BAC Information

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BAC

Clone NameB6Ng01-139C03
Chromosome4 (Build37)3 (Build37)
Map Location 72,031,994 - 72,033,11714,577,320 - 14,577,837
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039979, LOC667638, EG667649, Tle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C03.bB6Ng01-139C03.g
ACCDH938198DH938199
length1,120904
definitionDH938198|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C03, 5' end.DH938199|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,031,994 - 72,033,117)(14,577,320 - 14,577,837)
sequence
gaattctgttatagacatggcacatgtttcttaaatgtcttgttttaatt
taagagctgctgctataaagactgtttatatttccactatggttcaggct
aaaacttcatttccctttcgccacactggcgattctcaaatatataaatt
tttgttaatttggtgctgttccttttctagaaaaatgcatgtattctatg
tttctgggatttgttttttaatatttttaacatgaaatttttcataaaat
atattttagtcatattatttcttcccacaactcctcccaaattcttcata
tatccctactggcctctacatgcacacatgcgcgcgcacacacacacaca
cacacaaaggaaaaaaatataaaatagaaaaaagaaaatcaataagacaa
aaattaacaaaacaaaagctcaaacacagagagaaagcattggcatatgg
tatgtattggtcaattgcctctggatatgaggattgccttagagaatggt
tgacatacccagtaacatttcaatgctgtccctgtgacagcaggcatctg
ttgcaaataatttcttggttaggggtgggatttttgtgtcctcctgttct
agtgtctagattttgtctggtttgaatatgtatagatcttgtctgtgctg
ccacagtctctgtgtgttgatacatgcacaagtcttgtaatctctgggga
acagttttcatggaggcatcaccacttctggctcttgtgatctttctacc
caataacacatatcctctaacaatgccatgatccaatccttttcaacaat
tccacaagctggagaccaaatatgtgagcctacaaggccatatcatttca
accaccacacaaaacctaataaagaaaaaaaattaaataaaatttctgcc
atctacatagaagtttctggactgctgtggaggagataaagctggtggga
aggaaattatttttttccctcactttgccctctcacctctatttccttct
gttctatttctagtcatggaaaggactttacttcaaacccagaagaataa
gttatcaccagaaatacaagccttctgggcttggtacttcttaaatttcc
cacgcgaccttaacaggaca
gaattcagtgctaaggaagtctacagaagagagaatctgtcagttataca
tctgaaagaggattaatgcccagaaaatatagagaactcaaaaacaaaga
atcataaaaaccaatgactgatccaaaaaagtagacctgggacctgaaca
gagggtttttaaaagaataagtaaacatgactaagaaatattgtaaaaaa
aaaaaaaagttcattatctccaggaattagaaaaatgcaaaccaaaagaa
ctttgaaatttcatctttccccaatcagcatgaccaaacccaacaaaaca
actgacaacaaatgctggagaagatgtgagggaagtggaactcttattca
ctcttgatgagattacaaactagtctagacactttggaaagcagtgtgga
gatacctcaaaaggctaaacataagtgcaccaaaggacctagctcttacc
actacttcctgaaggactcatcaacttggtctacagatacttgctcaacc
atgatggctgttgctcaattcacaatagctaggaaatggaaacaacctac
aagtccttcaactgatgaatagataatgaaaatgtgctacataaacacta
tgcaatactgtttagccacaaagaaaataaaaacatgaactttgcaggtg
aatggatgcaactagaaatgatcatattaaatgaagtaattcagaaacag
aaataaaagaaaaattgcctggttttttttttattttttgttttgtttgt
ttttttgttttttttttttttctcatctgaggttctgaactccaaatttt
cagatttgagtatgtaatctggaataactgcagaaaccaggaaagtaaac
agagactgttgcttgggggaggaaaatggggataggagaaataaagaggg
gaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_72031994_72033117
seq2: B6Ng01-139C03.b_46_1165 (reverse)

seq1  TGTCCTGTTAAGGATGCTGTGGGAAATCTAAGAGGTA-CAAGCCCAG-AG  48
      |||||||||||||  || ||||||||| ||||| ||| ||||||||| ||
seq2  TGTCCTGTTAAGGTCGC-GTGGGAAATTTAAGAAGTACCAAGCCCAGAAG  49

