BAC Information

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BAC

Clone NameB6Ng01-138J23
Chromosome4 (Build37)
Map Location 145,660,376 - 145,730,765
singlet/doubletdoublet
Overlap geneLOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138J23.bB6Ng01-138J23.g
ACCDH937829DH937830
length1,0041,096
definitionDH937829|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J23, 5' end.DH937830|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,660,376 - 145,661,219)(145,729,651 - 145,730,765)
sequence
gaattctctgatgaactctcagactgcctttgtcagtaaagcatttgtca
cattcattacatttgtaaggtttctctcctgtatgaattctctgatgatt
tctcatagtgaatttgtcagtaaagcatttgtcgcattcactacatttgt
aaggtttctctcctgtatgaattctctgatgctttctcagagtgaatttg
tcagtaaagcatttgtcgcattcactacatttgcaaggtttctctcctga
atgaattctacgatgaatactaagatgggatggttgggtaaagcatttgt
cacactcactgcatttgtaaggtttctctcctgtatgaattctctgatga
actctcagactgcctttgtcagtaaagcatttgtcacattcattacattt
gtaaggtttctctcctgtatgaattttctgatgctttctcagagtgcatt
tgtcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcct
gaatgaattgtatgatgaatactaagatgggaaggttgggtaaagcattt
gtcactttcactatatttgtaagatttctttcctggataaattctctgct
gactttgaagattgtcaccctgagtaaagcatttgtcaaattcaccacaa
gtgtaagtgttcatttcactattgttttgtctcacaatgggtttatgttt
agaaaccaaaacctcatcaagatttttatttctgttgtgttctttcttct
ctacgtgggttccttgattgagactaatgatagaagacccctttaaacag
tttacacagtctttatatgtgcaaacttgtttagtggtcccagttttaag
tctttttaggtttgaggattggagagtggcatctctgtggttagttttat
gaggtgtactttcggaggattcatgaattacattgctagactcattacat
ttaaaagacttctcttggatatgcccatgctcattgaaaatgtgctgtgt
gtct
gaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgc
tttactttcaaaggcagtctgaggattcatcagagaattcatacaggaga
gaaaccttacaaatgcactgaatgtgacaaatcctttactgaaaagggca
aactgagaattcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttactgaataaggccatcagagaattcatac
aggagagataccttacaaatagtttgtatgtgacaaatacaatacaatgt
cagtctgagaaatcatcagtttttaatacagtagagaatatttataaatg
aagtgaacgagacaatcctttaccaagatatatcatcttaaaaatcatta
gagaatacttacagaagagaaacttttcaattatattgaaggtatgaatc
ctttactcttggcctatttcctagaatgttaacagtgaatacttacagga
tacaaacttaactcatgcattgtatgaagaaatatctttgacttcatttc
aggtcaaagagaatatctaataactttttaggggaaagtatttctgttgg
ggaaagtgtggcctgtgttttattcacgttctattcttgacaattgaggc
tccacactagagaattagtatgattatgaaaatcatgtgaaaactttcat
gcaatgttcaaatcttaaataatgtcaactattttttgcttgaagaaact
ctgaaaatgtaaaaatgtagaaagcttttcatgacacctttttacctgtt
cacccttaaatgttacaagatgaagacaagttgggaagtgaggagatatt
attgtgtaccacattcattgagacagaaataatccatttcaaaggaaact
atttaggtttttatgcagtcctcaaatatctaataaaactggtacattct
gtatatttattcaaatgagccattgagaaaatatacttaaagaatatctg
gcaactggaggccacccagacagcatattctttatctataaatatgctac
gatgtagggtgctcggagatcaggtaataatattcttctcaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145660376_145661219
seq2: B6Ng01-138J23.b_286_1048

seq1  CTCTCCTGAATGAATTCTACGATGAAAACTAAGATGGGATGGTTGGGTAA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCTCCTGAATGAATTCTACGATGAATACTAAGATGGGATGGTTGGGTAA  50

seq1  AGCATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTATGAATT  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATT  100

seq1  CTCTGATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCACACTC  150
      ||||||||||||||||||                                
seq2  CTCTGATGAACTCTCAGA--------------------------------  118

seq1  ACTGCATTTGTAAGGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCA  200
                                                    ||  
seq2  ----------------------------------------------CT--  120

seq1  GATAGCCTTTGTCAGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGT  250
          ||||||||||||||||||||||||||| ||| | ||||||||||||
seq2  ----GCCTTTGTCAGTAAAGCATTTGTCACATTCATTACATTTGTAAGGT  166

seq1  TTCTCTCCCGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGT  300
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTCTCCTGTATGAATTTTCTGATGCTTTCTCAGAGTGCATTTGTCAGT  216

seq1  AAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAA  266

seq1  TTGTATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTT  316

seq1  TCACTATATTTGTAAGATTTCTTTCCTGGCT---TTCTCTGCTGACTTTG  447
      ||||||||||||||||||||||||||||| |   ||||||||||||||||
seq2  TCACTATATTTGTAAGATTTCTTTCCTGGATAAATTCTCTGCTGACTTTG  366

