BAC Information

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BAC

Clone NameB6Ng01-136L06
Chromosome4 (Build37)5 (Build37)
Map Location 10,258,726 - 10,259,86718,084,511 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L06.bB6Ng01-136L06.g
ACCDH936406DH936407
length1,185999
definitionDH936406|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L06, 5' end.DH936407|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,258,726 - 10,259,867)(18,084,511 - 18,084,575)
sequence
gaattcaatacttagcactgcaaaaaacaaaattaacaattaatggtaat
tttagataaaagaaaatagagattgccacttttagttctgtaattagaag
caaataataccagctgaaaagtaagtgtatggagaaactagaaacattgg
aaatagcagatgtgtaaataatatacttggggttttttttaatctatttt
tagaaagcattgaattctaaacccaaaataataatagtgcattgtggtgt
gacagaacaatagtaaaggatgacaaaggtcacagggctacatcatttca
ggttatgacaacttagattaggcaggtctacttcgatttaatgtagacta
ttaaatgcactgttcatgtttaatactacctggatgaaacaggcaagtat
tcacataatccaatgagttatccctagatggataataagggaggttaaat
aatactaaaatatgtttggttattctgaaagaaggcaagaaatgaagaat
aagtgagacaaataacaaaatgatggaattaccccaatcttgtgtatact
cattcatatgtactttcacacacatgtatgcacatgcgtgcacgtgcatg
ctccacgcagaaataaataaaaaatcttgagatgggtcatcacggatcag
catggagcataaatccagcaagaggtgttcatataggagaaaagaggggg
aaaccttgtgtggagatggcagttgcaaagcaaagagcaaagaaggagga
gaagcatgagacgaggtctctggcacgtgcacaggcataatgactgcttc
caaatgcttgacattgactacctggtccccagaatctgagcgaatgtgct
gctgttatttttaagatctctcagttatggtgcttcattagaaactactg
tatctggatgctacattgtagggtatttttgtttctatcttaatgaaccc
caaaggctttggttgccagaccgggcattattagaaggctatgaaagctc
gggagatggagcacatggaggagctaggcgactggaggatgttctttcaa
gggtatatcagactctagctctggtccttctgtttttgcaccatgaagtg
aacagctcgcttctgtcgtacactctaccttgaatctgctcttcagggac
aaaattacaaggacttgatcactatggactgagac
gaattctcacctgagaaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgtaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttagtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacgggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
cttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctatttaaaaaatgaatttatgaaattcctagccaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaacgaagaccaaagtgtggacactctaccctttcttagaaatgggaa
caaaacacccatagaaggagttacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgattgccatatgtaggggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagaaagattttgctgaa
aggacccagatatagctctctcttgtgagactatgccggggcctagcaac
agagaagtgggatgatcacagtcagctattggatgggtcacacggcccct
tatggaggagctagaagaattacccaaggagctaaagggaactgcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10258726_10259867
seq2: B6Ng01-136L06.b_100_1229

seq1  ATAAAAGAAAATAGAGATTGCCACTTTTAGTTCTGTAATTAGAAGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAATAGAGATTGCCACTTTTAGTTCTGTAATTAGAAGCAAAT  50

seq1  AATACCAGCTGAAAAGTAAGTGTATGGAGAAACTAGAAACATTGGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGCTGAAAAGTAAGTGTATGGAGAAACTAGAAACATTGGAAATA  100

seq1  GCAGATGTGTAAATAATATACTTGGGGTTTTTTTTAATCTATTTTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTGTAAATAATATACTTGGGGTTTTTTTTAATCTATTTTTAGAA  150

seq1  AGCATTGAATTCTAAACCCAAAATAATAATAGTGCATTGTGGTGTGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGAATTCTAAACCCAAAATAATAATAGTGCATTGTGGTGTGACAG  200

seq1  AACAATAGTAAAGGATGACAAAGGTCACAGGGCTACATCATTTCAGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGTAAAGGATGACAAAGGTCACAGGGCTACATCATTTCAGGTTA  250

seq1  TGACAACTTAGATTAGGCAGGTCTACTTCGATTTAATGTAGACTATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTTAGATTAGGCAGGTCTACTTCGATTTAATGTAGACTATTAAA  300

seq1  TGCACTGTTCATGTTTAATACTACCTGGATGAAACAGGCAAGTATTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTTCATGTTTAATACTACCTGGATGAAACAGGCAAGTATTCACA  350

