BAC Information

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BAC

Clone NameB6Ng01-137B04
Chromosome4 (Build37)
Map Location 47,348,348 - 47,425,005
singlet/doubletdoublet
Overlap geneTgfbr1, LOC666236
Upstream geneFoxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1
Downstream geneLOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17, Txndc4, Invs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137B04.bB6Ng01-137B04.g
ACCDH936683DH936684
length1,1381,006
definitionDH936683|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B04, 5' end.DH936684|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,423,849 - 47,425,005)(47,348,348 - 47,349,357)
sequence
gaattcattgctaccatgtaaatcaagcagttgcaagatctgcacatatg
agataaaaagactgaattaaaagctgccttcctcaaagggtagtgagacc
tcaaaactccactaactctacccttcccaagatagaatccacaaatactt
acagctacataacatgtgaaagtcacctacacttgtacattcatattaac
tatatctgccttcctagaaaaaggcctattatttaacattaaccacattt
gaattttaaatgcaattcctttccaaaaaagaaaaatcaaaacaaaacaa
aacactgctttgatcaaataaagaaaaagaaatggcttacagaacagcat
acaacttttccttcggcaatagacaagcctcccctttcaaaaggagtctg
tataccataatgattacatccataaagcactgtacatgtttggagtgcca
cttcacttcttaaaataaactcaggctaaacgtctcaactgcagagctcc
agtgctcctgtggggtgttcccgcatggcagtcactgcttatcaatgcta
cagccttgcctcagtggttcaagcacatctgggtaggagaaaggcatgaa
gactgaatgacatctatcacaaaaaccctcaaaaaacaaaaacaaaccca
gaaaaggtttaggttactcagaaaaataaactttttgaatgaaaatgata
caggacttaacaccgcctttaagtagttctgttcgtttccacttagacag
atgcaaaagtagcacttactggtgtagcacaaccctactgtgaaggtgtg
ttgtgttcagagtgtgaaggagctgtgcacaaatacaacggagcaactgt
gcccccacgcctccacgaggtcatattttttagactatagagtttaaagt
gttagtttaagatcttgaaaattatagaacagtacattcaaagtgaacca
aggaacactagtggttcagagtcctctgagaatgtactactaggagtgaa
aatcagaagtgcttcatttagtgccacaccccagctctcacccttacaga
gtcaacagcacagcagctccttaaggctgcagtgtctttaaacagcttgg
tataaaacaaagtgactaccaacattctgtactgtctg
gaattcagacttgggagtcaccagtgtgcccatgctggtagaaagcaggg
aagcatttgattgttccagaagaggtaaagacaaagagagatggcctaga
acacatttgtgagaagaagagtgcttggaggtggacagaggggagaacag
tcaaagatcactccacctgagctcttgcttcgtggttcatctgcctgact
tccagagctttcccactggagccctccctgggtggtggagaagtggaggg
aagaggccaactgcaaagttcttacagtgtccagagccctgtctaaagga
aagagaaggcactgacctagaccactcctggacagaaatcttacatataa
actcttctggaaccactagaatttttgtcttcatcaacttaagtgacttc
agtgcttggggtgagtgagactgtcattctttaatgagtgagcggagggg
gtggctggctaggttggcgttacaatggtgagacaagtgattgtctgtgg
ccatctgcctcgctaaaaagaaagatgggctgaaaggggtatctgtggat
gctgaagggagaaaggatgaagagatgaacaggtgagttctttgatttat
ttggtcctgtctctgaggagtattgtcttcccttcttctcccgtgctctt
gaagaccaaggaagagagaaaagcactcgcagagagccagcctcctccat
tggctttgttttgttttgttttttcataagcaagaggaagactttcatct
aagagagataaataaatggaactctaaaacaggatgcagtgcagaacatt
ctagaagtccaggcactcattttgtaaggtcggtacagtcagtggacctc
tgggagtttctttatttcctttagttcagaactaaattcctttgggaagt
acctaaactaaccatcccaaattcattaccacaagtgaggagggcttagg
gttgttacattcttgaactgaaggaagaggagtagagaacctagctgttc
cttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_47423849_47425005
seq2: B6Ng01-137B04.b_46_1183 (reverse)

seq1  CAGACAGTTACAGAATGTTGTGTAGTCTACTTTTGTTTTTATTAACAAAG  50
      ||||||| |||||||||||| |||||| |||||   ||||||  || |||
seq2  CAGACAG-TACAGAATGTTG-GTAGTC-ACTTT--GTTTTAT--ACCAAG  43

seq1  CTTGTTTTTAAAGACAACTGCCAGCCCTTAGGGAGCTGCTGTGCTGTTGA  100
      |   | ||||||||| |||| ||| ||||| |||||||||||||||||||
seq2  C---TGTTTAAAGAC-ACTG-CAG-CCTTAAGGAGCTGCTGTGCTGTTGA  87

