BAC Information

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BAC

Clone NameB6Ng01-136P22
Chromosome4 (Build37)
Map Location 121,292,453 - 121,376,300
singlet/doubletdoublet
Overlap geneLOC666927
Upstream geneCited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
Downstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136P22.bB6Ng01-136P22.g
ACCDH936625DH936626
length702798
definitionDH936625|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P22, 5' end.DH936626|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,375,756 - 121,376,300)(121,292,453 - 121,293,293)
sequence
gaattccataaagaatcccaaaagattcactttgtatttctgcccaacta
tacttctgaagaatctgcaaacctcatcccatctttctgattctaaagat
actagagttgtagtggagaagaaggacatatttaccttcagctgggtatt
aggaggagagctaaagcattgtagccacagactgccatggtggggactta
aaagggaaaactcagtttggaaacagagggagtttctggtttctggctct
ttcaggtttcctagaattaaaaaattctttgtgtcttagtcagggtttct
attcctgcacaaacatcatgaccaagaagcaagttggaaaggaatgggtt
tattcaacttatagtttccacattgctgttgaccacaaaggatgtcagga
ctggaactaaagaagctcaggaagcaggagatgatgcagaggccatggag
ggatgttactggcttactcagcttgctttattgtagaacccaagactacc
agcccagagatggtatcacccacaataggccctccccacttaatcactaa
ttgagaaaatgcaccacagctgaatctcatggaggcacttccctgctgaa
gctcctttctctgtgataactccagcctgtgtcaagttgacacaaaacca
gccagtacaattgaccccttgtcaccttgacgcataaacacatcactatt
aa
gaattctaggttacctcaggctatatggaattaaagaagaccatagccaa
gttgtagtgtcacaaatgagtaaagacttgcactaccaagcataatgttc
tgagttcaatccctgggatccatatgtgataatgaaagaattgactcaag
agaaatgttctctgattctttcatgtgttgaaatgtgtcacacatgcaca
aacacacacacacacacacacacacacacacacacacaaacagggagaga
gagagagagagagagagagagagagagagagagagagagagagaatgtct
cagttgtgctcaccctccaagctacccaaccttggtaaaaaacttcactt
tcaaattgtttcaaccaaaaaactgtggtatcatctctcccccttcacct
ctcagtccatatctaaacccttgttgccactctcaaatgtgttaaagtcc
caccacttaaccacacttcatgttaccaaacacctgtcactgtacagctc
tgagttacttgcatctctggagtttaaggtctgaagtgtcccttgcagct
cctgtgacatctacatctttcttaacacagcaactacacagaatgagaca
cttgtggacaagacagacatgttctcataccttaatcatcaatctgacac
tatacagtctctctcttccttcttagtcctgaatgtacctggccttattc
cttcagctatcatagagaagtaatcactgctagcacaggtaatcagatct
ccagaccaacagcactagcttatgttatatggatctccttgagagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121375756_121376300
seq2: B6Ng01-136P22.b_48_592 (reverse)

seq1  GATTAAGTGGGGAGGGCCTATTGTGGGTGATACCATCTCTGGGCTGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTGGGGAGGGCCTATTGTGGGTGATACCATCTCTGGGCTGGTAG  50

seq1  TCTTGGGTTCTACAATAAAGCAAGCTGAGTAAGCCAGTAACATCCCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTTCTACAATAAAGCAAGCTGAGTAAGCCAGTAACATCCCTCCA  100

seq1  TGGCCTCTGCATCATCTCCTGCTTCCTGAGCTTCTTTAGTTCCAGTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTGCATCATCTCCTGCTTCCTGAGCTTCTTTAGTTCCAGTCCTG  150

seq1  ACATCCTTTGTGGTCAACAGCAATGTGGAAACTATAAGTTGAATAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTTGTGGTCAACAGCAATGTGGAAACTATAAGTTGAATAAACCC  200

seq1  ATTCCTTTCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAA  250

seq1  CCCTGACTAAGACACAAAGAATTTTTTAATTCTAGGAAACCTGAAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTAAGACACAAAGAATTTTTTAATTCTAGGAAACCTGAAAGAGC  300

seq1  CAGAAACCAGAAACTCCCTCTGTTTCCAAACTGAGTTTTCCCTTTTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAGAAACTCCCTCTGTTTCCAAACTGAGTTTTCCCTTTTAAGT  350

seq1  CCCCACCATGGCAGTCTGTGGCTACAATGCTTTAGCTCTCCTCCTAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCATGGCAGTCTGTGGCTACAATGCTTTAGCTCTCCTCCTAATAC  400

