BAC Information

Click to search

BAC

Clone NameB6Ng01-137I06
Chromosome4 (Build37)
Map Location 145,593,070 - 145,729,229
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137I06.bB6Ng01-137I06.g
ACCDH937015DH937016
length1,129989
definitionDH937015|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I06, 5' end.DH937016|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,728,096 - 145,729,229)(145,593,070 - 145,594,065)
sequence
gaattcctcggcctttatcatcataccaatccttagttaaattaactggt
aaataaacataatcaggttgcttaacaatcaaaaaattacttaaggtata
attaacacagttagttatttgacaattagtacagttaacagtattattat
ctatcaataaattcccactcaaagaagcctatggctctggaacacacaaa
catacaaaaacttcagtcttattgtgtttgtcctgaaatgccatgatatt
ccacataggaatccaggtaattgtggactcccactcgccagcaagtaaga
tgccacaacaggatccttctgcaacatgtttattgggagagcatggactg
agtaggcgaaagaccccgagccccagaaatggtgctacttatataggcct
agggagtgacgtgtccataactgattggttatgctaccagtacctcatta
atatgcctcgagccaggcagtgactcggcaaaaaactctggcacatgcgc
acattggttgtttacccatattcatgggcattggcttactgaaaccagtg
ccatcttgtaatggcgtttgcggcttcccacatctccccctttttattgt
aataaaatgatgctggattaggcctatgcaattatgtccatccactacgg
ctcctgttttaggtcgttcctctgtgtcacagccttacctgtcatagggt
aaccctatcgccaccaggccccgtgtcttaggttgctctgtgcatgagga
aagttgcccatcttttggataacgcaatgctgtgtgacagtaaattgcta
aatgacttattttgttcgtcctgaatgccatgatattcccgataggaagc
caggtgatgttaattctttaactgttatcatcccagggctgcaatggctt
ttcttaatgaagaaaaataaagttcatatttttttgtccaattccatgaa
ccaattaataggacgatgattagtataatccaaaatattccaatccacac
agggtgtattagagcaaaggcatgaaattgtaatatatggtcatcagaat
actctcctaaatatttggttgattgaattaacagaatatcctacagtctc
atctccaagtgacggatgaattataggtg
gaattccaggatagccagggctatacagagaaaccctgtctcaaaaaaac
aaaaacaaaaacaaaaaacaaaaacaaagaaacaaacaaacaaaaaaacc
tgtctcaaaaaacaaacaaagaacaacaacaaaacaacaaaaagaaagta
tcatcattgcagcttccacaatcacaggtcactttcaaacactggaaccc
atagaagaaggactgttttgttgagcagagatgaaagtgaagcagaggcc
agctccctgtggtgccaactgctctgtgtcaagtcgcagttttgctaaca
tcactgacatgagggtgggcagagcagactgctcttctgaggcctccttt
gctgcactgccatctaaaccatacagaggctgttctactccacgcggtaa
gggattggataaggaatgttgtggtgaggatcatgcatctggtggaacac
ttctgccagggctggttcctggcccgcttcccccagcaaactcaaaggaa
tcgctaagtttatgtccccctagaagtgcctttcccttgctagtgtcata
tggctcagctttccttttccgatttcgcaggtcattctgctttttcctca
ggagtctctacttctttatcactcaaggaccccacgctgcacaaactctg
gttggaagactcactgttgagtggtcccttacttacaccaactccagtga
acctggcctctagtaattcctgccttcgtgggtccagactatgcagttct
tccatcatttctgccgccgctgccgctccactctcctctcagaggggccc
cgacccgaccgggctgctgaccgctctgctctccctctgggcaggcccgg
gggcggagccggggcctctcctgagcgccgcaaacccgccctggtagccg
ccgccccgtcgggctcacacagggcgggctggggaggggggccaggaggc
acagatcccgagcttgccgatggagccagaagctgacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145728096_145729229
seq2: B6Ng01-137I06.b_48_1176 (reverse)

seq1  CACCTATAATTCATCCTGTCACTTGG-GATGAGACTGTA-GATATTACTG  48
      |||||||||||||||| ||||||||| |||||||||||| |||||| |||
seq2  CACCTATAATTCATCC-GTCACTTGGAGATGAGACTGTAGGATATT-CTG  48

seq1  TTTATGTCAATCAAACCAAATATTTAGGAGAGTATTCTGATGGACATATA  98
      || || |||||| |||||||||||||||||||||||||||||  ||||||
seq2  TTAAT-TCAATC-AACCAAATATTTAGGAGAGTATTCTGATGACCATATA  96

