BAC Information

Click to search

BAC

Clone NameB6Ng01-139N17
Chromosome4 (Build37)4 (Build37)
Map Location 146,092,977 - 146,093,800145,761,381 - 145,762,455
singlet/doubletsingletsinglet
Overlap geneMGC117846
Upstream geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139N17.bB6Ng01-139N17.g
ACCDH938734DH938735
length1,0991,056
definitionDH938734|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N17, 5' end.DH938735|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,092,977 - 146,093,800)(145,761,381 - 145,762,455)
sequence
gaattcatacaggacagaaaccttacaaatgcagtgaatgtggcaaatgc
tttacccaacaatccaatcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttacccaacaatcca
atcttagtattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtgacaaatgcttttcccgaaaattccatcttggtattcatca
gagaattcatacaggagagaatccttataaatgtagtgaatgtaacaaat
gctttacccaaaattcctatcttaatattcatcagagaattcatgcagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttactgaaaaagg
cagtctgacaattcatcagagaattcatacaggagagaaaccttacaaat
gtagtgaatgtgacaaatgcttttcccgaaaattccatcttggtattcat
cagagaattcatacaagagagaaacctcacaaatgtagtgaatgtgacaa
atgctttacccagaaatcccatcttagtattcatcagaaaattcatacaa
gagagaaaccttacaaatagattgtatgtgacaaatacaatactcacaat
gtcagtctgagaaatcatcagttatttcatgcagtagagaatctttataa
atgaagtgaacgagacaatcctttaccaagatatatcatctcaaaattca
ttagagaatacttagagaagacaaacttttcaaatatattgtaggtatga
atcctttccttttggcctagttcctagaatataacagtgaatatacttac
aggctagaaacttagctcatgcattgtatgaagaaatagctttgacttca
tttcagtcagagagaacatctagaactttttagggtaaagtatttctgtt
agggaaatgtgtattcttgacacacttgaggctcacactagagatagtat
gattatgaatcttgtcaaactttcatgcaatgtcaatcttagatatgtac
ctatttgtgtgggagaaactctgaatgtgaaatgtagaagctttcatga
gaattcattctgaacatgtagatactattactgaagaaagttgtcatgac
catgatatcagcaaatattcagtgctttttatgtatttcattgaccttat
atttctctcatgtcaaatatttctcttggcatttgacaggtatatgaatg
atctctttcaatgccccagcctgagaaatatagattgacaatgggaaaaa
aaagcagatgatcgagtaccatagaaagtgatagaaaatgaatgagaatt
gacaagggaaatattgatttcctaggaacaataaacactaggccagggaa
taatcaagagcagaaacccaggctctcagtgttccttctagcactttctc
aggaataatcaaatgctgcaccaaattcacaaatttcttctgaaaaatcc
cacaaaaaaaatgtacagataaaacagtgcagaacacagaaagaagggga
atatggtacagttatcacacaaagctgaccttacctgggtccaaaagcaa
ataaccacgaaaacatgcacacaaaaaataataatagtatgggtgcacca
gtgcaacatttaaaaagtttctctctaatagatgcagaaagtaaactcaa
cttgatttcatgccagagactcaaaactgtttcaacaagcacaaaccaaa
caactcaaggcataaactataatcagtgggagaaagctcacaaccatgtc
aatatatctatgaaaggcctagagcaaaatatcacagtgcatcactatga
aagctgtgaagaatgtggaacagaaagaacattactgagtctaatgagga
taatagccaacatcctaagcctatcactgcacaaactgaagacagctgtc
atcattctactctactcagaagacaaacaaggatgtgcaagcctccatgc
taattgatcacgatatggcagtgcttacaaagagcagtagacttagatat
ttttcatgatcaagaaggatagaggaaggagtttcttgaattacaaaaag
atattctttagtcagacttgcagtattccagaaaatatccatctgataaa
tactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146092977_146093800
seq2: B6Ng01-139N17.b_341_1145