seq1  GCTTGTA-TTCTGTGTGATAACTTATTCTTCTTGGTTTG-AGTAATAGTC  96
      ||||||| ||||| |||||||||||||||||| |||||| ||||| ||||
seq2  GCTTGTATTTCTG-GTGATAACTTATTCTTCTGGGTTTGAAGTAA-AGTC  97

seq1  CTTTCCAATGACTAGGAAATAGAACAGAAGGAAATAGAGGTGAGAAGGGC  146
      |||||| ||||||| ||||||||||||||||||||||||||||| |||||
seq2  CTTTCC-ATGACTA-GAAATAGAACAGAAGGAAATAGAGGTGAG-AGGGC  144

seq1  AAAGTGAGGG-AAAAAATAATTTCCTTCC--ACAGCTTTATCTCCTCCAC  193
      |||||||||| ||||||||||||||||||   ||||||||||||||||||
seq2  AAAGTGAGGGAAAAAAATAATTTCCTTCCCACCAGCTTTATCTCCTCCAC  194

seq1  AGCAGTCCAGGACACTTCTATGTAGATGGCAGAAATTTTATTTTAATTTT  243
      ||||||||| || ||||||||||||||||||||||||||| |||||||||
seq2  AGCAGTCCA-GAAACTTCTATGTAGATGGCAGAAATTTTA-TTTAATTTT  242

seq1  TTTTCTTTATTAGGTTTTGTGTGGTGGTTTGAATGATATGGCCTTGTAGG  293
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TTTTCTTTATTAGGTTTTGTGTGGTGGTTGAAATGATATGGCCTTGTAGG  292

seq1  CTCACATATTTGGTCTCCAGCTTGTGGAATTGTTTGAAAAGGATTTGGAT  343
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CTCACATATTTGGTCTCCAGCTTGTGGAATTG-TTGAAAAGGA-TTGGAT  340

seq1  CATTGGCATTGTTAGAGGATATGTGTTATTGGGTAGAAAGATCACAAGAG  393
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TGGCATTGTTAGAGGATATGTGTTATTGGGTAGAAAGATCACAAGAG  389

seq1  CCAGAAGTGGTGATGCCTCCATGAAAACTGTTCCCCAGAGATTACAAGAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTGGTGATGCCTCCATGAAAACTGTTCCCCAGAGATTACAAGAC  439

seq1  TTGTGCATGTATCAACACACAGAGACTGTGGCAGCACAGACAAGATCTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGTATCAACACACAGAGACTGTGGCAGCACAGACAAGATCTAT  489

seq1  ACATATTCAAACCAGACAAAATCTAGACACTAGAACAGGAGGACACAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCAAACCAGACAAAATCTAGACACTAGAACAGGAGGACACAAAA  539

seq1  ATCCCACCCCTAACCAAGAAATTATTTGCAACAGATGCCTGCTGTCACAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCCCTAACCAAGAAATTATTTGCAACAGATGCCTGCTGTCACAG  589

seq1  GGACAGCATTGAAATGTTACTGGGTATGTCAACCATTCTCTAAGGCAATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCATTGAAATGTTACTGGGTATGTCAACCATTCTCTAAGGCAATC  639

seq1  CTCATATCCAGAGGCAATTGACCAATACATACCATATGCCAATGCTTTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCCAGAGGCAATTGACCAATACATACCATATGCCAATGCTTTCT  689

seq1  CTCTGTGTTTGAGCTTTTGTTTTGTTAATTTTTGTCTTATTGATTTTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTTTGAGCTTTTGTTTTGTTAATTTTTGTCTTATTGATTTTCTT  739

seq1  TTTTCTATTTTATATTTTTTTCCTTTGTGTGTGTGTGTGTGTGTGCGCGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTTTATATTTTTTTCCTTTGTGTGTGTGTGTGTGTGTGCGCGC  789

seq1  GCATGTGTGCATGTAGAGGCCAGTAGGGATATATGAAGAATTTGGGAGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTGCATGTAGAGGCCAGTAGGGATATATGAAGAATTTGGGAGGA  839

