BAC Information

Click to search

BAC

Clone NameB6Ng01-136C18
Chromosome4 (Build37)
Map Location 89,321,330 - 89,322,478
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
Downstream geneDmrta1, Zfp352, LOC619842, LOC435792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136C18.bB6Ng01-136C18.g
ACCDH936017DH936018
length1,2411,137
definitionDH936017|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C18, 5' end.DH936018|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagctttggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
cttaagaaattaaagaagatctcagaacatggaaagatctcccatgctca
tggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaat
ctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacg
aattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaag
atagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccat
gccagacctaaagctttactacagagcaattgtgataaaaactgcatggt
actggtatagagacagacaagtagaccaatggaatagaattgaagaccca
gaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaa
aaccatccagtggaagaaagacagcagtttcaacaattggtgctggcaca
actgggttgttatcgtgtagaagatgcgaatcgatccatactatctcctt
gtactaaggtcaaatctagtgatcaaggaacttcacataaacagagacac
tgaaactatagaggagaagtgggaaaaggctgaagaatgggcacagggga
aaatcctgaacgaacagcattgctgtgcctgtaagatcgagatggaattg
gactaatgaaactcaagttctgcaggcagatcgtcaaaaccaaagactca
tcagattggaaggatgtaacctactcctgaatcacgaaatg
gaattcatggtgttttcttaaggaggcttgctgctttgatacacatttta
tgtagaacacaggaacactaaaaagaatttttacatcatttaaaaatgta
taatttgcttatatattcatgtaagttcatttactaaaataaaatgctgt
ttaacaaagcagttctactttttctttatctactttaaagagggaagatg
cacacactcttctgattgtctgttctttagatagttcagcccaaagttta
tccatgggaaagtgatctctttagactgactgtccttggcctaaatacca
gttcccaggagtggtagggaatattgaaaaacaaattctacaggctctgg
gccagctggaaaacttggtacagagaaacacaacccaaaacaggatttcc
gaaggtagcatgtagcagtgaattgaagcagaactcctggaccatatgaa
gtcaaaagtcagagtcctagtatcctaagaactcaaatatagagcaggta
ctatttctggttggatcttagctatgatctttcttcacaagatcctggtg
tggtcagaagttcccatagttccctccttcaggtcaagtaacaatgtaat
aagtgttttgtttaggctacagataatcctcaggcagggcttctcagagt
gtgctttcccacactacttgttctgccctatctgaaaggctgcaacaatt
gtagcagctatcaggctcatcctgtaactgcttgctcatgaaccttgggg
ctgtgttcaacaatcaatacctggggtaaagcctaaccatgtgattatta
tacttgctaaaattgaacagtccctgttctaatgcagttagcacctatag
gcttttgagaattcatctctatgcaatctgaccacacttagttatttgaa
atcacctactgttctgtacatttaagcactatgtattttaagtgagtgct
cagattatttcttccctggaagacttaccctctaactccctggacagctt
ttttagctgacccttcctacagaaacacactgagtgaagtatgtctatga
actcagtataccctactatcgctaagaggacagctagattaggtacctaa
tgaaaaagggcttgattgtttatctgggaatttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_89321330_89322478
seq2: B6Ng01-136C18.g_65_1201

seq1  GAATTCATGGTGTTTTCTTAAGGAGGCTTGCTGCTTTGATACACATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTGTTTTCTTAAGGAGGCTTGCTGCTTTGATACACATTTTA  50

seq1  TGTAGAACACAGGAACACTAAAAAGAATTTTTACATCATTTAAAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACACAGGAACACTAAAAAGAATTTTTACATCATTTAAAAATGTA  100

seq1  TAATTTGCTTATATATTCATGTAAGTTCATTTACTAAAATAAAATGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTTATATATTCATGTAAGTTCATTTACTAAAATAAAATGCTGT  150

seq1  TTAACAAAGCAGTTCTACTTTTTCTTTATCTACTTTAAAGAGGGAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAGCAGTTCTACTTTTTCTTTATCTACTTTAAAGAGGGAAGATG  200

seq1  CACACACTCTTCTGATTGTCTGTTCTTTAGATAGTTCAGCCCAAAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCTTCTGATTGTCTGTTCTTTAGATAGTTCAGCCCAAAGTTTA  250