seq1  TAATCCAATGAGTTATCCCTAGATGGATAATAAGGGAGGTTAAATAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAATGAGTTATCCCTAGATGGATAATAAGGGAGGTTAAATAATAC  400

seq1  TAAAATATGTTTGGTTATTCTGAAAGAAGGCAAGAAATGAAGAATAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGTTTGGTTATTCTGAAAGAAGGCAAGAAATGAAGAATAAGTG  450

seq1  AGACAAATAACAAAATGATGGAATTACCCCAATCTTGTGTATACTCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATAACAAAATGATGGAATTACCCCAATCTTGTGTATACTCATTC  500

seq1  ATATGTACTTTCACACACATGTATGCACATGCGTGCACGTGCATGCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTTTCACACACATGTATGCACATGCGTGCACGTGCATGCTCCA  550

seq1  CGCAGAAATAAATAAAAAATCTTGAGATGGGTCATCACGGATCAGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAAATAAATAAAAAATCTTGAGATGGGTCATCACGGATCAGCATGG  600

seq1  AGCATAAATCCAGCAAGAGGTGTTCATATAGGAGAAAAGAGGGGGAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATCCAGCAAGAGGTGTTCATATAGGAGAAAAGAGGGGGAAACC  650

seq1  TTGTGTGGAGATGGCAGTTGCAAAGCAAAGAGCAAAGAAGGAGGAGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGAGATGGCAGTTGCAAAGCAAAGAGCAAAGAAGGAGGAGAAGC  700

seq1  ATGAGACGAGGTCTCTGGCACGTGCACAGGCATAATGACTGCTTCCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACGAGGTCTCTGGCACGTGCACAGGCATAATGACTGCTTCCAAAT  750

seq1  GCTTGACATTGACTACCTGGTCCCCAGAAATCTGAGCGAATGTGCTGCTG  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTTGACATTGACTACCTGGTCCCCAG-AATCTGAGCGAATGTGCTGCTG  799

seq1  TTATTTTTAAGATCTCTCAGTTATGGTGCTTCATTAGAAACTACTGTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAGATCTCTCAGTTATGGTGCTTCATTAGAAACTACTGTATC  849

seq1  TGGATGCTACATTGTAGGGTATTTTTGTTTCTATCTTAATGAACCCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGATGCTACATTGTAGGGTATTTTTGTTTCTATCTTAATGAA-CCCCAA  898

seq1  AGGCTTTGGTTGCCAGACCGTGGCATTATTAGAAGGCTATGAAAGCTCGG  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGCTTTGGTTGCCAGACCG-GGCATTATTAGAAGGCTATGAAAGCTCGG  947

seq1  GAGATGGAGCACAATGGGAGGGAGCTAGGCGACTGGAGGATG-TCTTTCA  999
      |||||||||||| ||||   |||||||||||||||||||||| |||||||
seq2  GAGATGGAGCAC-ATGG--AGGAGCTAGGCGACTGGAGGATGTTCTTTCA  994

seq1  AGGGTATATCAAGACTCTAGCTCTGGTCCTTCTGTTTTCTGGCACCATGA  1049
      |||||||||| ||||||||||||||||||||||||||  | |||||||||
seq2  AGGGTATATC-AGACTCTAGCTCTGGTCCTTCTGTTT--TTGCACCATGA  1041

seq1  AGTGAGCAGCTCGC-TCTGTCGTACACTCTACCTTGGAGTTCTGCTTCAT  1098
      ||||| |||||||| ||||||||||||||||||||| |  ||||| || |
seq2  AGTGAACAGCTCGCTTCTGTCGTACACTCTACCTTGAA--TCTGC-TCTT  1088

seq1  CACAGGACAAAAATACAAGGACTGAATCCACTATGAACTGAGAC  1142
      ||  |||||||| ||||||||||  || ||||||| ||||||||
seq2  CA-GGGACAAAATTACAAGGACTTGAT-CACTATGGACTGAGAC  1130

seq1: chr5_18084511_18084575
seq2: B6Ng01-136L06.g_385_449 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAAGATAGTGGAGCATGTGTT  50

seq1  CTTCTTACCAGTTGG  65
      ||||||||| |||||
seq2  CTTCTTACCGGTTGG  65