BAC Information

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BAC

Clone NameB6Ng01-137M18
Chromosome4 (Build37)
Map Location 28,919,845 - 29,049,753
singlet/doubletdoublet
Overlap geneLOC100040907
Upstream geneTpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137M18.bB6Ng01-137M18.g
ACCDH937219DH937220
length1,152417
definitionDH937219|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M18, 5' end.DH937220|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,919,845 - 28,921,006)(29,049,331 - 29,049,753)
sequence
gaattctgagttttcaagaccccagtaggtattaaactctgcagttatca
tctgcttgtttggtatcagaatatgttcctatcaagttaccatcacattt
gacatatgggcaacactgttttattcctttcctttttctttcttctttta
ttcttttcttttttaaaatactaacaaaaaagtgtacttaaactaaacaa
ggcagaggattcagtgaacaaatttactagcttaacactcttacagattt
ttcctaatgtctgcaagatattattaggaaattactctgcatgtgagtta
ataacctgaaaaggaaaatctagctatgtgtacatgtacattttatgtta
tccaataacctgagtcaaacctctggaaatacctataaaggttatcttag
attgtggtacccttttctgaaccttcaagggagtatcttagttaaatatt
tgaggagaacaaataatactgaatcttgctctgcctgcctaacttggaaa
ggattagctgatgagccgcactggtcatctgcttcctaaggataccatgt
tgcctctcctgtaagctcctggcatcaaatctcccctgcctgttggacta
taccttcaaaatgtgagtcaaaaacattctttctcacttgtgttgctggt
atattatcaggacgtcaagacaagtaactaagacacctgtgcttaggtga
atatcatgcatttaatttaaaagtatgtagttctttgttctaaaattttc
tattgtatgtctatttcaaagccctacttggaaagcaaaacattgaaaga
ataggtgtgaatgagaaagagactcctcctcatgcagggccttctactca
atagcttttcataaaaagattccagcatccaagaatgctgacaagtggac
tgtgttattttgtcaggtttttgttcttgtgacaaagtaccttaggatac
actgaagagagtaaatatgttttggctcatcttcaatgtctcagcccaat
cattggcttcagggctgtgactttaagcagagcagagactcatagcccag
agcttcctggagtgatactgactgcttcaggagcagaaacaaaaataaca
aagggtctaagaagaaattaaatttgttaaggcatgcttcagtgacctac
ta
actcttctagatgctaacccctttggattttagtagtctctgatgcctct
tctcttactatcattcatttcttctagagctatgtattgagcctctactc
tgtgatgggccccatttctaacatagagccttaactaaagagatgggaaa
ctaagtaagtagtgttaagtagaaaaactaagtaaagaagaggtcagaaa
tgagttatgtacagttttctatagtgtggagacaaaatgaccaagctata
acaggcaaagcatgtgaagcagtgaaggcaggaagagaattgggtgatga
ggcaggaccatgataaggtaggataggtaaacaaggatactggtattcct
ggagcagcatgatctgatagaaaataacgccagggccaaaaagggggagt
gggtgggtaggggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28919845_28921006
seq2: B6Ng01-137M18.b_45_1196

seq1  GAATTCTGAGTTTTCAAGACCCCAGTAGGTATTAAACTCTGCAGTTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTTTCAAGACCCCAGTAGGTATTAAACTCTGCAGTTATCA  50

seq1  TCTGCTTGTTTGGTATCAGAATATGTTCCTATCAAGTTACCATCACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGTTTGGTATCAGAATATGTTCCTATCAAGTTACCATCACATTT  100

seq1  GACATATGGGCAACACTGTTTTATTCCTTTCCTTTTTCTTTCTTCTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGGGCAACACTGTTTTATTCCTTTCCTTTTTCTTTCTTCTTTTA  150

seq1  TTCTTTTCTTTTTTAAAATACTAACAAAAAAGTGTACTTAAACTAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTTTAAAATACTAACAAAAAAGTGTACTTAAACTAAACAA  200

seq1  GGCAGAGGATTCAGTGAACAAATTTACTAGCTTAACACTCTTACAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGATTCAGTGAACAAATTTACTAGCTTAACACTCTTACAGATTT  250

seq1  TTCCTAATGTCTGCAAGATATTATTAGGAAATTACTCTGCATGTGAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATGTCTGCAAGATATTATTAGGAAATTACTCTGCATGTGAGTTA  300

seq1  ATAACCTGAAAAGGAAAATCTAGCTATGTGTACATGTACATTTTATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGAAAAGGAAAATCTAGCTATGTGTACATGTACATTTTATGTTA  350

seq1  TCCAATAACCTGAGTCAAACCTCTGGAAATACCTATAAAGGTTATCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAACCTGAGTCAAACCTCTGGAAATACCTATAAAGGTTATCTTAG  400

seq1  ATTGTGGTACCCTTTTCTGAACCTTCAAGGGAGTATCTTAGTTAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTACCCTTTTCTGAACCTTCAAGGGAGTATCTTAGTTAAATATT  450

seq1  TGAGGAGAACAAATAATACTGAATCTTGCTCTGCCTGCCTAACTTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAACAAATAATACTGAATCTTGCTCTGCCTGCCTAACTTGGAAA  500

