BAC Information

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BAC

Clone NameB6Ng01-138B24
Chromosome4 (Build37)
Map Location 28,014,694 - 28,150,029
singlet/doubletdoublet
Overlap geneLOC100040842
Upstream geneLOC100040691, Tpm3-rs2
Downstream geneLOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138B24.bB6Ng01-138B24.g
ACCDH937468DH937469
length1,0981,118
definitionDH937468|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B24, 5' end.DH937469|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,148,915 - 28,150,029)(28,014,694 - 28,015,837)
sequence
gaattcttccatgcacttttatacctactatagagctgctttactagtat
gaggcagtttcaattgcttctagcataatgaatgaaagtatgtgttaaaa
taattttgactaataacctaaactagaacatccacaaaaattgctcaaga
gactgattcagtgtcttccacagttctcatctttaacatgaactgtccct
gaatatctgtttgtctatctatctatctatctatctatctatctatctat
ctatctatctatctatctatctcatttatatatttatttatttacatttt
tggtagtctgacattcactaaaatattttaatgaaggtaccaggtataca
ttataatgtctgtttgaaaattgaagtctcttcactagtggaatttcttc
tccagaagacattgcctagagtaaatataacatggtttccaatgctgttg
tccatctaattttgtgtaaaaagagtaataatggaatcctccacttaagt
ttgtgaattaagcaaatatcatttattataataaaatcaaccaaatattc
tataacttcaattgaactatcaaagttttcctttaatatcaaagcatatg
ttccatataccagcaaatataaaactttatattcctaaacatagatcaat
gtattctaccactattgctaagtctcccatcttgtaaaccccctgccccc
aacctgaagcttgctaaacagacctcgattttactgccactaaggagatt
atctagggtggagcctacctctctagatcactctatcattcagccattgt
cgctgttctgttctgttctctgttcctcttcaagatactgctacctgctg
agaggccccagatctattctgagactacatccttttctgcatgtggtcac
ctgcagctgggctccaaggatgatttggcaggaatgggcttcccctcctt
tataaagctgtctgccattaaaaatttgagccttacacatggagtactac
tcagctattaaaagatgatttatgaaatctaggcaatgatggactggagg
catcatctggagtgaggtaccatcacaaagactcaatgaattgtactc
gaattcagttttgtagtttttttagaaaattggacgtagtactacttgag
gaccaagtaatactactcctgggcatatacccagaagatgttccaactgg
taataaggacacatgctccactgtgttcatagcagccttatctataatag
ccagaagctggaaagaacccaaatgtccctaaacaaaggatggatacaga
aaatgtggtacatttacacaatggagtactactcagctattaaaaacaat
caatctatgaaatttgtaggcaaatggatggatctggagtatatcatcct
gagtgaggtaacccaatcacataataactcacatgatttgtactcactga
taatatcataatatttatgataattttttaacttttcaaaaatatacctg
ctcccaaataaacaatgcagatactattgtgaaagaattgcatcactttt
aaggtttctctctctctctctccctctctctctctctctttcaatctttc
attctttatttcttagttggtttattgatttatttaagagtttttgtgtg
tgtgcatgtgttgtatttgtgtgtacatgtgatgcttttgtgaatgtaca
tgtgccatggaggttcaccatgcaggttccattatgaaattcaggttatc
atgcttggcagcaagcaagtttccctattaagacacattatcagctccca
agagtatagtatgtccattcaagtttcagatttacaaagaaatataagta
agaaaatagatagtgtggaaagtatatattaaagtataatcaacggcaag
tgtttaaccatgagagaacattgtatttgattaatccaatgaaagtcggt
attgatgtacttattattatgtttaataactttctctgtagtaaatagca
atgggatagttcagttggctatagatctaatattggaaatcttagtaaac
atgaacccaacattcatagtgatttcaaattttattaaaattataataaa
gcatgtttagcaactgtaaaatttagatattatgataaattgcttaatga
atttaagggagtagctaaacgctattaaattaaatagctaattcttaatg
attagaagaacaccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28148915_28150029
seq2: B6Ng01-138B24.b_45_1142 (reverse)

seq1  GAGTACATATCATTTGAGTTCTTTTGTGATTGTGTTACCTCACTCAGGAT  50
      |||||||  ||| ||||||   |||||||   || ||||||||||  |||
seq2  GAGTACAATTCA-TTGAGT--CTTTGTGA---TGGTACCTCACTCCAGAT  44

seq1  GATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCT  100
      |||| |||||| |||||||   ||||||||  |||||||||| ||||   
seq2  GATG-CCTCCA-GTCCATC--ATTGCCTAG--ATTTCATAAA-TCAT--C  85