seq1  CCTTCTGTAAGGGTGAAGGAGCTGGGGTGTGGCACTAAATGAAGCACTTC  150
      |  |||||||||||||  ||||||||||||||||||||||||||||||||
seq2  C--TCTGTAAGGGTGA--GAGCTGGGGTGTGGCACTAAATGAAGCACTTC  133

seq1  TGATTTTCACTCCTAGTAGTACATTCTCAGAGGACTCTGAACCACTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCACTCCTAGTAGTACATTCTCAGAGGACTCTGAACCACTAGTG  183

seq1  TTTCCTTGGTTCACTTTGAATGTACTGTTCTATAATTTTTCAAGATCTTA  250
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -TTCCTTGGTTCACTTTGAATGTACTGTTCTATAA-TTTTCAAGATCTTA  231

seq1  AACTAACACTTTAAACTCTATAGTCTAAAAAATATGACCTCGTGGAGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACACTTTAAACTCTATAGTCTAAAAAATATGACCTCGTGGAGGCG  281

seq1  TGGGGGCACAGTTGCTCCGTTGTATTTGTGCACAGCTCCTTCACACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCACAGTTGCTCCGTTGTATTTGTGCACAGCTCCTTCACACTCTG  331

seq1  AACACAACACACCTTCACAGTAGGGTTGTGCTACACCAGTAAGTGCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACACACCTTCACAGTAGGGTTGTGCTACACCAGTAAGTGCTACT  381

seq1  TTTGCATCTGTCTAAGTGGAAACGAACAGAACTACTTAAAGGCGGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCTGTCTAAGTGGAAACGAACAGAACTACTTAAAGGCGGTGTTA  431

seq1  AGTCCTGTATCATTTTCATTCAAAAAGTTTATTTTTCTGAGTAACCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTATCATTTTCATTCAAAAAGTTTATTTTTCTGAGTAACCTAAA  481

seq1  CCTTTTCTGGGTTTGTTTTTGTTTTTTGAGGGTTTTTGTGATAGATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGGGTTTGTTTTTGTTTTTTGAGGGTTTTTGTGATAGATGTCA  531

seq1  TTCAGTCTTCATGCCTTTCTCCTACCCAGATGTGCTTGAACCACTGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTCATGCCTTTCTCCTACCCAGATGTGCTTGAACCACTGAGGC  581

seq1  AAGGCTGTAGCATTGATAAGCAGTGACTGCCATGCGGGAACACCCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTAGCATTGATAAGCAGTGACTGCCATGCGGGAACACCCCACAG  631

seq1  GAGCACTGGAGCTCTGCAGTTGAGACGTTTAGCCTGAGTTTATTTTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGAGCTCTGCAGTTGAGACGTTTAGCCTGAGTTTATTTTAAGA  681

seq1  AGTGAAGTGGCACTCCAAACATGTACAGTGCTTTATGGATGTAATCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTGGCACTCCAAACATGTACAGTGCTTTATGGATGTAATCATTA  731

seq1  TGGTATACAGACTCCTTTTGAAAGGGGAGGCTTGTCTATTGCCGAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATACAGACTCCTTTTGAAAGGGGAGGCTTGTCTATTGCCGAAGGAA  781

seq1  AAGTTGTATGCTGTTCTGTAAGCCATTTCTTTTTCTTTATTTGATCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTATGCTGTTCTGTAAGCCATTTCTTTTTCTTTATTTGATCAAAG  831

seq1  CAGTGTTTTGTTTTGTTTTGATTTTTCTTTTTTGGAAAGGAATTGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTGTTTTGTTTTGATTTTTCTTTTTTGGAAAGGAATTGCATTT  881

seq1  AAAATTCAAATGTGGTTAATGTTAAATAATAGGCCTTTTTCTAGGAAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAAATGTGGTTAATGTTAAATAATAGGCCTTTTTCTAGGAAGGC  931

seq1  AGATATAGTTAATATGAATGTACAAGTGTAGGTGACTTTCACATGTTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGTTAATATGAATGTACAAGTGTAGGTGACTTTCACATGTTATG  981

seq1  TAGCTGTAAGTATTTGTGGATTCTATCTTGGGAAGGGTAGAGTTAGTGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTAAGTATTTGTGGATTCTATCTTGGGAAGGGTAGAGTTAGTGGA  1031

seq1  GTTTTGAGGTCTCACTACCCTTTGAGGAAGGCAGCTTTTAATTCAGTCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGGTCTCACTACCCTTTGAGGAAGGCAGCTTTTAATTCAGTCTT  1081

seq1  TTTATCTCATATGTGCAGATCTTGCAACTGCTTGATTTACATGGTAGCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCATATGTGCAGATCTTGCAACTGCTTGATTTACATGGTAGCAA  1131