seq1  TTACAATTTCATGCCTTTGCTCTAATACCACCCTGTGT-GATTGGAATAT  147
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TTACAATTTCATGCCTTTGCTCTAATA-CACCCTGTGTGGATTGGAATAT  145

seq1  TTTGGATTATACTAATCATCGTCCTATTAATTTGGTTCATGGAATTGGGA  197
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TTTGGATTATACTAATCATCGTCCTATTAA-TTGGTTCATGGAATT-GGA  193

seq1  CAAAAAATAATGAAACTTATTTTTCTTCATTAAGAAAAGCCATTGCAGCC  247
      |||||||  |||||  ||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATATGAACTTTATTTTTCTTCATTAAGAAAAGCCATTGCAGCC  243

seq1  CTTGGGATGATAACAGTTAAAAGAATTAACATCACCTGGCTTCCTATCGG  297
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  C-TGGGATGATAACAGTT-AAAGAATTAACATCACCTGGCTTCCTATCGG  291

seq1  GAATATCATGGCATTTCAGGACGAACAAAATAAGTCATTTAGCAA-TTAC  346
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GAATATCATGGCA-TTCAGGACGAACAAAATAAGTCATTTAGCAATTTAC  340

seq1  TGTCACACAGCATTGCGTTATCC-AAAGATGGGCAACTTTCCTCATGCAC  395
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCACACAGCATTGCGTTATCCAAAAGATGGGCAACTTTCCTCATGCAC  390

seq1  AGAGCAACCTAAGACACGGGGCCTGGTGGCGATAGGGTTACCCTATGACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACCTAAGACACGGGGCCTGGTGGCGATAGGGTTACCCTATGACA  440

seq1  GGTAAGGCTGTGACACAGAGGAACGACCTAAAACAGGAGCCGTAGTGGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGCTGTGACACAGAGGAACGACCTAAAACAGGAGCCGTAGTGGAT  490

seq1  GGACATAATTGCATAGGCCTAATCCAGCATCATTTTATTACAATAAAAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAATTGCATAGGCCTAATCCAGCATCATTTTATTACAATAAAAAG  540

seq1  GGGGAGATGTGGGAAGCCGCAAACGCCATTACAAGATGGCACTGGTTTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGATGTGGGAAGCCGCAAACGCCATTACAAGATGGCACTGGTTTCA  590

seq1  GTAAGCCAATGCCCATGAATATGGGTAAACAACCAATGTGCGCATGTGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAATGCCCATGAATATGGGTAAACAACCAATGTGCGCATGTGCC  640

seq1  AGAGTTTTTTGCCGAGTCACTGCCTGGCTCGAGGCATATTAATGAGGTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTTTGCCGAGTCACTGCCTGGCTCGAGGCATATTAATGAGGTAC  690

seq1  TGGTAGCATAACCAATCAGTTATGGACACGTCACTCCCTAGGCCTATATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCATAACCAATCAGTTATGGACACGTCACTCCCTAGGCCTATATA  740

seq1  AGTAGCACCATTTCTGGGGCTCGGGGTCTTTCGCCTACTCAGTCCATGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACCATTTCTGGGGCTCGGGGTCTTTCGCCTACTCAGTCCATGCT  790

seq1  CTCCCAATAAACATGTTGCAGAAGGATCCTGTTGTGGCATCTTACTTGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATAAACATGTTGCAGAAGGATCCTGTTGTGGCATCTTACTTGCT  840

seq1  GGCGAGTGGGAGTCCACAATTACCTGGATTCCTATGTGGAATATCATGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTGGGAGTCCACAATTACCTGGATTCCTATGTGGAATATCATGGC  890

seq1  ATTTCAGGACAAACACAATAAGACTGAAGTTTTTGTATGTTTGTGTGTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGACAAACACAATAAGACTGAAGTTTTTGTATGTTTGTGTGTTC  940

seq1  CAGAGCCATAGGCTTCTTTGAGTGGGAATTTATTGATAGATAATAATACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCATAGGCTTCTTTGAGTGGGAATTTATTGATAGATAATAATACT  990

seq1  GTTAACTGTACTAATTGTCAAATAACTAACTGTGTTAATTATACCTTAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTGTACTAATTGTCAAATAACTAACTGTGTTAATTATACCTTAAG  1040

seq1  TAATTTTTTGATTGTTAAGCAACCTGATTATGTTTATTTACCAGTTAATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTGATTGTTAAGCAACCTGATTATGTTTATTTACCAGTTAATT  1090

seq1  TAACTAAGGATTGGTATGATGATAAAGGCCGAGGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGATTGGTATGATGATAAAGGCCGAGGAATTC  1129

