BAC Information

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BAC

Clone NameB6Ng01-137N20
Chromosome4 (Build37)1 (Build37)
Map Location 133,519,500 - 133,520,626173,898,135 - 173,898,256
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151
Downstream geneHmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N20.bB6Ng01-137N20.g
ACCDH937269DH937270
length1,123941
definitionDH937269|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N20, 5' end.DH937270|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(133,519,500 - 133,520,626)(173,898,135 - 173,898,256)
sequence
gaattctaggtcagccatggctgtgcaaagaaatggtgtctggggatagg
tggggcgcagggagggagctgagactggttacagcaggtcctgagttggt
aagagttcactattaagaatttttgtctacatgtctgtgcaccacatgtg
cgcctggtacacagacagtcagaactagagttaaaaataccaggggttag
ccggtcatgtgtgagctagcaacttctgtaagtcactaagtcaccactga
gccatgcatcaatgccccagaagggtctgtttttggtgctgaaatggttt
tgatgtggccaaatttggtcttggacctgcatagtttaggatgaacttga
actttggccttgactaagcctcccaagtgtagtggggctacagtataata
gtataaaagtacagcaggtggcacatggctgtgtctgctttagtagatcc
aacaaagcagatgctaaaccggccaatctatgggaatagagatcaaagtt
gaagctcaacacacttatcccattatttggcaacagtgacctgcaactgg
gaaaactacctgccatgacacatggcggcaatgtctacttggtaactggc
ccagagactgccacagctcatggaagaactgcatgcagtccatggttaaa
cgatatttacaatctgaagaatggtactgaacccaattatagcttcaagt
tttgctcaagcaccaacctgctaaccataaccacaggctcccctctctgg
aactgtccccaaagtcagagtgaatgtccccaaggtacaggtccaacatt
cttttcttaagattcaatatatgagtacactgttcccaccgtctcagaca
gaaaacccatcccaaagctttaagaagttaactgttagcttgaccttgat
acaagaacactgccccaagaaaggccaacagcactctagtcggtctaggt
gtcggcaccaaacttgggcctgcaatcaatctctacacgtctggaggaac
catttcccaaacccactccccagttatttctgggaagcatatatatatac
ccaccttccacttaccacatgtgacagatccagaggcaattgaatcaata
caagagactggaggcaggttccc
gaattcattctgtagaccaggcttgcccaaactctcagatccaactgcct
ctgcagtctgtgtgctaggatcaaagatatgagccactatcacctagcca
aaaaaaaatttttttaattttaattttatgtatatgtgtgtggtatgagc
atatgaggtgtgagtgcaagtgcccatgaagtccagaatgggggtttggg
tcccctggagctgcagttacagcttgctgtgatctgcctgacatgggtgc
ttagaactgaactcaggtctcctgtgagagtagtacactgactgacttaa
ccaccgactgagccgtcttcccagagccgtcttcccagcccctgttgttt
gttttttgagatgatcttgttaggtacttcccaggttatgtatttcttga
gctttttatagtatccagcggtttttctatctcagcctcttgagtagttg
ggagtacatgtgtgtgtcaccatgcccctgtttacttaatttttgctgtt
gggtttggttatttatttaattaattatttatttatttttgagacaaggt
ctctgtctagctttggtgattctcgaactctctgtataagccagggtggc
cttgagctcacagagatgtctccacctctgcctcttcatgcagggattaa
agatttatatatgggtgtttttgtctagatagttttttgggttacgtatg
tgtacctactgcctgccaccagagacctgaaagagtgttgaatttcctaa
agtataagtagttgtgagccacccagggaatgctgggaatcaagattttt
tttttaagtgatttctttttaaagatttattttattgtatatgagtacac
tgtagctgttttctacacaccagaagagggcattgggatcccatttatac
atggtcatgggccaccatgtgttgctgggaattgaactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133519500_133520626
seq2: B6Ng01-137N20.b_49_1171

seq1  GAATTCTAGGTCAGCCATGGCTGTGCAAAGAAATGGTGTCTGGGGATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTCAGCCATGGCTGTGCAAAGAAATGGTGTCTGGGGATAGG  50

seq1  TGGGGCGCAGGGAGGGAGCTGAGACTGGTTACAGCAGGTCCTGAGTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGCAGGGAGGGAGCTGAGACTGGTTACAGCAGGTCCTGAGTTGGT  100

seq1  AAGAGTTCACTATTAAGAATTTTTGTCTACATGTCTGTGCACCACATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCACTATTAAGAATTTTTGTCTACATGTCTGTGCACCACATGTG  150

seq1  CGCCTGGTACACAGACAGTCAGAACTAGAGTTAAAAATACCAGGGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGTACACAGACAGTCAGAACTAGAGTTAAAAATACCAGGGGTTAG  200

seq1  CCGGTCATGTGTGAGCTAGCAACTTCTGTAAGTCACTAAGTCACCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCATGTGTGAGCTAGCAACTTCTGTAAGTCACTAAGTCACCACTGA  250

seq1  GCCATGCATCAATGCCCCAGAAGGGTCTGTTTTTGGTGCTGAAATGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCATCAATGCCCCAGAAGGGTCTGTTTTTGGTGCTGAAATGGTTT  300

seq1  TGATGTGGCCAAATTTGGTCTTGGACCTGCATAGTTTAGGATGAACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGGCCAAATTTGGTCTTGGACCTGCATAGTTTAGGATGAACTTGA  350

seq1  ACTTTGGCCTTGACTAAGCCTCCCAAGTGTAGTGGGGCTACAGTATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCCTTGACTAAGCCTCCCAAGTGTAGTGGGGCTACAGTATAATA  400