seq1  ACAAATGCTTTACCAAACCATCCCATCTTAGTATTCATCAGAGAATTCAT  50
      |||||||||||||| ||   ||| |||||| |||||||||||||||||||
seq2  ACAAATGCTTTACCCAAAATTCCTATCTTAATATTCATCAGAGAATTCAT  50

seq1  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTAATGA  100
       |||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGA  100

seq1  AAAAAACATTCTGAAAATTCATCAGAGAATTCATACAGGAGAGAGACCTT  150
      ||||  || ||||| ||||||||||||||||||||||||||||| |||||
seq2  AAAAGGCAGTCTGACAATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150

seq1  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200

seq1  ATTCATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATG  250
      ||||||||||||||||||||| || |||||||| ||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGAATG  250

seq1  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300

seq1  ATACAGGAGAGAAACCTTACAAATAGAATGTATGTGACAAATACAATACT  350
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACAAGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  350

seq1  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  400
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CACAATGTCAGTCTGAGAAATCATCAGTTATTTCATGCAGTAGAGAATCT  400

seq1  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450

seq1  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500

seq1  GTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGA--AT  548
      ||||||||||||||||||||||||| |||||||| | |||||||||  ||
seq2  GTATGAATCCTTTCCTTTTGGCCTAGTTCCTAGAATATAACAGTGAATAT  550

seq1  ACTTACAGGCTATAAACTTAACTCATGCATTGTATGAAGAAATATCTTTG  598
      |||||||||||| ||||||| ||||||||||||||||||||||| |||||
seq2  ACTTACAGGCTAGAAACTTAGCTCATGCATTGTATGAAGAAATAGCTTTG  600

seq1  ACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTA  648
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  ACTTCATTTCA-GTCAGAGAGAACATCT-AGAACTTTTTAGGGTAAAGTA  648

seq1  TTTCTGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCTCCACAC  698
      |||||||| ||| ||||| |||||||||||| |||||||||||| |||||
seq2  TTTCTGTTAGGG-AAATG-TGTATTCTTGAC-ACACTTGAGGCT-CACAC  694

seq1  TAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATGCAATGT  748
      ||||||  |||||||||||||  |||||||| ||| | ||||||||||||
seq2  TAGAGA--TAGTATGATTATG--AATCTTGTCAAACT-TTCATGCAATGT  739

seq1  TCAAATCTTAGATAATGTCAACTATTTATGTTGGGAGAAACTCTAAAAAT  798
         |||||||||| |||| | |||||| || |||||||||||||   |||
seq2  --CAATCTTAGAT-ATGT-ACCTATTTGTG-TGGGAGAAACTCT--GAAT  782

seq1  GTGAAAATGTAGAAAGCTTTTCATGA  824
      ||| |||||||| |||| ||||||||
seq2  GTG-AAATGTAG-AAGC-TTTCATGA  805

seq1: chr4_145761381_145762455
seq2: B6Ng01-139N17.g_71_1126

seq1  GAATTCATTCTGAACATGTAGATACTATTACTGAAGAAAGTTGTCATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGAACATGTAGATACTATTACTGAAGAAAGTTGTCATGAC  50

seq1  CATGATATCAGCAAATATTCAGTGCTTTTTATGTATTTCATTGACCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATCAGCAAATATTCAGTGCTTTTTATGTATTTCATTGACCTTAT  100

seq1  ATTTCTCTCATGTCAAATATTTCTCTTGGCATTTGACAGGTATATGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCATGTCAAATATTTCTCTTGGCATTTGACAGGTATATGAATG  150

seq1  ATCTCTTTCAATGCCCCAGCCTGAGAAATATAGATTGACAATGGGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTCAATGCCCCAGCCTGAGAAATATAGATTGACAATGGGAAAAA  200

seq1  AAAGCAGATGATCGAGTACCATAGAAAGTGATAGAAAATGAATGAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGATGATCGAGTACCATAGAAAGTGATAGAAAATGAATGAGAATT  250

