BAC Information

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BAC

Clone NameB6Ng01-137P11
Chromosome4 (Build37)
Map Location 9,212,574 - 9,375,494
singlet/doubletdoublet
Overlap gene4933402J24Rik
Upstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584
Downstream geneAsph, Gdf6, 4930448K20Rik, LOC666840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137P11.bB6Ng01-137P11.g
ACCDH937346DH937347
length1,1641,103
definitionDH937346|Mus musculus domesticus DNA, BAC clone: B6Ng01-137P11, 5' end.DH937347|Mus musculus domesticus DNA, BAC clone: B6Ng01-137P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,212,574 - 9,213,733)(9,374,398 - 9,375,494)
sequence
ggtcttgctcagagatggaggctccaacagcagaaatctgtgtggtttcc
gagttttctgcagctgccaggctgagctgaatgagttaaacacaaaagaa
ccacatactcattcataaagtaagcatggccagcacttccagagccagca
gagttgttattctagtgtacccgcttcatatgcattgggacacaagttga
cacccttactcagtgattcctctgatcataacttatctcacagcagcatc
agcaagacttcacaatctgcccctttaagatccctaaagaaaatccattg
cttgcctgtgttttctgagctgcaaatttgcatgtgagtctttgctgtca
ggactctggtgctgcagagagagagacaagcacagaggcacgtgtgtatt
tatttctggattccacttcagtcgaaaccaaaagttaagctcgggtcccg
ttgttttgctgtttggagtcccagtttctcaagtggaaactgtataagac
atccggcctgtcaggctgctgctaggacaaacacaatcttggtagagtcc
cagaggcagaagggattgaatgatgaattctgaagtcaggtggccacctt
taattccagcagcctcctgaaagtcccatgccttaagatgtagttgaaat
cctatcatgcagtctctcacctgtaaagtaggagtggtgacctgaggttt
acactggttgatgcacagaagtacttctttcttaagaataaataagccaa
gcaggtaaagaactgggataccaggtcaaaagatactttctaaacactga
aacctttgatcaaattatcaacatttttccacttgggaaattgtaaaaac
aataactatgacagatcataactccaaaatatattgggctggaaggctct
gtattcttatatatcttgggttaaaggcctcttcctattgttggtcataa
ggttgtaagaacaacaaccatgggactcctgacacacaagtccttaacac
accatatcacatcacagtactatgtgcagacagctgtttcacccaagttt
tgaatggggacacaacagaggaacaagtccagaaagtgcggaaagaagaa
gacaattctcatcaatcattacctctaatatcgaatcatcaagcaaggtc
gatatcagcaagca

gaattctgtggaaataaaagagcctggtagcaatcaactattgaaagttt
gaactgcacttctttctgacagataaaccaactttattacacaaagcagc
cccttgcccgcctggagtctgggtgaggtctaggtgctcaccggcattgt
tcatgcacctcttcttgaagacggccaactcgagaagcttgctcctctgt
gacccagaagatcaacctttcaaggatcgtttttcacattgaactcaaac
ctggttttgaagacacatgtgtcctgtctttgcttccttctcccagagct
acaggatcctgccatttctctctctgcctgtggggttgggtcccaggacc
cttctagatatcagaatcagcagaagttcaagttcttatattagggtgca
gtatctgcatagactcagtgctcactctcctgtaatgcctaatataaagt
acatattttattatttagggaattactacaagaagtgaagtgagcccatt
cattggttggatctctagtgtataacctctgtctgcggagggctgagcag
acacaatcccttcagagtctgctttgaagccttgttttagtgcaaggtct
ttcctccctaactactccagttgggccacgatttctagatttttccacca
tcagccaggtggttattcacagtattcatggtgtggccttgagtgaaatg
attatctgtcggttggggttatcaagagccgtattctcttcctggcatca
gtgtacagcagactattcttaaaaatgatgctgtttacccagttcctttc
ctgccttgaaagttctattcaaaaaccctcaggtggagaaacaatatcat
cttttttaaacttgcttcatgtatctcaacttgtcttcattcttttagat
cttaaaataatttaggcagtcaagtaattacctctgacttaatgaactat
gggatttatatttaactttcttattctaccattatggatatgatgaaaat
caggttgctcctcatatttccaatcctgaatgactgaagctaatgaggtt
ggtgaagcttttgctctaaacacattctctttgagcaatggtgcagaaac
ctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9212574_9213733
seq2: B6Ng01-137P11.b_58_1221

