BAC Information

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BAC

Clone NameB6Ng01-136L02
Chromosome4 (Build37)
Map Location 61,098,824 - 61,100,126
singlet/doubletsinglet
Overlap geneLOC100039150
Upstream geneLOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242
Downstream geneLOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L02.bB6Ng01-136L02.g
ACCDH936400DH936401
length9721,150
definitionDH936400|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L02, 5' end.DH936401|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttagttcttaaattccatactgtgtaagtgagatgctcttagc
tgagaaagaggaaatgaaacctggtatggtctcacgcctacaaacactcg
ggactgggggaagagatgcctctcagtatgtacatttgtacacacatact
aagtctgtatcctaaaccagaacgctccatctgacactgaaccaagatct
cataaccagggatttttcaaaagtcagagacaagagttggtgacaggaat
taattcactaggagttccttaaggaaaggtcagagacacttctgaaacca
cattattgagccagtttatcacaagttaagattatgtgatcatgaatcaa
atttttctttctagttgttagccaaataaatccacccctttgtacttccg
ttttcctgcagtaaaggcgataataataattctcctctgtggtactggga
accacatcaggcaacattacagagtgctaatttgaggcagatggtggaaa
tctggctgataatctacaccgctggctgaagcccggcactggtgaaactt
ggaagtagttgcagttgtaataaggatgagaagtgattgttgttttcttt
ttttttaaatactaggcaaatttgtgattgctaaagcatgaaatataaag
gaattaatgtaaataaacgccttttgctaattttacaaaaacagtcaaaa
gttaaatggaatcagaaactggagataggtacagagtacagggtccagaa
tccatccagatcaaaatcccttacgaaccagctcactctgttttacagaa
gagatgaagagtgctcggaattatctatggttgctgacaaaacagaaaag
gctggtgaatattctgtgacgtgtgagtatataaaatctatatatctatc
cacaagatgattagtaaaccttaatacctttagtgtgtgtgtttgtgtgt
gtgtgtgttgtttttggtggtg
gaattcattttggtgcagacatgcccctgccgccctgattagctgaagct
gcatgcctggtgaggtgacatggcctgccatgagtggatgagggctgaga
gtatataagagtgagaggctcgggtcagagagagagaaagaaggaagaaa
gaaaaagatgagagagaaagttgaagcgagagagattaagactgaagttt
gctgaataaagtggtattagaaggactggtggtcgtgttgttcttgctga
tcgagagcagatgctacaattggtggctcgtacgggaaatcgactcctcc
accaacgagttcagaacttttagcagtcagtgtttgccggcagggtaagt
tcacggtaagtgaaacttaagaccccaggagttttggaaggacctcggat
aaaaatagaggtaaaaataaagttgccaggaagcaagcacaaagtaacga
taaggttcccggttttgggacaagttaaggttcccggttttgggacaagt
taaggttctcggctttgggataagttaaggttcctggctttgggacaagt
taaggttcccggctttggaacaagttaaggttcacgggtttggaacaagt
tgcaccaagcaccattgggaattgaggtttgcagaggatcagagggtttt
accaaaaggggctttgccggtctgtaagttagtgagaaattgcatagaag
atagaaaaagatgtggcgcagaactccagagaggtaatgaggtgctgaat
cagtgagagaggagcgctctcaattggtttgggagagtgggtctgtttgt
gtttccccaggatcactgaaaaccgctgtgggtcccagaacgggctgatc
agagcaattcagggcaagcagaacgatgaggacgtggatgtttctgtggc
tgagaatgctcctgctagtgagaactgaagagctaagttgggaattatgt
cttgttgttcctgaggcccatgccattgacgcattcagtgttttctcaat
tcttacatctaatgctcgctactacattgccttttttctatgctgcttta
gctaaagggaatggttgcgtttcagatgattaaagtttcacagatgagtg
attgtgttccagctggtatctactatagctaaggctacctgtgggatcgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61098824_61100126
seq2: B6Ng01-136L02.b_49_1020 (reverse)

seq1  CACCACTAGTAAACAGTCAGCCACAGCAGCACCACTCTCTGATCATCTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGCTTACCTCCCTCCCTCAGCAGCTTCAAGCAACATGTTTCTATCTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TATAAGTTTGTTGTATCAAACATCCACTGCTACACCCTAAGCGATTAACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGTGCTAGCCTCCAGGCAGTATCAGATAGATTCCATCTCTCCCTACTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCTACTTTCCTGCCACAGGGTGTTAGTTATAAGATGGCACCAATTTTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTAGTAGGTGCAAGTTCCTGAGTTCAAACTGCAGCAAAACTCACACAACA  300
                                                        