seq1  GACAAGGGAAATATTGATTTCCTAGGAACAATAAACACTAGGCCAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGAAATATTGATTTCCTAGGAACAATAAACACTAGGCCAGGGAA  300

seq1  TAATCAAGAGCAGAAACCCAGGCTCTCAGTGTTCCTTCTAGCACTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGAGCAGAAACCCAGGCTCTCAGTGTTCCTTCTAGCACTTTCTC  350

seq1  AGGAATAATCAAATGCTGCACCAAATTCACAAATTTCTTCTGAAAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATCAAATGCTGCACCAAATTCACAAATTTCTTCTGAAAAATCC  400

seq1  CACAAAAAAAATGTACAGATAAAACAGTGCAGAACACAGAAAGAAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAAATGTACAGATAAAACAGTGCAGAACACAGAAAGAAGGGGA  450

seq1  ATATGGTACAGTTATCACACAAAGCTGACCTTACCTGGGTCCAAAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTACAGTTATCACACAAAGCTGACCTTACCTGGGTCCAAAAGCAA  500

seq1  ATAACCACGAAAACATGCACACAAAAAATAATAATAGTATGTGGTGCACC  550
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAACCACGAAAACATGCACACAAAAAATAATAATAGTATG-GGTGCACC  549

seq1  AGTGCAACATTTAAAAAGTTTCTCTCTAATAGATGCAGAAAGTAAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACATTTAAAAAGTTTCTCTCTAATAGATGCAGAAAGTAAACTCA  599

seq1  ACTTGATTTCATGCCAGAGACTCAAAACTGTTTCAACAAGCACAAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTTCATGCCAGAGACTCAAAACTGTTTCAACAAGCACAAACCAA  649

seq1  ACAACTCAAGGCATAAACTATAATCAGTGGGAGAAAGCTCACAACCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAAGGCATAAACTATAATCAGTGGGAGAAAGCTCACAACCATGT  699

seq1  CAATATATCTATGAAAGGCCTAGAGCAAAATATCACAGTGCATCACTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATCTATGAAAGGCCTAGAGCAAAATATCACAGTGCATCACTATG  749

seq1  AAAGCTGTGAAGAATGTGGAACAGAAAGAACATTACTGAGTCTAATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTGAAGAATGTGGAACAGAAAGAACATTACTGAGTCTAATGAGG  799

seq1  ATAATAGCCAACATCCTAAGCCTATCACTGCACAAACTGAAGACAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCCAACATCCTAAGCCTATCACTGCACAAACTGAAGACAGCTGT  849

seq1  CATCATTCTACTCTACTCAGAAGACAAACAAGGATGTGCAAAGCCTCCAT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATCATTCTACTCTACTCAGAAGACAAACAAGGATGTGC-AAGCCTCCAT  898

seq1  GCTAATTGATCACGATATGGCAGTGCTTACAAAGAGCAAGTAAGACTTAG  950
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  GCTAATTGATCACGATATGGCAGTGCTTACAAAGAGC-AGT-AGACTTAG  946

seq1  AATATTTTCAATGATCAAAGAAGGATAAGAGGAAGGGAAGTTTTCTTGAA  1000
       |||||||  |||||| ||||||||| |||||||||  || |||||||||
seq2  -ATATTTTTCATGATC-AAGAAGGAT-AGAGGAAGG--AG-TTTCTTGAA  990

seq1  TTACAAAAAAGATAATTCTTTAATTCAAGACTTGCAAGTATCCCAAGAAA  1050
      |||| |||||||| |||||||| |   |||||||| ||||| || |||||
seq2  TTAC-AAAAAGAT-ATTCTTTAGT--CAGACTTGC-AGTATTCC-AGAAA  1034

seq1  ATAATCCAATCTGATAAAATACTTA  1075
      || |||| ||||||| |||||||||
seq2  AT-ATCC-ATCTGAT-AAATACTTA  1056