BAC Information

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BAC

Clone NameB6Ng01-137K16
Chromosome4 (Build37)
Map Location 107,817,610 - 107,979,849
singlet/doubletdoublet
Overlap geneEchdc2, Zyg11a, Zyg11b
Upstream gene2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
Downstream geneLOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137K16.bB6Ng01-137K16.g
ACCDH937127DH937128
length495614
definitionDH937127|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K16, 5' end.DH937128|Mus musculus domesticus DNA, BAC clone: B6Ng01-137K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,979,349 - 107,979,849)(107,817,610 - 107,818,222)
sequence
agagaactgtctttgtaagcacagacaataacctacctgggtgggatccc
atcctgagattaccattccaaccatgcctgaacctaaattcaatctgtca
caggctgaccttgaactcaggaatctgcctgcctttgtatctctagtgga
taccctacaacctttctaaatgtatcaatttttttcttctatggcatttt
ttttaaagatttattttatttttaactctgtatatgtgtttagacatgca
caagtacatgtgggttcccttggacccctgaggaggcagatccctggagc
aggtgatacaggcatttgtgagctgcctcacaggagtgctgagaactagg
tcttccattgtgagctgcctcacaggagtgctgagaactaggtcttccac
agtagcaatatgacctcttaacccatgaactgtctcttcatccccctttg
aatagcattaggttttattttgtatttaaaagtattttcgggctg
gaattcttaatcagtaacccagaggttccttaaaggactagtgtctagag
gtggaatctctcacagtggagtagaccctcccacatcaaccattaaccaa
ggaaatgctattgaaagtcaaggtgagggagacattcctcagctgagatt
ccttctaggtttggggcaagttgacaaaaacaagaaaacaagcctttgag
gtgtaatttgaaaaccaccaaaatggcacaaatggtgggagataagagaa
tcaattgcttattcttgcttggagaagccacatgggtacatcttacttta
ttctcttctgccttggggaacacataccatataaccacttcttcagagta
cctttctgtttttctgaaatatttgtgaaaattatttttaattatgtgta
ttagggtgggggtatgtgtacattcgagcaggtgcccacagaggccagag
cagcagatccctttgtgttggggccggccagcggctcatatgtccggatt
tgagcctggaagacatcttggaatctggaagaaaagagggagcctaggtg
ggtagagaaacaatggaaaccaaaacatgctagtctattcaaagttcaaa
ttctaatgtcggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107979349_107979849
seq2: B6Ng01-137K16.b_46_546 (reverse)

seq1  CAGCCCGAAAATACTTTTAAATACAAAATAAAACCTAATGCTATTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCGAAAATACTTTTAAATACAAAATAAAACCTAATGCTATTCAAAG  50

seq1  GGGGATGAAGAGACAGTTCATGGGTTAAGAGGTCATATTGCTACTGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGAAGAGACAGTTCATGGGTTAAGAGGTCATATTGCTACTGTGGA  100

seq1  AGACCTAGTTCTCAGCACTCCTGTGAGGCAGCTCACAATGGAAGACCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGTTCTCAGCACTCCTGTGAGGCAGCTCACAATGGAAGACCTAG  150

seq1  TTCTCAGCACTCCTGTGAGGCAGCTCACAAATGCCTGTATCACCTGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCACTCCTGTGAGGCAGCTCACAAATGCCTGTATCACCTGCTCC  200

seq1  AGGGATCTGCCTCCTCAGGGGTCCAAGGGAACCCACATGTACTTGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTGCCTCCTCAGGGGTCCAAGGGAACCCACATGTACTTGTGCAT  250

seq1  GTCTAAACACATATACAGAGTTAAAAATAAAATAAATCTTTAAAAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAACACATATACAGAGTTAAAAATAAAATAAATCTTTAAAAAAAAT  300

seq1  GCCATAGAAGAAAAAAATTGATACATTTAGAAAGGTTGTAGGGTATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGAAGAAAAAAATTGATACATTTAGAAAGGTTGTAGGGTATCCAC  350

seq1  TAGAGATACAAAGGCAGGCAGATTCCTGAGTTCAAGGTCAGCCTGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATACAAAGGCAGGCAGATTCCTGAGTTCAAGGTCAGCCTGTGACA  400

seq1  GATTGAATTTAGGTTCAGGCATGGTTGGAATGGTAATCTCAGGATGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATTTAGGTTCAGGCATGGTTGGAATGGTAATCTCAGGATGGGAT  450

seq1  CCCACCCAGGTAGGTTATTGTCTGTGCTTACAAAGACAGTTCTCTGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCAGGTAGGTTATTGTCTGTGCTTACAAAGACAGTTCTCTGAATT  500

seq1  C  501
      |
seq2  C  501

seq1: chr4_107817610_107818222
seq2: B6Ng01-137K16.g_71_684

seq1  GAATTCTTAATCAGTAACCCAGAGGTTCCTTAAAGGACTAGTGTCTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATCAGTAACCCAGAGGTTCCTTAAAGGACTAGTGTCTAGAG  50

seq1  GTGGAATCTCTCACAGTGGAGTAGACCCTCCCACATCAACCATTAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCTCTCACAGTGGAGTAGACCCTCCCACATCAACCATTAACCAA  100

seq1  GGAAATGCTATTGAAAGTCAAGGTGAGGGAGACATTCCTCAGCTGAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCTATTGAAAGTCAAGGTGAGGGAGACATTCCTCAGCTGAGATT  150

seq1  CCTTCTAGGTTTGGGGCAAGTTGACAAAAACAAGAAAACAAGCCTTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGGTTTGGGGCAAGTTGACAAAAACAAGAAAACAAGCCTTTGAG  200

seq1  GTGTAATTTGAAAACCACCAAAATGGCACAAATGGTGGGAGATAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTTGAAAACCACCAAAATGGCACAAATGGTGGGAGATAAGAGAA  250

seq1  TCAATTGCTTATTCTTGCTTGGAGAAGCCACATGGGTACATCTTACTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCTTATTCTTGCTTGGAGAAGCCACATGGGTACATCTTACTTTA  300

seq1  TTCTCTTCTGCCTTGGGGAACACATACCATATAACCACTTCTTCAGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTGCCTTGGGGAACACATACCATATAACCACTTCTTCAGAGTA  350

seq1  CCTTTCTGTTTTTCTGAAATATTTGTGAAAATTATTTTTAATTATGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTTTTTCTGAAATATTTGTGAAAATTATTTTTAATTATGTGTA  400

seq1  TTAGGGTGGGGGTATGTGTACATTCGAGCAGGTGCCCACAGAGGCCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTGGGGGTATGTGTACATTCGAGCAGGTGCCCACAGAGGCCAGAG  450

seq1  CAGCAGATCCCTTTGTGTTGGGGCCGGCCAGCGGCTCATATGTCCGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATCCCTTTGTGTTGGGGCCGGCCAGCGGCTCATATGTCCGGATT  500

seq1  TGAGCCTGGAAGACATCTTGGAATCTGGAAGAAAAGAGGGAGCCTAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGGAAGACATCTTGGAATCTGGAAGAAAAGAGGGAGCCTAGGTG  550

seq1  GGTAGAGAAACAATGG-AACCAAAACATGCTAGTCTATTCAAAGTTCAAA  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTAGAGAAACAATGGAAACCAAAACATGCTAGTCTATTCAAAGTTCAAA  600

seq1  TTCTAATGTCGGGA  613
      ||||||||||||||
seq2  TTCTAATGTCGGGA  614