BAC Information

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BAC

Clone NameB6Ng01-135N12
Chromosome4 (Build37)
Map Location 144,450,869 - 144,451,964
singlet/doubletsinglet
Overlap geneLOC676844
Upstream geneLOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242
Downstream geneDhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135N12.bB6Ng01-135N12.g
ACCDH935781DH935782
length1,0921,195
definitionDH935781|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N12, 5' end.DH935782|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagtgtatgtaagctgttattgattgctgattaaacttacatg
ccatttgtgatatcttgccataccccttcccagtagttgtgttctgtcac
agggggctagacatctgttctgggttaggtaatggccgagagtttacaag
ttcatttctgcaacattcaccttatggtttcaattatatttttagtgttc
ttggtgtttttgtcaatcattctgtttctataacagcacaaagatttgtt
ggatcagtgtggataatgaggttatagctgtgctgctaattggttgattg
ctggaaagtatttaggctaaatctgaaattgaactagtcctccataattt
cctgaatttttttctttctgtatgtttagtgaagatgtggagaaagtgga
acactcctaaatttgccattacatatgttgcaaaatttggagggttgttt
tggtggtggctcaggaaaattacatcgaagtatataatgtgctttaaata
ctgaaccaatagacactaattttgctgtgacaaaatcatccttttaaaat
ttaatgtgggtatggattggtgcaggtttatatattatgcccctccatag
aaaactgttacagcacttcatataatcttattaagtcaatagcattatat
gaagttatgagtttataatgttttagagaaggtaatgggagccctttggt
ccacagagatttcagattggctgttctcatgtggtgtgtggcattccagc
atctccagtgtatttgacagtgtcctggttatgcccagctaacagtgaaa
gcttggaagctgaaggtgactaggatgctgactcttgtgttctgtaaggt
taggcaatgttgaatggagttttacatgagcatagtagctcatgtcccat
aatactgttaagaatcccattaaaatattatttgaaagttcaggaaaaat
acacagaactggaaaatatgttgagcaaagtcacctagacacagaaagac
aacctgcatgctatgtctcatgtgtggatctaagctttaacttttatata
tgtgtgtatgagacagtgtatattgtatggatgctgaaaatt
gaattcaaggcccattcctaaacatagtaatagcaatacacagcaaacca
gtagccaacatcaaaataaatggagagaaacttgaaacaatcccactaaa
atcaggagctagacagggctgcccacactctccctatctattcaatgtag
tacttgaaattctagctagagcaattggacaccaaaaggaggtcaaagaa
atacagattggaaaggaagaagtcaaaacattactatttgcagaagatgt
gatagtatattttagagacccctaaaattccatcagagaactcctacagc
tgataaaaccttcagcaaaatggcgagatgtaaaactaactcaaataaat
cagtagtcttcctttataaaaagaaaaacaggctgacaaaaaaattaggg
aaatgacacctataatataaaataccttggtgtgactctaactaaacaaa
tgaaagatctttacaacaagaacttcaactttctaaggaaagaaattaaa
gaagatctcagaagatggaaagatctcccatgctcatggattggcaggat
caatatagtaaaaattgctatcttgccaaaagcaatctacagattcaatg
cactccccatcaaaattccaaatcaattcttcaacgaattagaaagggca
atctgcaaattcatcttgaataacaaaaaacctaggatagcaaaaactct
gctcaaggataaaaaaaaaaacatttgggggaatcaccatgcctgacata
aagctgtactacagagcaattgtgataaaaaaaaaaaactgcatggtact
ggtatagcgacacacaagtagacaaacggaatagaattgaagacccagaa
atcaacccacacacttatgggcacttgatctttgacaacggagcaaaatc
atccagtggaaaaaagacagcattttcaacaaatggtgctggcacactgg
tgtatcatgtacaaatgcgaatgatcattctatctccttgtactaaggtc
aatctaggtgatacgactcacataaaccgaagaacctgaaacttataggg
atagtaggaaaggctcgagaatgtgggccaggcaaatttcgaatagaaag
catgctggcctgtagatcgatcacgattggaccttaattgcaagctctca
agcagacagttcacaagacataatgcaccaattggtgagaggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144450869_144451964
seq2: B6Ng01-135N12.b_49_1140 (reverse)

seq1  AATTTTCTGGCATCCAT-CCATATTCCCTGTCTCATAAACACACATATAT  49
      |||||||  |||||||| | |||| | |||||||||  ||||||||||||
seq2  AATTTTC-AGCATCCATACAATATACACTGTCTCAT--ACACACATATAT  47

