCCCGCCCACTGACCCCACG  947

seq1  GATCTATCTTATCCTGACATCCTATTGGTCACCTCTTTTGTTACCAACTG  993
       |||||||||||||||||||||||||||||||||||||   |||||||||
seq2  AATCTATCTTATCCTGACATCCTATTGGTCACCTCTTT--GTACCAACTG  995

seq1  TTTGCTCTTTTCTATGTCCTCTTGTGTTTCCAGCTGTG---AGAGGAAA  1039
      ||||||||||||||||| ||||||||||||||  | ||   ||||||||
seq2  TTTGCTCTTTTCTATGT-CTCTTGTGTTTCCAAGTCTGGGAAGAGGAAA  1043

seq1: chr4_63569303_63570229
seq2: B6Ng01-135N11.g_70_983 (reverse)

seq1  TTATCACCTGGACACTGCCTTACTGGGATTGGATCCCATATAGTATTTTC  50
      |||||| |||   ||||||||||||||| ||||||| | || ||| ||||
seq2  TTATCA-CTG--AACTGCCTTACTGGGA-TGGATCCAAAAT-GTA-TTTC  44

seq1  AGACTAGGGGACCCTTACTACAGTAGAATAGTCATGGGAAATTCTCTTGT  100
      ||||||||    ||||| | |||||||||||||||||| |||| ||||| 
seq2  AGACTAGG---ACCTTATTCCAGTAGAATAGTCATGGG-AATTTTCTTG-  89

seq1  GCCATTACACTCTATGTCATCCAAAG-AAAGTTATAAAATGGCTATTGGG  149
      |||| |||||||||| |||||||||| |||||||||||||||||||| ||
seq2  GCCA-TACACTCTATTTCATCCAAAGAAAAGTTATAAAATGGCTATT-GG  137

seq1  GACATAGCTTAGGCATTGGTGGTAAGGATTGTGTGATTTTTCTAGAATGT  199
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  GACATAGCTTAGGCATT-GTGGTAAGGATTGTGTGA-TTTTCTAGAATGT  185

seq1  ATACTCTAATGTAGACTACAGAAACAAGAAGCTGGTTCATACTGTCAGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTAATGTAGACTACAGAAACAAGAAGCTGGTTCATACTGTCAGAT  235

seq1  TAGCCACCAAGTCTAGTAGAAATTCTAGCTTATAATGAGGAGAATCTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCAAGTCTAGTAGAAATTCTAGCTTATAATGAGGAGAATCTGGA  285

seq1  GGGCACAGAATGAGACATGAGTGAAAACTGAGACTTCAAGAGAACCTCCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGAATGAGACATGAGTGAAAACTGAGACTTCAAGAGAACCTCCG  335

seq1  GTATGGT-AAGGGCAGTTCTTCCATCCCAGCATTCTGAAAGAGTGCACCC  398
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTAAAGGGCAGTTCTTCCATCCCAGCATTCTGAAAGAGTGCACCC  385

seq1  ACATACTTTATATTTAAATGCTGTCCACTGTCTTTTCATGACTAAGAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTTATATTTAAATGCTGTCCACTGTCTTTTCATGACTAAGAATA  435

seq1  GTAATTCCTCAAAATTTTAGAAAATTGTCACACTTTCTCTCAGTGTCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCCTCAAAATTTTAGAAAATTGTCACACTTTCTCTCAGTGTCAGA  485

seq1  GTGCACCCATTGCCAATGGCTAAAATAAGAATCTGAAAGCCTGGTCACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCATTGCCAATGGCTAAAATAAGAATCTGAAAGCCTGGTCACTC  535

seq1  ATGCAATATATTTAAACCTCTCTGAAACATTAGCCCAGGGTTAGAGCCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATATATTTAAACCTCTCTGAAACATTAGCCCAGGGTTAGAGCCCA  585

seq1  ATTGGGTATGGGTGAGCATGCAAAGTAGCCCAATCTCTTCTGTTGCTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTATGGGTGAGCATGCAAAGTAGCCCAATCTCTTCTGTTGCTCAG  635

seq1  GCTTGAGTCCCTCCTCTCTGGAAATACTCATATTCGGATCTCCCCCAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTCCCTCCTCTCTGGAAATACTCATATTCGGATCTCCCCCAGAA  685

seq1  CATGTTTTTCATGCTAATTTCTCTGTCCCAGAATTTTTTCAGCAGTGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTCATGCTAATTTCTCTGTCCCAGAATTTTTTCAGCAGTGAAG  735

seq1  CAAATCTTACCAACTTTTAAGATCAGTCCCTGGCTATTCTAATTTGATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTACCAACTTTTAAGATCAGTCCCTGGCTATTCTAATTTGATGT  785

seq1  GAGTCCATTGCAGATGCTTATGGTGGAACAAACTCTGGAAGGTTACATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATTGCAGATGCTTATGGTGGAACAAACTCTGGAAGGTTACATCT  835

seq1  TCTAGAGGCTTGGCAGTTTCTTCATAGGCAATCACTTTCAATACAAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCTTGGCAGTTTCTTCATAGGCAATCACTTTCAATACAAATTT  885

seq1  GCTAAGTACATCAAGCATGTCTGGAATTC  927
      |||||||||||||||||||||||||||||
seq2  GCTAAGTACATCAAGCATGTCTGGAATTC  914