seq1: chr4_145593070_145594065
seq2: B6Ng01-137I06.g_70_1058

seq1  GAATTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAC  50

seq1  AAAAACAAAAACAAAAAACAAAAACAAAGAAACAAACAAACAAAAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAAAAACAAAAACAAAGAAACAAACAAACAAAAAAACC  100

seq1  TGTCTCAAAAAACAAACAAAGAACAACAACAAAACAACAAAAAGAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAACAAACAAAGAACAACAACAAAACAACAAAAAGAAAGTA  150

seq1  TCATCATTGCAGCTTCCACAATCACAGGTCACTTTCAAACACTGGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTGCAGCTTCCACAATCACAGGTCACTTTCAAACACTGGAACCC  200

seq1  ATAGAAGAAGGACTGTTTTGTTGAGCAGAGATGAAAGTGAAGCAGAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAAGGACTGTTTTGTTGAGCAGAGATGAAAGTGAAGCAGAGGCC  250

seq1  AGCTCCCTGTGGTGCCAACTGCTCTGTGTCAAGTCGCAGTTTTGCTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTGTGGTGCCAACTGCTCTGTGTCAAGTCGCAGTTTTGCTAACA  300

seq1  TCACTGACATGAGGGTGGGCAGAGCAGACTGCTCTTCTGAGGCCTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACATGAGGGTGGGCAGAGCAGACTGCTCTTCTGAGGCCTCCTTT  350

seq1  GCTGCACTGCCATCTAAACCATACAGAGGCTGTTCTACTCCACGCGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTGCCATCTAAACCATACAGAGGCTGTTCTACTCCACGCGGTAA  400

seq1  GGGATTGGATAAGGAATGTTGTGGTGAGGATCATGCATCTGGTGGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGATAAGGAATGTTGTGGTGAGGATCATGCATCTGGTGGAACAC  450

seq1  TTCTGCCAGGGCTGGTTCCTGGCCCGCTTCCCCCAGCAAACTCAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGGGCTGGTTCCTGGCCCGCTTCCCCCAGCAAACTCAAAGGAA  500

seq1  TCGCTAAGTTTATGTCCCCCTAGAAGTGCCTTTCCCTTGCTAGTGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAAGTTTATGTCCCCCTAGAAGTGCCTTTCCCTTGCTAGTGTCATA  550

seq1  TGGCTCAGCTTTCCTTTTCCGATTTCGCAGGTCATTCTGCTTTTTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCTTTCCTTTTCCGATTTCGCAGGTCATTCTGCTTTTTCCTCA  600

seq1  GGAGTCTCTACTTCTTTATCACTCAAGGACCCCACGCTGCACAAACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCTACTTCTTTATCACTCAAGGACCCCACGCTGCACAAACTCTG  650

seq1  GTTGGAAGACTCACTGTTGAGTGGTCCCTTACTTACACCAACTCCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGACTCACTGTTGAGTGGTCCCTTACTTACACCAACTCCAGTGA  700

seq1  ACCTGGCCTCTAGTAATTCCTGCCTTCGTGGGTCCAGACTATGCAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCTCTAGTAATTCCTGCCTTCGTGGGTCCAGACTATGCAGTTCT  750

seq1  TCCATCATTTCTGCCGCCGCTGCCGCTCCACTCTCCTCTCAGGAGGGGCC  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCATCATTTCTGCCGCCGCTGCCGCTCCACTCTCCTCTCA-GAGGGGCC  799

seq1  CCGACCCGACCGGGCTGCTGACCGCTCTGCTCTCCCCCTGGGCAGGCCC-  849
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  CCGACCCGACCGGGCTGCTGACCGCTCTGCTCTCCCTCTGGGCAGGCCCG  849

seq1  GGGGCGGAGCCGGGGCCTCTCCTGAGCGCCGCAAAACCCGCCCTGGTAGC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGGCGGAGCCGGGGCCTCTCCTGAGCGCCGC-AAACCCGCCCTGGTAGC  898

seq1  CGCCGCCCCGTCGGGCTCCACAACAGGGCGGGCTGGGGAGGGGGGCCACG  949
      ||||||||||||||||| ||| |||||||||||||||||||||||||| |
seq2  CGCCGCCCCGTCGGGCT-CAC-ACAGGGCGGGCTGGGGAGGGGGGCCA-G  945

seq1  GAGGCCACAGATCCCCGAGCTCGCGTATGGAGCCAGGAGGCTGACGC  996
      |||| ||||||| |||||||| ||  ||||||||| || ||||||||
seq2  GAGG-CACAGAT-CCCGAGCTTGCCGATGGAGCCA-GAAGCTGACGC  989