seq1  AAAAGTTAAAGGCTAGATCCACACATGAGACATAGCATGCAGTGTTTGTC  99
      |||||||||||  ||||||||||||||||||||||||||||  | |||||
seq2  AAAAGTTAAAGCTTAGATCCACACATGAGACATAGCATGCA--GGTTGTC  95

seq1  TTTCTGTGTCTAGGTGACCTTGCTCAACATATTTTCCAGTTCTGTGTATT  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTCTGTGTCTAGGTGACTTTGCTCAACATATTTTCCAGTTCTGTGTATT  145

seq1  TTTCCTGAAACTTTCAAATTAATATTTTTAATGGGA-TCTTACCAGTA-T  197
      ||||||| |||||||||| ||||| ||||||||||| ||||| ||||| |
seq2  TTTCCTG-AACTTTCAAA-TAATA-TTTTAATGGGATTCTTAACAGTATT  192

seq1  ATGGGACATGAGCTACTATGCTCATGTAAAACTCCATTCAACATTGCCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACATGAGCTACTATGCTCATGTAAAACTCCATTCAACATTGCCTA  242

seq1  ACCTTACAGAACAC-AGAGTCAGCATCCTAGTCACCTTCAGCTTCCAAGC  296
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCTTACAGAACACAAGAGTCAGCATCCTAGTCACCTTCAGCTTCCAAGC  292

seq1  TTTCACTGTTAGCTGGGCATAACCAGGACACTGTCAAATACACTGGAGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGTTAGCTGGGCATAACCAGGACACTGTCAAATACACTGGAGAT  342

seq1  GCTGGAATGCCACACACCACATGAGAACAGCCAATCTGAAATCTCTGTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATGCCACACACCACATGAGAACAGCCAATCTGAAATCTCTGTGG  392

seq1  ACCAAAGGGCTCCCATTACCTTCTCTAAAACATTATAAACTCATAACTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGGCTCCCATTACCTTCTCTAAAACATTATAAACTCATAACTTC  442

seq1  ATATAATGCTATTGACTTAATAAGATTATATGAAGTGCTGTAACAGTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGCTATTGACTTAATAAGATTATATGAAGTGCTGTAACAGTTTT  492

seq1  CTATGGAGGGGCATAATATATAAACCTGCACCAATCCATACCCACATTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGGGGCATAATATATAAACCTGCACCAATCCATACCCACATTAA  542

seq1  ATTTTAAAAGGATGATTTTGTCACAGCAAAATTAGTGTCTATTGGTTCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGGATGATTTTGTCACAGCAAAATTAGTGTCTATTGGTTCAG  592

seq1  TATTTAAAGCACATTATATACTTCGATGTAATTTTCCTGAGCCACCACCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGCACATTATATACTTCGATGTAATTTTCCTGAGCCACCACCA  642

seq1  AAACAACCCTCCAAATTTTGCAACATATGTAATGGCAAATTTAGGAGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCTCCAAATTTTGCAACATATGTAATGGCAAATTTAGGAGTGT  692

seq1  TCCACTTTCTCCACATCTTCACTAAACATACAGAAAGAAAAAAATTCAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTCTCCACATCTTCACTAAACATACAGAAAGAAAAAAATTCAGG  742

seq1  AAATTATGGAGGACTAGTTCAATTTCAGATTTAGCCTAAATACTTTCCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGGAGGACTAGTTCAATTTCAGATTTAGCCTAAATACTTTCCAG  792

seq1  CAATCAACCAATTAGCAGCACAGCTATAACCTCATTATCCACACTGATCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAACCAATTAGCAGCACAGCTATAACCTCATTATCCACACTGATCC  842

seq1  AACAAATCTTTGTGCTGTTATAGAAACAGAATGATTGACAAAAACACCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTTTGTGCTGTTATAGAAACAGAATGATTGACAAAAACACCAA  892

seq1  GAACACTAAAAATATAATTGAAACCATAAGGTGAATGTTGCAGAAATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTAAAAATATAATTGAAACCATAAGGTGAATGTTGCAGAAATGAA  942

seq1  CTTGTAAACTCTCGGCCATTACCTAACCCAGAACAGATGTCTAGCCCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAACTCTCGGCCATTACCTAACCCAGAACAGATGTCTAGCCCCCT  992

seq1  GTGACAGAACACAACTACTGGGAAGGGGTATGGCAAGATATCACAAATGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAACACAACTACTGGGAAGGGGTATGGCAAGATATCACAAATGG  1042

seq1  CATGTAAGTTTAATCAGCAATCAATAACAGCTTACATACACTGTGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGTTTAATCAGCAATCAATAACAGCTTACATACACTGTGAATTC  1092