BAC Information

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BAC

Clone NameB6Ng01-139C09
Chromosome4 (Build37)
Map Location 121,508,168 - 121,509,287
singlet/doubletsinglet
Overlap genenone
Upstream geneRims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
Downstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C09.bB6Ng01-139C09.g
ACCDH938210DH938211
length1,0941,179
definitionDH938210|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C09, 5' end.DH938211|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttaacggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattggc
attcttctacacgataacaaccagttgtgcttatcatcatcactatcatc
atcatcatgtcctccagaaggtacctactaaacaaataaatataggttaa
aaaattagaatagccaggagctggtggcacaggactttaatccaacactc
ctgaggctaactatgacctattattttctgccatattccaagactgctag
caccccacacagaaaggcagtctgaaataaaaccataaaacaaacaaaca
gccccactgcaaacaagttatttatctatgtatttattatttattcattt
attaagagggctggagagatagctcactggtcaaagagtactcatacaga
ggtggctaacaattcctgtaactcgagcttgagatgatgtgatgaccctc
ctcgaatctctggggacactgaaacacatgcattcatgaccactccaaca
catacacacatatacacaaataactaacaaaaaattaaaaaaaaaaagaa
tcagggcagtggactatgcaaccagacaaactggcatattgaaacagttt
aaaaccctggtagatttcataatcgagaaaatagtgtaacccaggtcgta
gctagctgtacctgtctggacatatgacgtgactttcatagaggacatac
tacagtcatagacaaactgaagtctttccttgaaataatcatcc
gaattctggattactatttttgaggtgagtgggtgggcatatctcccaac
cagggactgtacctatccactggatatggtttctacagtttctttatcca
ttttgttgggtatgtcagctaatttcctccctgttgggtcctgggttcgc
cctcagccactgctacataccttctttcaaattcctggcactctgtactt
ctcccccatctcctaatctgtctgaacctgccccttctccacctcccaga
tccctctatcccctctacctttcaagattattttcttcccttttctgagt
agaactgtagcatccaccctttggtgtggtcttcactcttcttgggtttc
atatggtctgtgagttgtattgtgggtattcccagtctttgttgggaact
attaagacaactctattgccttgatctccgaattgggcctctccccccaa
aaagaaaagggggtcaaaagtgggccactgacgcaccattccaagaacaa
ccacagaatgttccagccctaagtcagcgccagatgtcctgaccacaaga
tataccctgataccaccaagttcctgcttccccatgtagttgccaaaaga
aaattttctgctgccccattcctcctgctgagaagtacttcctcttttgc
ttgtgcatttccaatgccccatccctcctgatgagaagtacttcctcctt
tgcttgagcatttaagccttgagccttgctgaatacagtgagactttgat
gctactcagactgtttacctgtcatttctcacacttgatttccatccctc
cctcccccccatttggctcttaggagaaggtcccctctagatcctcaaat
aactggacctgctggatgggtcaagtggcaccagaccaccctccagacaa
cggatcaaaggtaccgtgtagacagtgagacagttccctgccacttcact
cgagtgttgcagacgtcagaggtagcccagaactataagaatgttgttcc
attcactatgggggaggttctgtctaaagaaacagttttattcagagatg
aagggtctcttagggagagaggaataagattaggaaaggaatataaattt
ttttgattgtttggtggaagaagagaagccagtgctggattgaatgagtc
tgaaatactacgccttacactgtggatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121508168_121509287
seq2: B6Ng01-139C09.b_45_1138 (reverse)

seq1  GGATGATTTATTTTCAAAGGGAAGGACTTCAGGTGTTGTCCTATGACTGG  50
      ||||||||   ||||||  |||| ||||||||   |||| |||||||| |
seq2  GGATGATT--ATTTCAA--GGAAAGACTTCAG--TTTGT-CTATGACT-G  42