seq2  --------------------------------------------------  0

seq1  ATAACAACAACAACAACAACAACAACAACAACAACAACAAAAACAACACA  350
                                     || || |||||||||||||
seq2  -------------------------------CACCACCAAAAACAACACA  19

seq1  CACACACACAAACACACACACTAAAGGTATTAAGGTTTACTAATCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAAACACACACACTAAAGGTATTAAGGTTTACTAATCATCTT  69

seq1  GTGGATAGATATATAGATTTTATATACTCACACGTCACAGAATATTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGATATATAGATTTTATATACTCACACGTCACAGAATATTCACC  119

seq1  AGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCCGAGCACTCTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCCGAGCACTCTTCAT  169

seq1  CTCTTCTGTAAAACAGAGTGAGCTGGTTCGTAAGGGATTTTGATCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTAAAACAGAGTGAGCTGGTTCGTAAGGGATTTTGATCTGGAT  219

seq1  GGATTCTGGACCCTGTACTCTGTACCTATCTCCAGTTTCTGATTCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGGACCCTGTACTCTGTACCTATCTCCAGTTTCTGATTCCATTT  269

seq1  AACTTTTGACTGTTTTTGTAAAATTAGCAAAAGGCGTTTATTTACATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGACTGTTTTTGTAAAATTAGCAAAAGGCGTTTATTTACATTAA  319

seq1  TTCCTTTATATTTCATGCTTTAGCAATCACAAATTTGCCTAGTATTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATATTTCATGCTTTAGCAATCACAAATTTGCCTAGTATTTAAA  369

seq1  AAAAAAGAAAACAACAATCACTTCTCATCCTTATTACAACTGCAACTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAACAACAATCACTTCTCATCCTTATTACAACTGCAACTACT  419

seq1  TCCAAGTTTCACCAGTGCCGGGCTTCAGCCAGCGGTGTAGATTATCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTTCACCAGTGCCGGGCTTCAGCCAGCGGTGTAGATTATCAGCC  469

seq1  AGATTTCCACCATCTGCCTCAAATTAGCACTCTGTAATGTTGCCTGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCACCATCTGCCTCAAATTAGCACTCTGTAATGTTGCCTGATGT  519

seq1  GGTTCCCAGTACCACAGAGGAGAATTATTATTATCGCCTTTACTGCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGTACCACAGAGGAGAATTATTATTATCGCCTTTACTGCAGGA  569

seq1  AAACGGAAGTACAAAGGGGTGGATTTATTTGGCTAACAACTAGAAAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGAAGTACAAAGGGGTGGATTTATTTGGCTAACAACTAGAAAGAAA  619

seq1  AATTTGATTCATGATCACATAATCTTAACTTGTGATAAACTGGCTCAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTCATGATCACATAATCTTAACTTGTGATAAACTGGCTCAATA  669

seq1  ATGTGGTTTCAGAAGTGTCTCTGACCTTTCCTTAAGGAACTCCTAGTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTTCAGAAGTGTCTCTGACCTTTCCTTAAGGAACTCCTAGTGAA  719

seq1  TTAATTCCTGTCACCAACTCTTGTCTCTGACTTTTGAAAAATCCCTGGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCTGTCACCAACTCTTGTCTCTGACTTTTGAAAAATCCCTGGTT  769

seq1  ATGAGATCTTGGTTCAGTGTCAGATGGAGCGTTCTGGTTTAGGATACAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCTTGGTTCAGTGTCAGATGGAGCGTTCTGGTTTAGGATACAGA  819

seq1  CTTAGTATGTGTGTACAAATGTACATACTGAGAGGCATCTCTTCCCCCAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATGTGTGTACAAATGTACATACTGAGAGGCATCTCTTCCCCCAG  869

seq1  TCCCGAGTGTTTGTAGGCGTGAGACCATACCAGGTTTCATTTCCTCTTTC  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGTTTGTAGGCGTGAGACCATACCAGGTTTCATTTCCTCTTTC  919

seq1  TCAGCTAAGAGCATCTCACTTACACAGTATGGAATTTAAGAACTAAGGAA  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAAGAGCATCTCACTTACACAGTATGGAATTTAAGAACTAAGGAA  969

seq1  TTC  1303
      |||
seq2  TTC  972