seq1  GTATAAAAGTACAGCAGGTGGCACATGGCTGTGTCTGCTTTAGTAGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAGTACAGCAGGTGGCACATGGCTGTGTCTGCTTTAGTAGATCC  450

seq1  AACAAAGCAGATGCTAAACCGGCCAATCTATGGGAATAGAGATCAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCAGATGCTAAACCGGCCAATCTATGGGAATAGAGATCAAAGTT  500

seq1  GAAGCTCAACACACTTATCCCATTATTTGGCAACAGTGACCTGCAACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAACACACTTATCCCATTATTTGGCAACAGTGACCTGCAACTGG  550

seq1  GAAAACTACCTGCCATGACACATGGCGGCAATGTCTACTTGGTAACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTACCTGCCATGACACATGGCGGCAATGTCTACTTGGTAACTGGC  600

seq1  CCAGAGACTGCCACAGCTCATGGAAGAACTGCATGCAGTCCATGGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTGCCACAGCTCATGGAAGAACTGCATGCAGTCCATGGTTAAA  650

seq1  CGATATTTACAATCTGAAGAATGGTACTGAACCCAATTATAGCTTCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATTTACAATCTGAAGAATGGTACTGAACCCAATTATAGCTTCAAGT  700

seq1  TTTGCTCAAGCACCAACCTGCTAACCATAACCACAGGCTCCCCTCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAAGCACCAACCTGCTAACCATAACCACAGGCTCCCCTCTCTGG  750

seq1  AACTGTCCCCAAAGTCAGAGTGAATGTCCCCAAGGTACAGGTCCAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCCCAAAGTCAGAGTGAATGTCCCCAAGGTACAGGTCCAACATT  800

seq1  CTTTTCTTAAGATTCAATATATGAGTACACTGTTCCCACCGTCTCAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTAAGATTCAATATATGAGTACACTGTTCCCACCGTCTCAGACA  850

seq1  GAAAACCCATCCCAAAGCTTTAAGAAGTTAACTGTTAGCTTGACCTTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCATCCCAAAGCTTTAAGAAGTTAACTGTTAGCTTGACCTTGAT  900

seq1  ACAAGAACACTGCCCCAAGAAAGGCCAACAGCACTCTAGTCGGTCTAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACACTGCCCCAAGAAAGGCCAACAGCACTCTAGTCGGTCTAGGT  950

seq1  GTCCGCACCAAACTT-GGCCTGCCAATCAATCTCTACACGTCCTTGAAGA  999
      ||| ||||||||||| |||||| |||||||||||||||||| || || ||
seq2  GTCGGCACCAAACTTGGGCCTG-CAATCAATCTCTACACGT-CTGGAGGA  998

seq1  ACCATTTCCCAAACCCACTCCCCAGTCTATTTCTGGGAAGCATATATATA  1049
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCATTTCCCAAACCCACTCCCCAGT-TATTTCTGGGAAGCATATATATA  1047

seq1  TACCCACC-TCCACTTACCACCATGTGACCAGATCCAAGAGCAA-TGGAT  1097
      |||||||| ||||||||||| ||||||| ||||||||   |||| || ||
seq2  TACCCACCTTCCACTTACCA-CATGTGA-CAGATCCAGAGGCAATTGAAT  1095

seq1  CAATACAAGAGACCTGGAAGGCAGGTTCCC  1127
      |||||||||||| |||| ||||||||||||
seq2  CAATACAAGAGA-CTGG-AGGCAGGTTCCC  1123

seq1: chr1_173898135_173898256
seq2: B6Ng01-137N20.g_594_1010

seq1  --------------------------------------------------  0
                                                        
seq2  TTATTTATTTATTTTTGAGACAAGGTCTCTGTCTAGCTTTGGTGATTCTC  50

seq1  --------------------------------------------------  0
                                                        
seq2  GAACTCTCTGTATAAGCCAGGGTGGCCTTGAGCTCACAGAGATGTCTCCA  100

seq1  --------------------------------------------------  0
                                                        
seq2  CCTCTGCCTCTTCATGCAGGGATTAAAGATTTATATATGGGTGTTTTTGT  150

seq1  --------------------------------------------------  0
                                                        
seq2  CTAGATAGTTTTTTGGGTTACGTATGTGTACCTACTGCCTGCCACCAGAG  200

seq1  --------------------------------------------------  0
                                                        
seq2  ACCTGAAAGAGTGTTGAATTTCCTAAAGTATAAGTAGTTGTGAGCCACCC  250

seq1  --------------------------------------TTATTT------  6
                                            || |||      
seq2  AGGGAATGCTGGGAATCAAGATTTTTTTTTTAAGTGATTTCTTTTTAAAG  300

seq1  ATTTATTTTA-TGTATGTGAGTACACCATTGCTCTCTTCAGACACACCAG  55
      |||||||||| ||||| |||||||||  | ||| | |||  |||||||||
seq2  ATTTATTTTATTGTATATGAGTACACTGTAGCTGTTTTC-TACACACCAG  349

seq1  AAGAGGG-AATCAGACCCCA-TTACAGATGGTTGTGAGCCACCATGTGGT  103
      ||||||| | |  || |||| ||| | |||||  || |||||||||| ||
seq2  AAGAGGGCATTGGGATCCCATTTATACATGGTCATGGGCCACCATGT-GT  398

seq1  TGCTGGGAATTGAACTCAG  122
      |||||||||||||||||||
seq2  TGCTGGGAATTGAACTCAG  417