seq1  TAGTTATGGTCCTCCTAATGAAATGTCACTGTCATATGTCCCAGGACAGG  100
      ||| ||| ||||||   |||||| ||||| |||||||||||   ||||||
seq2  TAG-TAT-GTCCTC--TATGAAA-GTCAC-GTCATATGTCC--AGACAGG  84

seq1  TACAGCTTAGCTACGACCTGGGTTACACCTATTTTCCTCGATTATGAAAT  150
      |||||| |||||||||||||||||||| ||||||| ||||||||||||||
seq2  TACAGC-TAGCTACGACCTGGGTTACA-CTATTTT-CTCGATTATGAAAT  131

seq1  CTACCAGGGTTTTAAACCTGTTTCAATATTGCCAGTTTTGTCTGGTGGCA  200
      |||||||||||||||| ||||||||||| |||||| |||||||||| |||
seq2  CTACCAGGGTTTTAAA-CTGTTTCAATA-TGCCAG-TTTGTCTGGTTGCA  178

seq1  TAGTCCACCTGCCCCTGATTCTTTTTTTTTTTAATTTTTTTTGTTAGTTA  250
      ||||||| ||| ||||||||||||||||||||||  ||||||||||||||
seq2  TAGTCCA-CTG-CCCTGATTCTTTTTTTTTTTAA--TTTTTTGTTAGTTA  224

seq1  TTTGTGTATATGTGTGTATGTGTTGGAGTGGTCATGAATGCATGTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTATATGTGTGTATGTGTTGGAGTGGTCATGAATGCATGTGTTTC  274

seq1  AGTGTCCCCAGAGATTCGAGGAGGGTCATCACATCATCTCAAGCTCGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCCCAGAGATTCGAGGAGGGTCATCACATCATCTCAAGCTCGAGT  324

seq1  TACAGGAATTGTTAGCCACCTCTGTATGAGTACTCTTTGACCAGTGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAATTGTTAGCCACCTCTGTATGAGTACTCTTTGACCAGTGAGCT  374

seq1  ATCTCTCCAGCCCTCTTAATAAATGAATAAATAATAAATACATAGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCTCTTAATAAATGAATAAATAATAAATACATAGATAAA  424

seq1  TAACTTGTTTGCAGTGGGGCTGTTTGTTTGTTTTATGGTTTTATTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTTGCAGTGGGGCTGTTTGTTTGTTTTATGGTTTTATTTCAGA  474

seq1  CTGCCTTTCTGTGTGGGGTGCTAGCAGTCTTGGAATATGGCAGAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTCTGTGTGGGGTGCTAGCAGTCTTGGAATATGGCAGAAAATAA  524

seq1  TAGGTCATAGTTAGCCTCAGGAGTGTTGGATTAAAGTCCTGTGCCACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATAGTTAGCCTCAGGAGTGTTGGATTAAAGTCCTGTGCCACCAG  574

seq1  CTCCTGGCTATTCTAATTTTTTAACCTATATTTATTTGTTTAGTAGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTATTCTAATTTTTTAACCTATATTTATTTGTTTAGTAGGTAC  624

seq1  CTTCTGGAGGACATGATGATGATGATAGTGATGATGATAAGCACAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGGACATGATGATGATGATAGTGATGATGATAAGCACAACTGG  674

seq1  TTGTTATCGTGTAGAAGAATGCCAATCGATCCATACTTATCTCCTTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCGTGTAGAAGAATGCCAATCGATCCATACTTATCTCCTTGTAC  724

seq1  TAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACAC  774

seq1  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACA  824

seq1  GGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  874

seq1  AATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAG  924

seq1  ACACCATCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTT  974

seq1  ACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACT  1024

seq1  CAAGAAGGTGGACTTCAGAAAATCAAATAACCCCGTTAAAAAATGGGGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGTGGACTTCAGAAAATCAAATAACCCCGTTAAAAAATGGGGCT  1074

seq1  CAGAACTGAACAAAGAATTC  1120
      ||||||||||||||||||||
seq2  CAGAACTGAACAAAGAATTC  1094