seq1  TTTTAATAGCTGAGTAGTACTCCATTGTGTAAGGCTCAAATTTTTAATGG  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTAATAGCTGAGTAGTACTCCA-TGTGTAAGGCTCAAATTTTTAATGG  134

seq1  CAGACAGGCTTTATAAAGGAGGGGAAGCCCATTCCTGCCAAATCATCCTT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACA-GCTTTATAAAGGAGGGGAAGCCCATTCCTGCCAAATCATCCTT  183

seq1  GGAGCCCAGCTGCAGGTGACCACATGCAGAAAAGGATGTAGTCTCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGCTGCAGGTGACCACATGCAGAAAAGGATGTAGTCTCAGAAT  233

seq1  AGATCTGGGGCCTCTCAGCAGGTAGCAGTATCTTGAAGAGGAACAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGGGGCCTCTCAGCAGGTAGCAGTATCTTGAAGAGGAACAGAGAA  283

seq1  CAGAACAGAACAGCGACAATGGCTGAATGATAGAGTGATCTAGAGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGAACAGCGACAATGGCTGAATGATAGAGTGATCTAGAGAGGTA  333

seq1  GGCTCCACCCTAGATAATCTCCTTAGTGGCAGTAAAATCGAGGTCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCACCCTAGATAATCTCCTTAGTGGCAGTAAAATCGAGGTCTGTTT  383

seq1  AGCAAGCTTCAGGTTGGGGGCAGGGGGTTTACAAGATGGGAGACTTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTTCAGGTTGGGGGCAGGGGGTTTACAAGATGGGAGACTTAGCA  433

seq1  ATAGTGGTAGAATACATTGATCTATGTTTAGGAATATAAAGTTTTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGTAGAATACATTGATCTATGTTTAGGAATATAAAGTTTTATATT  483

seq1  TGCTGGTATATGGAACATATGCTTTGATATTAAAGGAAAACTTTGATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTATATGGAACATATGCTTTGATATTAAAGGAAAACTTTGATAGT  533

seq1  TCAATTGAAGTTATAGAATATTTGGTTGATTTTATTATAATAAATGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGAAGTTATAGAATATTTGGTTGATTTTATTATAATAAATGATAT  583

seq1  TTGCTTAATTCACAAACTTAAGTGGAGGATTCCATTATTACTCTTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAATTCACAAACTTAAGTGGAGGATTCCATTATTACTCTTTTTAC  633

seq1  ACAAAATTAGATGGACAACAGCATTGGAAACCATGTTATATTTACTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAGATGGACAACAGCATTGGAAACCATGTTATATTTACTCTAG  683

seq1  GCAATGTCTTCTGGAGAAGAAATTCCACTAGTGAAGAGACTTCAATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTCTTCTGGAGAAGAAATTCCACTAGTGAAGAGACTTCAATTTTC  733

seq1  AAACAGACATTATAATGTATACCTGGTACCTTCATTAAAATATTTTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACATTATAATGTATACCTGGTACCTTCATTAAAATATTTTAGTG  783

seq1  AATGTCAGACTACCAAAAATGTAAATAAATAAATATATAAATGAGATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGACTACCAAAAATGTAAATAAATAAATATATAAATGAGATAGA  833

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  883

seq1  GACAAACAGATATTCAGGGACAGTTCATGTTAAAGATGAGAACTGTGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAGATATTCAGGGACAGTTCATGTTAAAGATGAGAACTGTGGAA  933

seq1  GACACTGAATCAGTCTCTTGAGCAATTTTTGTGGATGTTCTAGTTTAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAATCAGTCTCTTGAGCAATTTTTGTGGATGTTCTAGTTTAGGT  983

seq1  TATTAGTCAAAATTATTTTAACACATACTTTCATTCATTATGCTAGAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTCAAAATTATTTTAACACATACTTTCATTCATTATGCTAGAAGC  1033

seq1  AATTGAAACTGCCTCATACTAGTAAAGCAGCTCTATAGTAGGTATAAAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAACTGCCTCATACTAGTAAAGCAGCTCTATAGTAGGTATAAAAG  1083

seq1  TGCATGGAAGAATTC  1115
      |||||||||||||||
seq2  TGCATGGAAGAATTC  1098

seq1: chr4_28014694_28015837
seq2: B6Ng01-138B24.g_67_1184

seq1  GAATTCAGTTTTGTAGTTTTTTTAGAAAATTGGACGTAGTACTACTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTGTAGTTTTTTTAGAAAATTGGACGTAGTACTACTTGAG  50

seq1  GACCAAGTAATACTACTCCTGGGCATATACCCAGAAGATGTTCCAACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAATACTACTCCTGGGCATATACCCAGAAGATGTTCCAACTGG  100