seq1  GGATTAGCTGATGAGCCGCACTGGTCATCTGCTTCCTAAGGATACCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGCTGATGAGCCGCACTGGTCATCTGCTTCCTAAGGATACCATGT  550

seq1  TGCCTCTCCTGTAAGCTCCTGGCATCAAATCTCCCCTGCCTGTTGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCTGTAAGCTCCTGGCATCAAATCTCCCCTGCCTGTTGGACTA  600

seq1  TACCTTCAAAATGTGAGTCAAAAACATTCTTTCTCACTTGTGTTGCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAAATGTGAGTCAAAAACATTCTTTCTCACTTGTGTTGCTGGT  650

seq1  ATATTATCAGGACGTCAAGACAAGTAACTAAGACACCTGTGCTTAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCAGGACGTCAAGACAAGTAACTAAGACACCTGTGCTTAGGTGA  700

seq1  ATATCATGCATTTAATTTAAAAGTATGTAGTTCTTTGTTCTAAAATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGCATTTAATTTAAAAGTATGTAGTTCTTTGTTCTAAAATTTTC  750

seq1  TATTGTATGTCTATTTCAAAGCCCTACTTGGAAAGCAAAACATTGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATGTCTATTTCAAAGCCCTACTTGGAAAGCAAAACATTGAAAGA  800

seq1  ATAGGTGTGAATGAGAAAGAGACTCCTCCTCATGCAGGGCCTTCTACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTGAATGAGAAAGAGACTCCTCCTCATGCAGGGCCTTCTACTCA  850

seq1  ATAGCTTTTCATAAAAAGATTCCAGCATCCAAGAATGCTGACAAAGTGGA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAGCTTTTCATAAAAAGATTCCAGCATCCAAGAATGCTGAC-AAGTGGA  899

seq1  CTGTGTTATTTTGTCAGGTTTTTGTTCCTGTGACAAAGTACCTTAGGATA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTGTTATTTTGTCAGGTTTTTGTTCTTGTGACAAAGTACCTTAGGATA  949

seq1  ACAACTGAAGAGAGTAAATATGTTTTGGCTCATCTTCAAATGTCTCAGCC  1000
         |||||||||||||||||||||||||||||||||| |||||||||| |
seq2  --CACTGAAGAGAGTAAATATGTTTTGGCTCATCTTC-AATGTCTCAG-C  995

seq1  CCAATCATTGGCTTCAGGGCTGTGACTTTAAGCAGAGCAGAGACTCATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATTGGCTTCAGGGCTGTGACTTTAAGCAGAGCAGAGACTCATAG  1045

seq1  CCCAGAAGCTTCCTGGAGTGATACTGACTGCTTCATGAGGCAGGAAACAA  1100
      ||||| ||||||||||||||||||||||||||||| || ||| |||||||
seq2  CCCAG-AGCTTCCTGGAGTGATACTGACTGCTTCAGGA-GCA-GAAACAA  1092

seq1  AAATAACAAAGGGTCATAAG-AGAAATTAAATTTGTTTAGGGCATGCTTT  1149
      ||||||||||||||| |||| |||||||||||||| ||| ||||||| ||
seq2  AAATAACAAAGGGTC-TAAGAAGAAATTAAATTTG-TTAAGGCATGC-TT  1139

seq1  CAGTGACCTACTA  1162
      |||||||||||||
seq2  CAGTGACCTACTA  1152

seq1: chr4_29049331_29049753
seq2: B6Ng01-137M18.g_69_491 (reverse)

seq1  CAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTATTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTATTTTCTA  50

seq1  TCAGATCATGCTGCTCCAGGAATACCAGTATCCTTGTTTACCTATCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCATGCTGCTCCAGGAATACCAGTATCCTTGTTTACCTATCCTAC  100

seq1  CTTATCATGGTCCTGCCTCATCACCCAATTCTCTTCCTGCCTTCACTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATGGTCCTGCCTCATCACCCAATTCTCTTCCTGCCTTCACTGCT  150

seq1  TCACATGCTTTGCCTGTTATAGCTTGGTCATTTTGTCTCCACACTATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCTTTGCCTGTTATAGCTTGGTCATTTTGTCTCCACACTATAGA  200

seq1  AAACTGTACATAACTCATTTCTGACCTCTTCTTTACTTAGTTTTTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTACATAACTCATTTCTGACCTCTTCTTTACTTAGTTTTTCTACT  250

seq1  TAACACTACTTACTTAGTTTCCCATCTCTTTAGTTAAGGCTCTATGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTACTTACTTAGTTTCCCATCTCTTTAGTTAAGGCTCTATGTTAG  300

seq1  AAATGGGGCCCATCACAGAGTAGAGGCTCAATACATAGCTCTAGAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGCCCATCACAGAGTAGAGGCTCAATACATAGCTCTAGAAGAAA  350

seq1  TGAATGATAGTAAGAGAAGAGGCATCAGAGACTACTAAAATCCAAAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATAGTAAGAGAAGAGGCATCAGAGACTACTAAAATCCAAAGGGG  400

seq1  TTAGCATCTAGAAGAGTGAATTC  423
      |||||||||||||||||||||||
seq2  TTAGCATCTAGAAGAGTGAATTC  423