seq1  GGTCTTGCTCAGAGATGGAGGCTCCAACAGCAGAAATCTGTGTGGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCTCAGAGATGGAGGCTCCAACAGCAGAAATCTGTGTGGTTTCC  50

seq1  GAGTTTTCTGCAGCTGCCAGGCTGAGCTGAATGAGTTAAACACAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCTGCAGCTGCCAGGCTGAGCTGAATGAGTTAAACACAAAAGAA  100

seq1  CCACATACTCATTCATAAAGTAAGCATGGCCAGCACTTCCAGAGCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACTCATTCATAAAGTAAGCATGGCCAGCACTTCCAGAGCCAGCA  150

seq1  GAGTTGTTATTCTAGTGTACCCGCTTCATATGCATTGGGACACAAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTATTCTAGTGTACCCGCTTCATATGCATTGGGACACAAGTTGA  200

seq1  CACCCTTACTCAGTGATTCCTCTGATCATAACTTATCTCACAGCAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTACTCAGTGATTCCTCTGATCATAACTTATCTCACAGCAGCATC  250

seq1  AGCAAGACTTCACAATCTGCCCCTTTAAGATCCCTAAAGAAAATCCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACTTCACAATCTGCCCCTTTAAGATCCCTAAAGAAAATCCATTG  300

seq1  CTTGCCTGTGTTTTCTGAGCTGCAAATTTGCATGTGAGTCTTTGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGTGTTTTCTGAGCTGCAAATTTGCATGTGAGTCTTTGCTGTCA  350

seq1  GGACTCTGGTGCTGCAGAGAGAGAGACAAGCACAGAGGCACGTGTGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGGTGCTGCAGAGAGAGAGACAAGCACAGAGGCACGTGTGTATT  400

seq1  TATTTCTGGATTCCACTTCAGTCGAAACCAAAAGTTAAGCTCGGGTCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGATTCCACTTCAGTCGAAACCAAAAGTTAAGCTCGGGTCCCG  450

seq1  TTGTTTTGCTGTTTGGAGTCCCAGTTTCTCAAGTGGAAACTGTATAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTGTTTGGAGTCCCAGTTTCTCAAGTGGAAACTGTATAAGAC  500

seq1  ATCCGGCCTGTCAGGCTGCTGCTAGGACAAACACAATCTTGGTAGAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGCCTGTCAGGCTGCTGCTAGGACAAACACAATCTTGGTAGAGTCC  550

seq1  CAGAGGCAGAAGGGATTGAATGATGAATTCTGAAGTCAGGTGGCCACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGAAGGGATTGAATGATGAATTCTGAAGTCAGGTGGCCACCTT  600

seq1  TAATTCCAGCAGCCTCCTGAAAGTCCCATGCCTTAAGATGTAGTTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCAGCAGCCTCCTGAAAGTCCCATGCCTTAAGATGTAGTTGAAAT  650

seq1  CCTATCATGCAGTCTCTCACCTGTAAAGTAGGAGTGGTGACCTGAGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCATGCAGTCTCTCACCTGTAAAGTAGGAGTGGTGACCTGAGGTTT  700

seq1  ACACTGGTTGATGCACAGAAGTACTTCTTTCTTAAGAATAAATAAGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTTGATGCACAGAAGTACTTCTTTCTTAAGAATAAATAAGCCAA  750

seq1  GCAGGTAAAGAACTGGGATACCAGGTCAAAAGATACTTTCTAAACACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAAAGAACTGGGATACCAGGTCAAAAGATACTTTCTAAACACTGA  800