seq1  TAATAAGGACACATGCTCCACTGTGTTCATAGCAGCCTTATCTATAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGACACATGCTCCACTGTGTTCATAGCAGCCTTATCTATAATAG  150

seq1  CCAGAAGCTGGAAAGAACCCAAATGTCCCTAAACAAAGGATGGATACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTGGAAAGAACCCAAATGTCCCTAAACAAAGGATGGATACAGA  200

seq1  AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAAT  250

seq1  CAATCTATGAAATTTGTAGGCAAATGGATGGATCTGGAGTATATCATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATGAAATTTGTAGGCAAATGGATGGATCTGGAGTATATCATCCT  300

seq1  GAGTGAGGTAACCCAATCACATAATAACTCACATGATTTGTACTCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTAACCCAATCACATAATAACTCACATGATTTGTACTCACTGA  350

seq1  TAATATCATAATATTTATGATAATTTTTTAACTTTTCAAAAATATACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATAATATTTATGATAATTTTTTAACTTTTCAAAAATATACCTG  400

seq1  CTCCCAAATAAACAATGCAGATACTATTGTGAAAGAATTGCATCACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATAAACAATGCAGATACTATTGTGAAAGAATTGCATCACTTTT  450

seq1  AAGGTTTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTTTCAATCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTTTCAATCTTTC  500

seq1  ATTCTTTATTTCTTAGTTGGTTTATTGATTTATTTAAGAGTTTTTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATTTCTTAGTTGGTTTATTGATTTATTTAAGAGTTTTTGTGTG  550

seq1  TGTGCATGTGTTGTATTTGTGTGTACATGTGATGCTTTTGTGAATGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGTTGTATTTGTGTGTACATGTGATGCTTTTGTGAATGTACA  600

seq1  TGTGCCATGGAGGTTCACCATGCAGGTTCCATTATGAAATTCAGGTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATGGAGGTTCACCATGCAGGTTCCATTATGAAATTCAGGTTATC  650

seq1  ATGCTTGGCAGCAAGCAAGTTTCCCTATTAAGACACATTATCAGCTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGCAGCAAGCAAGTTTCCCTATTAAGACACATTATCAGCTCCCA  700

seq1  AGAGTATAGTATGTCCATTCAAGTTTCAGATTTACAAAGAAATATAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATAGTATGTCCATTCAAGTTTCAGATTTACAAAGAAATATAAGTA  750

seq1  AGAAAATAGATAGTGTGGAAAGTATATATTAAAGTATAATCAACGGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAGATAGTGTGGAAAGTATATATTAAAGTATAATCAACGGCAAG  800

seq1  TGTTTAACCATGAGAGAACATTGTATTTGATTAATCCAATGAAAGTCGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAACCATGAGAGAACATTGTATTTGATTAATCCAATGAAAGTCGGT  850

seq1  ATTGATGTACTTATTATTATGTTTAATAACTTTCTCTGTAGTAAATAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTACTTATTATTATGTTTAATAACTTTCTCTGTAGTAAATAGCA  900

seq1  ATGGGATAAGTTCAGTTGGCTATAAGGATCTAATAATGGAAAATCTTAGT  950
      ||||||| ||||||||||||||||  ||||||||| ||| ||||||||||
seq2  ATGGGAT-AGTTCAGTTGGCTATA--GATCTAATATTGG-AAATCTTAGT  946

seq1  AAACATGAACCCAAACATTTTCATAGGTGAATTTCAAATTTTTATTAAAA  1000
      |||||||||||| ||||  |||||| ||| |||||||| |||||||||||
seq2  AAACATGAACCC-AACA--TTCATA-GTG-ATTTCAAA-TTTTATTAAAA  990

seq1  -TATAATAAAGCATGTTTAGC-ACTGTAAAAAATTAGATATTATGATTAA  1048
       |||||||||||||||||||| ||||| |||| ||||||||||||||  |
seq2  TTATAATAAAGCATGTTTAGCAACTGT-AAAATTTAGATATTATGAT--A  1037

seq1  ATTTGCTTTAATGAAAATTTATAGGAGTAGCTAAACACCATAATAAAATT  1098
      | |||| ||||||  ||||||  ||||||||||||| |    || |||||
seq2  AATTGC-TTAATG--AATTTAAGGGAGTAGCTAAACGC---TATTAAATT  1081

seq1  AATATAGCTAAATACCTTAATGAAATTAAGAAAGAACACACCATGT  1144
      || |||||||| |  |||||||  ||||   ||||  |||||||||
seq2  AA-ATAGCTAATT--CTTAATG--ATTA--GAAGA--ACACCATGT  1118