seq1  CCAGCTGAAGGTAAATATGTCCTTCTTCTCCACTACAACTCTAGTATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAAGGTAAATATGTCCTTCTTCTCCACTACAACTCTAGTATCTT  450

seq1  TAGAATCAGAAAGATGGGATGAGGTTTGCAGATTCTTCAGAAGTATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCAGAAAGATGGGATGAGGTTTGCAGATTCTTCAGAAGTATAGTT  500

seq1  GGGCAGAAATACAAAGTGAATCTTTTGGGATTCTTTATGGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAAATACAAAGTGAATCTTTTGGGATTCTTTATGGAATTC  545

seq1: chr4_121292453_121293293
seq2: B6Ng01-136P22.g_67_864

seq1  GAATTCTAGGTTACCTCAGGCTATATGGAATTAAAGAAGACCATAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTTACCTCAGGCTATATGGAATTAAAGAAGACCATAGCCAA  50

seq1  GTTGTAGTGTCACAAATGAGTAAAGACTTGCACTACCAAGCATAATGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTGTCACAAATGAGTAAAGACTTGCACTACCAAGCATAATGTTC  100

seq1  TGAGTTCAATCCCTGGGATCCATATGTGATAATGAAAGAATTGACTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAATCCCTGGGATCCATATGTGATAATGAAAGAATTGACTCAAG  150

seq1  AGAAATGTTCTCTGATTCTTTCATGTGTTGAAATGTGTCACACATGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTCTCTGATTCTTTCATGTGTTGAAATGTGTCACACATGCACA  200

seq1  AACACACACACACACACACACACACACACACACACACAAACAGGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACACACACACACACACACACACACAAACAGGGAGAGA  250

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTCT  300

seq1  CAGTTGTGCTCACCCTCCAAGCTACCCAACCTTGGTAAAAAACTTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGCTCACCCTCCAAGCTACCCAACCTTGGTAAAAAACTTCACTT  350

seq1  TCAAATTGTTTCAACCAAAAAACTGTGGTATCATCTCTCCCCCTTCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGTTTCAACCAAAAAACTGTGGTATCATCTCTCCCCCTTCACCT  400

seq1  CTCAGTCCATATCTAAACCCTTGTTGCCACTCTCAAATGTGTTAAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCATATCTAAACCCTTGTTGCCACTCTCAAATGTGTTAAAGTCC  450

seq1  CACCACTTAACCACACTTCATGTTACCAAACACCTGTCACTGTACAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTAACCACACTTCATGTTACCAAACACCTGTCACTGTACAGCTC  500

seq1  TGAGTTACTTGCATCTCTGGAGTTTAAGGTCTGAAGTGTCCCCTTGCAGC  550
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAGTTACTTGCATCTCTGGAGTTTAAGGTCTGAAGTGT-CCCTTGCAGC  549

seq1  TCCTGTGACATCTACAATCTTTTCTTAACACAGCAACTACAACAGAAATG  600
      ||||||||||||||| ||| |||||||||||||||||||| |||| ||||
seq2  TCCTGTGACATCTAC-ATC-TTTCTTAACACAGCAACTAC-ACAG-AATG  595

seq1  AGGACACTTGTGGGACAAGACAGACATGTTCTCATACCTTTAATCCATCA  650
      | ||||||||| |||||||||||||||||||||||||| ||||| |||||
seq2  A-GACACTTGT-GGACAAGACAGACATGTTCTCATACC-TTAAT-CATCA  641

seq1  ATCCTGACACTATACAGTCTCTCTCTTCCCTTTCTTTAGTTCCTGGAATG  700
      || ||||||||||||||||||||||||||  ||| |||| |||| |||||
seq2  AT-CTGACACTATACAGTCTCTCTCTTCC--TTC-TTAG-TCCT-GAATG  685

seq1  TACCTGGCCCTTATTCCTTTTCAGCTATCATAGGAGGAAAAAGTAAATCA  750
      ||||||| |||||||||  ||||||||||||||     | |||| |||| 
seq2  TACCTGG-CCTTATTCC--TTCAGCTATCATAG-----AGAAGT-AATC-  725

seq1  ACTGCCTAGCAACAGGGGTAAATCCAGGGATTCTCCAGGACCAACAGGCC  800
      |||| ||||| |||  |||||   |||    |||||| |||||||||  |
seq2  ACTG-CTAGC-ACA--GGTAA--TCAG---ATCTCCA-GACCAACAG--C  763

seq1  ACTAAGCTTAATGTTATATGGGGAATCTCCTTGAGAAGATT  841
      ||| ||||| |||||||||||   ||||||||||| |||||
seq2  ACT-AGCTT-ATGTTATATGG---ATCTCCTTGAG-AGATT  798