seq1  AACCTTTGATCAAATTATCAACATTTTTCCACTTGGGAAATTGTAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGATCAAATTATCAACATTTTTCCACTTGGGAAATTGTAAAAAC  850

seq1  AATAACTATGACAGATCATAACTCCAAAATTATATTGGGCTGGAAGGCTC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATAACTATGACAGATCATAACTCCAAAA-TATATTGGGCTGGAAGGCTC  899

seq1  TGTTATTCTTATATA-CCTGGTTTAAAGGCCTCTTCCTATTGTTGGTCAT  949
      || |||||||||||| | ||| ||||||||||||||||||||||||||||
seq2  TG-TATTCTTATATATCTTGGGTTAAAGGCCTCTTCCTATTGTTGGTCAT  948

seq1  -AGGTTGTAAGAACAACAACCAGGGGACTCCTGACACACAAGTCCTTTAA  998
       ||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  AAGGTTGTAAGAACAACAACCATGGGACTCCTGACACACAAGTCC-TTAA  997

seq1  CACACCATAATCACATCCACAGTACTATGTGCAGACCAGCTGTTTCCACC  1048
      |||||||| ||||||| |||||||||||||||||| ||||||||||   |
seq2  CACACCAT-ATCACAT-CACAGTACTATGTGCAGA-CAGCTGTTTC--AC  1042

seq1  CCAAGTTTTGAATGGGGGACCACAACAGAGGAACAAGT-CAGAAAGTGCG  1097
      |||||||||||||||||   |||||||||||||||||| |||||||||||
seq2  CCAAGTTTTGAATGGGG--ACACAACAGAGGAACAAGTCCAGAAAGTGCG  1090

seq1  GAGAGATAGAGAACATTCTTCCATCAATATCATTACCTCTCACAT-----  1142
      || |||   |||  |||||  |||||  |||||||||||| | ||     
seq2  GAAAGAAGAAGACAATTCT--CATCA--ATCATTACCTCTAATATCGAAT  1136

seq1  -ATCA---------GATATCAGCAAGCA  1160
       ||||         ||||||||||||||
seq2  CATCAAGCAAGGTCGATATCAGCAAGCA  1164


seq1: chr4_9374398_9375494
seq2: B6Ng01-137P11.g_68_1170 (reverse)

seq1  AAGGTTTCTGCACATTTGCTCATAGAGATTG-GTATAGAGC-AAAGCTTC  48
      |||||||||||||  ||||||| ||||| || || |||||| ||||||||
seq2  AAGGTTTCTGCACCATTGCTCAAAGAGAATGTGTTTAGAGCAAAAGCTTC  50

seq1  ACAAACATCAATTAGCCTCAGTCA-TCAGGTTTGAAAATATTGAGAGCCA  97
      || ||| || |||||| ||||||| ||||| ||| ||||||   |||| |
seq2  ACCAACCTC-ATTAGCTTCAGTCATTCAGGATTGGAAATATGAGGAGCAA  99

seq1  CCTGATTTTCA--CTAATCATAATGTGAG-ATAGGAAAGTTTAAATATAA  144
      |||||||||||   ||  |||||||  || ||| ||||| ||||||||||
seq2  CCTGATTTTCATCATATCCATAATGGTAGAATAAGAAAG-TTAAATATAA  148

seq1  ATCCAATAG-TCATTAAAGTCAGAGGTAATAACTTGGACTGCCTAAA-TA  192
      |||| |||| ||||| |||||||||||||| |||| ||||||||||| ||
seq2  ATCCCATAGTTCATT-AAGTCAGAGGTAATTACTT-GACTGCCTAAATTA  196

seq1  TTTTAAGATCTAAAAGAATGGAGACAAGTTG-GATACATGAAGCAAGTTT  241
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  TTTTAAGATCTAAAAGAATGAAGACAAGTTGAGATACATGAAGCAAGTTT  246

