BAC Information

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BAC

Clone NameB6Ng01-138G23
Chromosome4 (Build37)
Map Location 90,524,570 - 90,584,791
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
Downstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138G23.bB6Ng01-138G23.g
ACCDH937697DH937698
length9931,009
definitionDH937697|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G23, 5' end.DH937698|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,524,570 - 90,525,556)(90,583,760 - 90,584,791)
sequence
gaattcaacaaatgcaaggttggcataatataaaagcaattgtgaaaatt
tctacataaaagtaataaatggcataaatacacaattatctgagtaggaa
aaagttgatacccacacaagaataaaagctccattgtgtaaagggtatgc
atagaacaatctatgattagtactctatttcttgatgaaagactgaatat
gtcccttgacactgggtataggtaaatactctcaacacttctagtcaatg
tactatggcagcataagaaaactaagggaatctaccttataaagaaagag
cagatactatatctgtgactacaatatgcaacattcccacatgaatccac
atcttcataaaggtactacaagtaagaaaagacctcatcatggtcaatat
accgaaggtgaatacatagatttaatatgtatcctgtatgaaatataaga
aactctgttcccaaaaagcttccaaaggggcaaagagttaaatccaataa
aagatttacaagggactggagagatggctctctgactgctcttccagagt
tcttgagttcaattctcagcacccacaatggtggcatataactatctgta
atgggatccgataccctcttctggggtgtgaagacagctacagtgtaatt
atacataaaataaataatttttttaaaaaaagcattacagtcttatatag
aaaactaaaaaattgttcacaagaaagaaaaatatttaaatgaatgaaat
acattcatattcaatcttggctaaaattcccctcaatctataagttcaga
gaagttgctagcaaaatgaagaggtggaaatttttatagaaatttgaaag
atgtttctaaagtttatcttgaaatacaattttcaaaaactaactaaact
cattgtgggaaaagtaacaaattaagagtgttcatgtgtccattcaaatt
tatgtaattatacaggaatcaaaacagtggagacctgggtgtg
gaattcaaatgaaatgtgcttgtttcttctttttcattcttcatagccta
tttatcactggttccctgctctatttgaatgtagcttggcttcacttgta
ccctaaaattatgttgtctcctttattggtcctgacagtcaagtagctgg
tgagggagcatctgcctcccaatttcccatctctgtgggtgcaagagtgt
agtctactgggcatcttggagaatgaccaacagccaaagggtttatggcc
aatgaagaatcatagagatagagttttttagatgtgcttaacacaaaggc
aagttttgcagtcttctgtcttcttaaaattttctcagagaagaggtttt
caatgagcagtctctagagtctttgaagaaagaaaaatggagtaatcatt
aggacaagagggtttgaactaaaaacatagcctaatcattgtagtgagtg
tcatctgtttgttggggatccgggcaagtgaaggcgtcctggagacctga
cagctggctggcatatttctcaatgagtgaggaaattttccagttcatct
gcggaaaatttggtccgatattaaggcacgaggctgcccatctgcagttt
gcaattggtacagacaagagaatcactattactttgtggaaccatgccac
aaatctggaacaaggcagactggcatgtctatttggggttggcagagctg
tggtttagtctattgttacaaggcagctttgccaagggagagtgagagtt
catgtgtattgtggcctcatcgcacacattatcctcaaatgaagagcgtg
tggaacgaactgtgaactctgacttttatgaagtgtgtctcattctccct
gcttgtgttgtgtctgtccaatggcctaatgcctttttcttctgaacagc
catttgtattcaagtgatgcctctatttgatgctgaaatcagttatggta
tatatcatttggcatcatgactcaaaggagaactcgatgtaacactcata
tgcctataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90524570_90525556
seq2: B6Ng01-138G23.b_47_1029

seq1  GAATTCAACAAATGCAAGGTTGGCATAATATAAAAGCAATTGTGAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAATGCAAGGTTGGCATAATATAAAAGCAATTGTGAAAATT  50

seq1  TCTACATAAAAGTAATAAATGGCATAAATACACAATTATCTGAGTAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAAAAGTAATAAATGGCATAAATACACAATTATCTGAGTAGGAA  100

seq1  AAAGTTGATACCCACACAAGAATAAAAGCTCCATTGTGTAAAGGGTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATACCCACACAAGAATAAAAGCTCCATTGTGTAAAGGGTATGC  150