seq1  TCCATGGGAAAGTGATCTCTTTAGACTGACTGTCCTTGGCCTAAATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGAAAGTGATCTCTTTAGACTGACTGTCCTTGGCCTAAATACCA  300

seq1  GTTCCCAGGAGTGGTAGGGAATATTGAAAAACAAATTCTACAGGCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGGAGTGGTAGGGAATATTGAAAAACAAATTCTACAGGCTCTGG  350

seq1  GCCAGCTGGAAAACTTGGTACAGAGAAACACAACCCAAAACAGGATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGGAAAACTTGGTACAGAGAAACACAACCCAAAACAGGATTTCC  400

seq1  GAAGGTAGCATGTAGCAGTGAATTGAAGCAGAACTCCTGGACCATATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAGCATGTAGCAGTGAATTGAAGCAGAACTCCTGGACCATATGAA  450

seq1  GTCAAAAGTCAGAGTCCTAGTATCCTAAGAACTCAAATATAGAGCAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGTCAGAGTCCTAGTATCCTAAGAACTCAAATATAGAGCAGGTA  500

seq1  CTATTTCTGGTTGGATCTTAGCTATGATCTTTCTTCACAAGATCCTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGGTTGGATCTTAGCTATGATCTTTCTTCACAAGATCCTGGTG  550

seq1  TGGTCAGAAGTTCCCATAGTTCCCTCCTTCAGGTCAAGTAACAATGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAAGTTCCCATAGTTCCCTCCTTCAGGTCAAGTAACAATGTAAT  600

seq1  AAGTGTTTTGTTTAGGCTACAGATAATCCTCAGGCAGGGCTTCTCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTTGTTTAGGCTACAGATAATCCTCAGGCAGGGCTTCTCAGAGT  650

seq1  GTGCTTTCCCACACTACTTGTTCTGCCCTATCTGAAAGGCTGCAACAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCCCACACTACTTGTTCTGCCCTATCTGAAAGGCTGCAACAATT  700

seq1  GTAGCAGCTATCAGGCTCATCCTGTAACTGCTTGCTCATGAACCTTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGCTATCAGGCTCATCCTGTAACTGCTTGCTCATGAACCTTGGGG  750

seq1  CTGTGTTCAACAATCAATACCTGGGGTAAAGCCTAACCATGTGATTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCAACAATCAATACCTGGGGTAAAGCCTAACCATGTGATTATTA  800

seq1  TACTTGCTAAAATTGAACAGTCCCTGTTCTAATGCAGTTAGCACCTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTAAAATTGAACAGTCCCTGTTCTAATGCAGTTAGCACCTATAG  850

seq1  GCTTTTGAGAATTCATCTCTATGCAATCTGACCACACTTAGTTATTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAGAATTCATCTCTATGCAATCTGACCACACTTAGTTATTTGAA  900

seq1  ATCACCTACTGTTCTGTACATTTAAGCACTATGTATTTTAAGTGAGTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTACTGTTCTGTACATTTAAGCACTATGTATTTTAAGTGAGTGCT  950

seq1  CAGATTATTTCTTCCCTGGAAGACTTACCCTCTAACTCCCTGGACAGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTTCTTCCCTGGAAGACTTACCCTCTAACTCCCTGGACAGCTT  1000

seq1  TTTTAGCTGACCCTTCCTACAGAAACCACAACTGAAGTGAAGTAAGGTTC  1050
      ||||||||||||||||||||||||| ||| |||| ||||||||| |  ||
seq2  TTTTAGCTGACCCTTCCTACAGAAA-CAC-ACTG-AGTGAAGTATG--TC  1045

seq1  TATGAACTCAGTATACCCTACTTATCGCTAAAAGAGACAAGCTAGATTTA  1100
      ||||||||||||||||||||| ||||||||| || ||| ||||||| |||
seq2  TATGAACTCAGTATACCCTAC-TATCGCTAAGAG-GAC-AGCTAGA-TTA  1091

seq1  GGTAACCTACATGAAAAAGGAGCTTGATTGTCTATCTGGAATTTTCAGA  1149
      ||| ||||| |||||||||| |||||||||| ||||||| | |||||||
seq2  GGT-ACCTA-ATGAAAAAGG-GCTTGATTGTTTATCTGGGAATTTCAGA  1137