seq1  AAGACTGTCACTCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAG  497
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTCACCCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAG  416

seq1  TGTTCATTTCACTATTGTTTTGTCTCACAATGGGTTTATGTTTAGAAACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTCACTATTGTTTTGTCTCACAATGGGTTTATGTTTAGAAACC  466

seq1  AAAACCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTG  597
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAACCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTACGTG  516

seq1  GGTTCCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACAC  566

seq1  AGTCTTTATATGTGCAAACTTCTTTAGTGGTCCCAGTTTTATGTCTTTTT  697
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  AGTCTTTATATGTGCAAACTTGTTTAGTGGTCCCAGTTTTAAGTCTTTTT  616

seq1  AGGTTTGAGAATTGGAATGTGGCATCTCTTTGGTTAGTGTTATAAGGTGT  747
      ||||||||| ||||||  ||||||||||| |||||||| |||| ||||||
seq2  AGGTTTGAGGATTGGAGAGTGGCATCTCTGTGGTTAGTTTTATGAGGTGT  666

seq1  ACTTTCGGAGGATTCATGAATCACATTACTAAGCTCATTACATTTAGAAG  797
      ||||||||||||||||||||| ||||| |||  ||||||||||||| |||
seq2  ACTTTCGGAGGATTCATGAATTACATTGCTAGACTCATTACATTTAAAAG  716

seq1  ACTTCTTTCGGATATGCCCATGCTCATTGACAATGTGCTGTATGTCT  844
      |||||| | ||||||||||||||||||||| |||||||||| |||||
seq2  ACTTCTCTTGGATATGCCCATGCTCATTGAAAATGTGCTGTGTGTCT  763

seq1: chr4_145729651_145730765
seq2: B6Ng01-138J23.g_69_1164 (reverse)

seq1  GCATTTGAGAAGAATTATTATTACTGAATACTCGAAGCACACTTCACATC  50
      |||||||||||||| |||||||||   || |||  ||||| ||  |||||
seq2  GCATTTGAGAAGAA-TATTATTACCTGAT-CTCCGAGCACCCT--ACATC  46

seq1  TGTAAGCATATTTATAGGATAAAGAATATGCTGTCTGGGTGG-CTCAGTT  99
       || |||||||||||| ||||||||||||||||||||||||| |||   |
seq2  -GT-AGCATATTTATA-GATAAAGAATATGCTGTCTGGGTGGCCTCCAGT  93

seq1  TGCCAGATATTCTTTTAAGTATAATTTTTCTCAATTGGCTCATTTGAATT  149
      |||||||||||| ||||||||||  ||||||||| ||||||||||||| |
seq2  TGCCAGATATTC-TTTAAGTATA--TTTTCTCAA-TGGCTCATTTGAA-T  138

seq1  AAATATACAGAATGTTACCAGTTTTATTAGATATTTTGAGGACTGCATTA  199
      |||||||||||||| |||||||||||||||||| ||||||||||||| ||
seq2  AAATATACAGAATG-TACCAGTTTTATTAGATA-TTTGAGGACTGCA-TA  185

seq1  AAGACCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTGTCTCAATGAA  249
      || ||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAACC-TAAATAGTTTCC-TTTGAAATGGATTATTTCTGTCTCAATGAA  233

seq1  TGTGTTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCTTGTA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCTTGTA  283

seq1  ACATTTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGCTTTCTACATT  349
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  ACATTTAAGGGTGAACAGGTAAAAAGGTGTCATGAAAAGCTTTCTACATT  333

seq1  TTTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAG  383

seq1  ATTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAAT  433

seq1  TCTCTAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACGTGAATAAAAC  499
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  TCTCTAGTGTGGAGCCTCAA---TTGTCAAGAATAGAACGTGAATAAAAC  480

seq1  ACAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAG  530

seq1  ATATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTGATACAATGC  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTCATACAATGC  580

seq1  ATGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAA  630

seq1  TAGGCCAAGAGTAAAGGATTCATACCTTTGATATAATTGAAAAGTTTCTC  699
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TAGGCCAAGAGTAAAGGATTCATACCTTCAATATAATTGAAAAGTTTCTC  680

seq1  TTCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGG  730

seq1  ATTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTG  780

seq1  ATGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTT  830

seq1  GTAAGGTATCTCTCCTGTATGAATTCTCTGATGGCCTTTTTCAGTAAAGC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAAGGTATCTCTCCTGTATGAATTCTCTGATGGCCTTATTCAGTAAAGC  880

seq1  ATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTC  930

seq1  TGATGAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGT  980

seq1  GCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATCCTCAGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATCCTCAGAC  1030

seq1  TGCCTTTGAAAGTAAAGCATTTGTCACATTCAGTGCATTTGTAAGGTTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGAAAGTAAAGCATTTGTCACATTCAGTGCATTTGTAAGGTTTC  1080

seq1  TCTCCTGTATGAATTC  1115
      ||||||||||||||||
seq2  TCTCCTGTATGAATTC  1096