seq1  ATAGAACAATCTATGATTAGTACTCTATTTCTTGATGAAAGACTGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAATCTATGATTAGTACTCTATTTCTTGATGAAAGACTGAATAT  200

seq1  GTCCCTTGACACTGGGTATAGGTAAATACTCTCAACACTTCTAGTCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTGACACTGGGTATAGGTAAATACTCTCAACACTTCTAGTCAATG  250

seq1  TACTATGGCAGCATAAGAAAACTAAGGGAATCTACCTTATAAAGAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGCAGCATAAGAAAACTAAGGGAATCTACCTTATAAAGAAAGAG  300

seq1  CAGATACTATATCTGTGACTACAATATGCAACATTCCCACATGAATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTATATCTGTGACTACAATATGCAACATTCCCACATGAATCCAC  350

seq1  ATCTTCATAAAGGTACTACAAGTAAGAAAAGACCTCATCATGGTCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATAAAGGTACTACAAGTAAGAAAAGACCTCATCATGGTCAATAT  400

seq1  ACCGAAGGTGAATACATAGATTTAATATGTATCCTGTATGAAATATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAGGTGAATACATAGATTTAATATGTATCCTGTATGAAATATAAGA  450

seq1  AACTCTGTTCCCAAAAAGCTTCCAAAGGGGCAAAGAGTTAAATCCAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTCCCAAAAAGCTTCCAAAGGGGCAAAGAGTTAAATCCAATAA  500

seq1  AAGATTTACAAGGGACTGGAGAGATGGCTCTCTGACTGCTCTTCCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTACAAGGGACTGGAGAGATGGCTCTCTGACTGCTCTTCCAGAGT  550

seq1  TCTTGAGTTCAATTCTCAGCACCCACAATGGTGGCATATAACTATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTCAATTCTCAGCACCCACAATGGTGGCATATAACTATCTGTA  600

seq1  ATGGGATCCGATACCCTCTTCTGGGGTGTGAAGACAGCTACAGTGTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCCGATACCCTCTTCTGGGGTGTGAAGACAGCTACAGTGTAATT  650

seq1  ATACATAAAATAAATAATTTTTTTAAAAAAAGCATTACAGTCTTATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAAATAAATAATTTTTTTAAAAAAAGCATTACAGTCTTATATAG  700

seq1  AAAACTAAAAAATTGTTCACAAGAAAGAAAAATATTTAAATGAATGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAAAATTGTTCACAAGAAAGAAAAATATTTAAATGAATGAAAT  750

seq1  ACATTCATATTCAATCTTGGCTAAAATTCCCCTCAATCTATAAGTTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATATTCAATCTTGGCTAAAATTCCCCTCAATCTATAAGTTCAGA  800

seq1  GAAGTTGCTAGCAAAATGAAGAGGTGGAAATTTTTATAGAAATTTGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGCTAGCAAAATGAAGAGGTGGAAATTTTTATAGAAATTTGAAAG  850

seq1  ATGTTTCTAAAGTTTATCTTGAAATACAATTTTCAAAAACTAACTAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGTTTCTAAAGTTTATCTTGAAATACAATTTTCAAAAACTAACTAAACT  900

seq1  CATTGTGGGAAAAAGTAACAAAATTAAGAGTGTTCATGTGTCCAATTCAA  950
      ||||||||| ||||||||| ||||||||||||||||||||||| ||||||
seq2  CATTGTGGG-AAAAGTAAC-AAATTAAGAGTGTTCATGTGTCC-ATTCAA  947

seq1  ATTTAATGTAATTATACAGGAATCAAAACAGTGGAGA  987
      |||| ||||||||||||||||||||||||||||||||
seq2  ATTT-ATGTAATTATACAGGAATCAAAACAGTGGAGA  983

seq1: chr4_90583760_90584791
seq2: B6Ng01-138G23.g_66_1074 (reverse)

seq1  TTATGGGCATATGGAGTGTTTTACATCCCAGAGTTCTCTCTTTTGAGTCA  50
      |||| ||||||| |||||  |||||||   ||||  |||| |||||||||
seq2  TTATAGGCATAT-GAGTG--TTACATC---GAGT--TCTCCTTTGAGTCA  42

seq1  TGATTTGCAAATGGATATAATAACCCATAAACTGATATCAGCATCAAAAT  100
      |||  ||| ||  ||||| |||  |||| ||||||| |||||||| ||||
seq2  TGA--TGCCAAATGATAT-ATA--CCAT-AACTGATTTCAGCATC-AAAT  85