seq1  GTTGTGGGAAGAAATAATATGACTAAAATATATTTTATGAAAAATTTCAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGGAAGAAATAATATGACTAAAATATATTTTATGAAAAATTTCAT  889

seq1  GTTAAAAATATTAAAAAACAAATCCCAGAAACATAGAATACATGCATTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAATATTAAAAAACAAATCCCAGAAACATAGAATACATGCATTTT  939

seq1  TCTAGAAAAGGAACAGCACCAAATTAACAAAAATTTATATATTTGAGAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGGAACAGCACCAAATTAACAAAAATTTATATATTTGAGAAT  989

seq1  CGCCAGTGTGGCGAAAGGGAAATGAAGTTTTAGCCTGAACCATAGTGGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGTGTGGCGAAAGGGAAATGAAGTTTTAGCCTGAACCATAGTGGAA  1039

seq1  ATATAAACAGTCTTTATAGCAGCAGCTCTTAAATTAAAACAAGACATTTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACAGTCTTTATAGCAGCAGCTCTTAAATTAAAACAAGACATTTA  1089

seq1  AGAAACATGTGCCATGTCTATAACAGAATTC  1124
      |||||||||||||||||||||||||||||||
seq2  AGAAACATGTGCCATGTCTATAACAGAATTC  1120

seq1: chr3_14577320_14577837
seq2: B6Ng01-139C03.g_585_835

seq1  ATTCATAATAGCCGGAAACTGGAAACAACCTAC-ATTCCCTCAATCGAAC  49
      ||||| ||||||  | || |||||||||||||| | ||| ||||  ||  
seq2  ATTCACAATAGCTAGGAAATGGAAACAACCTACAAGTCCTTCAACTGATG  50

seq1  AATGGATTTAAAGATAAAATAAGTGGTACATTATCACAATGGAGTATTAC  99
      ||| ||  ||| |  |||||  ||| ||||| | ||| ||| | ||    
seq2  AATAGA--TAATG--AAAAT--GTGCTACATAAACACTATGCAATA----  90

seq1  TCGGTTGTTTA---AAAAAAAAAATGACATCATGAAATATACTGGCAAAT  146
           ||||||   | ||| ||||| | | |||||| | | | ||  |||
seq2  ----CTGTTTAGCCACAAAGAAAATAAAAACATGAACTTTGCAGGTGAAT  136

seq1  TGATGGAACTCAAAAACCTCATCCTGAGTGAAGTAACCCAAACTCAG---  193
       |||| ||||  |||   ||||  | | ||||||||  || |  |||   
seq2  GGATGCAACTAGAAATGATCATATTAAATGAAGTAATTCAGAAACAGAAA  186

seq1  --AAAGATGAA---CATGG-------TACATACTCACTTATAAGTGGATC  231
        |||||  ||   | |||       |  ||  |   || |   ||  | 
seq2  TAAAAGAAAAATTGCCTGGTTTTTTTTTTATTTTTTGTTTTGTTTGTTTT  236

seq1  TTAGCTGTAAAGTAAACATAATGCTACAATCCCCAGACCCAGAAAGACTA  281
      || | | |    |                                     
seq2  TTTGTTTTTTTTTTT-----------------------------------  251

seq1  AGTAACAAGACAGGCTAAAGAGGGTATCTCTCTGGAAAGGGTCAGTGGAA  331
                                                        
seq2  --------------------------------------------------  251

seq1  TAGAATCTGCAGGTGGATTGGGGGGGCAGACGGGGATTTTAAGTGTTGCA  381
                                                        
seq2  --------------------------------------------------  251

seq1  GCTCTGAAGGAAAATGCTTCCCCTACAGAAGTTTTGCTCCAGACGCCTGG  431
                                                        
seq2  --------------------------------------------------  251

seq1  AAAAATTTTGGTTTAAAATTGTTTTCAGGATTTACTAGTTAATGCTGTCA  481
                                                        
seq2  --------------------------------------------------  251

seq1  GTTTCTCCTCGCGTTTTGTTTTTTTGTTTTTTTTTTT  518
                                           
seq2  -------------------------------------  251