seq1  -AAAAAGATGATATTTGTTTCTCAACCTGAAGGTTTTTGAATAGAACTTT  290
       |||||||||||| ||||||||| |||||| |||||||||||||||||||
seq2  AAAAAAGATGATA-TTGTTTCTCCACCTGAGGGTTTTTGAATAGAACTTT  295

seq1  CAAGGCAGG-AAGGAACTGGGTAAACAGCATCATTTTTAAGAATAGTCTG  339
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGAAAGGAACTGGGTAAACAGCATCATTTTTAAGAATAGTCTG  345

seq1  CTGTACACTGATGCCAGGAAGGAGAATACGGCTCTTGATAACCCCAACCG  389
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGTACACTGATGCCAGGAA-GAGAATACGGCTCTTGATAACCCCAACCG  394

seq1  ACAGATAATCATTTCACTCAAGGCCACACCATGAATACTGTGAATAACCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATCATTTCACTCAAGGCCACACCATGAATACTGTGAATAACCA  444

seq1  CCTGGCTGATGGTGGAAAAATCTAGAAATCGTGGCCCAACTGGAGTAGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGATGGTGGAAAAATCTAGAAATCGTGGCCCAACTGGAGTAGTT  494

seq1  AGGGAGG-AAGACCTTGCACTAAAACAAGGCTTCAAAGCAGACTCTGAAG  538
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAAAGACCTTGCACTAAAACAAGGCTTCAAAGCAGACTCTGAAG  544

seq1  GGATTGTGTCTGCTCAGCCCTCCGCAGACAGAGGTTATACACTAGAGATC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGTCTGCTCAGCCCTCCGCAGACAGAGGTTATACACTAGAGATC  594

seq1  CAACCAATGAATGGGCTCACTTCACTTCTTGTAGTAATTCCCTAAATAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATGAATGGGCTCACTTCACTTCTTGTAGTAATTCCCTAAATAAT  644

seq1  AAAATATGTACTTTATATTAGGCATTACAGGAGAGTGAGCACTGAGTCTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTACTTTATATTAGGCATTACAGGAGAGTGAGCACTGAGTCTA  694

seq1  TGCAGATACTGCACCCTAATATAAGAACTTGAACTTCTGCTGATTCTGAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATACTGCACCCTAATATAAGAACTTGAACTTCTGCTGATTCTGAT  744

seq1  ATCTAGAAGGGTCCTGGGACCCAACCCCACAGGCAGAGAGAGAAATGGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAGGGTCCTGGGACCCAACCCCACAGGCAGAGAGAGAAATGGCA  794

seq1  GGATCCTGTAGCTCTGGGAGAAGGAAGCAAAGACAGGACACATGTGTCTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGTAGCTCTGGGAGAAGGAAGCAAAGACAGGACACATGTGTCTT  844

seq1  CAAAACCAGGTTTGAGTTCAATGTGAAAAACGATCCTTGAAAGGTTGATC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAGGTTTGAGTTCAATGTGAAAAACGATCCTTGAAAGGTTGATC  894

seq1  TTCTGGGTCACAGAGGAGCAAGCTTCTCGAGTTGGCCGTCTTCAAGAAGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTCACAGAGGAGCAAGCTTCTCGAGTTGGCCGTCTTCAAGAAGA  944

seq1  GGTGCATGAACAATGCCGGTGAGCACCTAGACCTCACCCAGACTCCAGGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGAACAATGCCGGTGAGCACCTAGACCTCACCCAGACTCCAGGC  994

seq1  GGGCAAGGGGCTGCTTTGTGTAATAAAGTTGGTTTATCTGTCAGAAAGAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGGGCTGCTTTGTGTAATAAAGTTGGTTTATCTGTCAGAAAGAA  1044

seq1  GTGCAGTTCAAACTTTCAATAGTTGATTGCTACCAGGCTCTTTTATTTCC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTTCAAACTTTCAATAGTTGATTGCTACCAGGCTCTTTTATTTCC  1094

seq1  ACAGAATTC  1097
      |||||||||
seq2  ACAGAATTC  1103


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