seq1  AGAGCCATCCAACTTGAATAACAAATGGCTG-TCAGAAGAAAAAGGCATT  149
      |||| ||||  |||||||| ||||||||||| ||||||||||||||||||
seq2  AGAGGCATC--ACTTGAAT-ACAAATGGCTGTTCAGAAGAAAAAGGCATT  132

seq1  AGGCCATTAGGACAGACACAAACAACAAGCAAGGGAGAATGAGACAACAA  199
      |||||||| ||||||||||||   |||||| |||||||||||||||   |
seq2  AGGCCATT-GGACAGACACAA--CACAAGC-AGGGAGAATGAGACA--CA  176

seq1  CTTCAT-AAAGTCAGAGTTCCACAGTTCGTTCCACACGCTCTTCATTTGA  248
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCATAAAAGTCAGAGTT-CACAGTTCGTTCCACACGCTCTTCATTTGA  225

seq1  GGATAATGTGTGCGATGAGGCCACAATACACATGAACTCTCACTCTCCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGTGTGCGATGAGGCCACAATACACATGAACTCTCACTCTCCCT  275

seq1  TGGCAAAGCTGCCTTGTAACAATAGACTAAACCACAGCTCTGCCAACCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGCTGCCTTGTAACAATAGACTAAACCACAGCTCTGCCAACCCC  325

seq1  AAATAGACATGCCAGTCTGCCTTGTTCCAGATTTGTGGCATGGTTCCACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACATGCCAGTCTGCCTTGTTCCAGATTTGTGGCATGGTTCCACA  375

seq1  AAGTAATAGTGATTCTCTTGTCTGTACCAATTGCAAACTGCAGATGGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATAGTGATTCTCTTGTCTGTACCAATTGCAAACTGCAGATGGGCA  425

seq1  GCCTCGTGCCTTAATATCGGACCAAATTTTCCGCAGATGAACTGGAAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGCCTTAATATCGGACCAAATTTTCCGCAGATGAACTGGAAAAT  475

seq1  TTCCTCACTCATTGAGAAATATGCCAGCCAGCTGTCAGGTCTCCAGGACG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACTCATTGAGAAATATGCCAGCCAGCTGTCAGGTCTCCAGGACG  525

seq1  CCTTCACTTGCCCGGATCCCCAACAAACAGATGACACTCACTACAATGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTTGCCCGGATCCCCAACAAACAGATGACACTCACTACAATGAT  575

seq1  TAGGCTATGTTTTTAGTTCAAACCCTCTTGTCCTAATGATTACTCCATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTATGTTTTTAGTTCAAACCCTCTTGTCCTAATGATTACTCCATTT  625

seq1  TTCTTTCTTCAAAGACTCTAGAGACTGCTCATTGAAAACCTCTTCTCTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCAAAGACTCTAGAGACTGCTCATTGAAAACCTCTTCTCTGA  675

seq1  GAAAATTTTAAGAAGACAGAAGACTGCAAAACTTGCCTTTGTGTTAAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTAAGAAGACAGAAGACTGCAAAACTTGCCTTTGTGTTAAGCA  725

seq1  CATCTAAAAAACTCTATCTCTATGATTCTTCATTGGCCATAAACCCTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAAAAACTCTATCTCTATGATTCTTCATTGGCCATAAACCCTTTG  775

seq1  GCTGTTGGTCATTCTCCAAGATGCCCAGTAGACTACACTCTTGCACCCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGTCATTCTCCAAGATGCCCAGTAGACTACACTCTTGCACCCAC  825

seq1  AGAGATGGGAAATTGGGAGGCAGATGCTCCCTCACCAGCTACTTGACTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGAAATTGGGAGGCAGATGCTCCCTCACCAGCTACTTGACTGT  875

seq1  CAGGACCAATAAAGGAGACAACATAATTTTAGGGTACAAGTGAAGCCAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAATAAAGGAGACAACATAATTTTAGGGTACAAGTGAAGCCAAG  925

seq1  CTACATTCAAATAGAGCAGGGAACCAGTGATAAATAGGCTATGAAGAATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCAAATAGAGCAGGGAACCAGTGATAAATAGGCTATGAAGAATG  975

seq1  AAAAAGAAGAAACAAGCACATTTCATTTGAATTC  1032
      ||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGAAACAAGCACATTTCATTTGAATTC  1009