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1138

seq1: chr4_47348348_47349357
seq2: B6Ng01-137B04.g_68_1073

seq1  GAATTCAGACTTGGGAGTCACCAGTGTGCCCATGCTGGTAGAAAGCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTTGGGAGTCACCAGTGTGCCCATGCTGGTAGAAAGCAGGG  50

seq1  AAGCATTTGATTGTTCCAGAAGAGGTAAAGACAAAGAGAGATGGCCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGATTGTTCCAGAAGAGGTAAAGACAAAGAGAGATGGCCTAGA  100

seq1  ACACATTTGTGAGAAGAAGAGTGCTTGGAGGTGGACAGAGGGGAGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTGTGAGAAGAAGAGTGCTTGGAGGTGGACAGAGGGGAGAACAG  150

seq1  TCAAAGATCACTCCACCTGAGCTCTTGCTTCGTGGTTCATCTGCCTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCACTCCACCTGAGCTCTTGCTTCGTGGTTCATCTGCCTGACT  200

seq1  TCCAGAGCTTTCCCACTGGAGCCCTCCCTGGGTGGTGGAGAAGTGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCTTTCCCACTGGAGCCCTCCCTGGGTGGTGGAGAAGTGGAGGG  250

seq1  AAGAGGCCAACTGCAAAGTTCTTACAGTGTCCAGAGCCCTGTCTAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCAACTGCAAAGTTCTTACAGTGTCCAGAGCCCTGTCTAAAGGA  300

seq1  AAGAGAAGGCACTGACCTAGACCACTCCTGGACAGAAATCTTACATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGCACTGACCTAGACCACTCCTGGACAGAAATCTTACATATAA  350

seq1  ACTCTTCTGGAACCACTAGAATTTTTGTCTTCATCAACTTAAGTGACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTGGAACCACTAGAATTTTTGTCTTCATCAACTTAAGTGACTTC  400

seq1  AGTGCTTGGGGTGAGTGAGACTGTCATTCTTTAATGAGTGAGCGGAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGGGTGAGTGAGACTGTCATTCTTTAATGAGTGAGCGGAGGGG  450

seq1  GTGGCTGGCTAGGTTGGCGTTACAATGGTGAGACAAGTGATTGTCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGCTAGGTTGGCGTTACAATGGTGAGACAAGTGATTGTCTGTGG  500

seq1  CCATCTGCCTCGCTAAAAAGAAAGATGGGCTGAAAGGGGTATCTGTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCCTCGCTAAAAAGAAAGATGGGCTGAAAGGGGTATCTGTGGAT  550

seq1  GCTGAAGGGAGAAAGGATGAAGAGATGAACAGGTGAGTTCTTTGATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGGAGAAAGGATGAAGAGATGAACAGGTGAGTTCTTTGATTTAT  600

seq1  TTGGTCCTGTCTCTGAGGAGTATTGTCTTCCCTTCTTCTCCCGTGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGTCTCTGAGGAGTATTGTCTTCCCTTCTTCTCCCGTGCTCTT  650

seq1  GAAGACCAAGGAAGAGAGAAAAGCACTCGCAGAGAGCCAGCCTCCTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAAGGAAGAGAGAAAAGCACTCGCAGAGAGCCAGCCTCCTCCAT  700

seq1  TGGC-TTGTTTTGTTTTGTTTTTTCATAAGCAAGAAGGAAGAC-TTCATC  748
      |||| ||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TGGCTTTGTTTTGTTTTGTTTTTTCATAAGCAAG-AGGAAGACTTTCATC  749

seq1  TAAGAGAGATAAATAAATGGAACTCTAAAACAGGATGCAGTGCAGAACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGATAAATAAATGGAACTCTAAAACAGGATGCAGTGCAGAACAT  799

seq1  TCTAGAAGTCCAGGCACTCATTCTGTAAGGTCGGTACAGTCAGTGGACCT  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTAGAAGTCCAGGCACTCATTTTGTAAGGTCGGTACAGTCAGTGGACCT  849

seq1  CTGGTAGTTTCTTTTATTTCCTTTAGCTTCAGAACTAAAATCCTTTGGAA  898
      |||| |||||| |||||||||||||| |||||||||||| |||||||| |
seq2  CTGGGAGTTTC-TTTATTTCCTTTAG-TTCAGAACTAAATTCCTTTGGGA  897

seq1  AGTACCTAAACTAACCATCTCAAATTCATTACCACAAGTGAGGAAGGGCT  948
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AGTACCTAAACTAACCATCCCAAATTCATTACCACAAGTGAGG-AGGGCT  946

seq1  TAGGGTTGGTTACATTCTGGAACTGAAGGGAGAGGAGAGGAAGACACAAG  998
      ||||||| |||||||||| |||||||||| |||||||  | |||  | ||
seq2  TAGGGTT-GTTACATTCTTGAACTGAAGGAAGAGGAGTAG-AGAACCTAG  994

seq1  CTGTTCCTTGGG  1010
      ||||||||||||
seq2  CTGTTCCTTGGG  1006