BAC Information

Click to search

BAC

Clone NameB6Ng01-140C09
Chromosome4 (Build37)
Map Location 66,744,305 - 66,961,487
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C09.bB6Ng01-140C09.g
ACCDH938955DH938956
length1,1271,108
definitionDH938955|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C09, 5' end.DH938956|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,744,305 - 66,745,467)(66,960,357 - 66,961,487)
sequence
gaattcatttttatcattcgtttgccctaaaaatgcataactgaaatcta
attaggagtcataatcatatatatgtatatattctaccattcatatatat
acatataaggttgcattccttagaaggtataaagacattttcacaggtgt
ctcacaaggccactggaaacacaaatataacagttacagttatatctgta
tatagataaacacagttccagttataacatagcaacttcataattgtatg
aacataattttatgcatcaggtcacagcatgaacaactctattacaaggt
cacagtattagggaagttgagaaccattgctctaaagcaatttgcttttc
tctttaaatttattaatgccgtgaaagtcaagcaaactctaataaacttt
cccaaactgaaggcaataggggaacaatggagaaaatatgtagtacataa
atatagattgatgcaggtttccagggccgagtacctaccgtgagtctgag
ttttctgatcttggtggttatatcatactagagataacattcttactttt
gttagacaatgtgctgaagttttcaggaatagtgaaacagtgggtctaaa
tatcactttcaatttcttcagtgttgagtgaaatttttatacttttaact
ttgccgtttttctatagaataaaaacatttcaaggtaaaaggtttatatt
tttagaaaaatatggctttaaatgtaaatgaaagttatttctgacatttt
gaggttgccattataatactgaaatataaaagtggaaaaaatcaatggga
aaaagtcaattactttacaaaagaaaataaacttttggacacacctggaa
ttatatttctaactgctaatatttaagactctagtgttctttgtgtcatc
atgataaggaaaggaaggaggagagaagaaaaagaaggggaaagatagaa
ataaagggaggaaagatagaagtggaatttatagagatacatagacccca
acacccaccctaccccctcgcactaatttgtggacagcttttaggtacag
ttcttcatgtaagaggagcttgatgaaattgacatgttagcaagtgtttg
atcccagccacctcatccccagctcta
gaattcatactttggtttgttgtggcttatctctttagactcatctctct
cttctgttcctatggcagaagtagaatagaagcaaaatacattcaaaggc
ccttcaaacaaacatatgaacactagggagttcagagtgcatacaggtaa
ttaccaatattttcaggagataaaataactaattttcccttaattactta
atcttggctatataattatgagtgactcctcttacagtatattttattag
cctattcaatttattcattaattaaaaaggaaaaaatcaaataaaaatct
gtcatttgtaattttgtcttgtttttccttgaacctggcatattgaagct
cttctctatattaatatttagctgtctgtctcacccagcacatatgttct
tcctttcagattcagatttcagtttgtttcctagttttttttttttttct
tgaaatgctctgttatatgccaggaagaagcctgccccttgagttcatgt
aatattccaggctcacagaccttattgagttattttctttgctgcaatca
gtctttaaatacaattcagtaaagatacagcaatgatttttgacaacctg
acctttctcagctttcttacacttgtttaattaggtactatgtgcagctg
agacttgatctttacagttttcctctggaaaaaaaagagagagagatatg
ttgtttaagaaggtcatatttggcaggttttctacttacttcaggaactg
acattggagacttgggaattttatgctgttttttcttaaacacaataaaa
aaatctgacttggaaatactgtttgagttcaagaataagttatgaaatct
ttcacttctgacttgacagtctgcaatgactgcaagcataatgctgaaag
tggcctttgtgtgtccaaggcatgactcataggtcagactttcattttaa
atagtcaaaaaatccacaccctgtactaaagcaaggacttatactaaacc
atgatttatttataccagattatcgaatgtgttaataaggttcaaaccca
cctaagtagtgatgaagacatggcaaaaataactagggtctggttatgga
aatacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66744305_66745467
seq2: B6Ng01-140C09.b_49_1175

seq1  GAATTCATTTTTATCATTCGTTTGCCCTAAAAATGCATAACTGAAATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTATCATTCGTTTGCCCTAAAAATGCATAACTGAAATCTA  50

seq1  ATTAGGAGTCATAATCATATATATGTATATATTCTACCATTCATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGTCATAATCATATATATGTATATATTCTACCATTCATATATAT  100

seq1  ACATATAAGGTTGCATTCCTTAGAAGGTATAAAGACATTTTCACAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAGGTTGCATTCCTTAGAAGGTATAAAGACATTTTCACAGGTGT  150

seq1  CTCACAAGGCCACTGGAAACACAAATATAACAGTTACAGTTATATCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGGCCACTGGAAACACAAATATAACAGTTACAGTTATATCTGTA  200

seq1  TATAGATAAACACAGTTCCAGTTATAACATAGCAACTTCATAATTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAAACACAGTTCCAGTTATAACATAGCAACTTCATAATTGTATG  250

seq1  AACATAATTTTATGCATCAGGTCACAGCATGAACAACTCTATTACAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATTTTATGCATCAGGTCACAGCATGAACAACTCTATTACAAGGT  300

seq1  CACAGTATTAGGGAAGTTGAGAACCATTGCTCTAAAGCAATTTGCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTAGGGAAGTTGAGAACCATTGCTCTAAAGCAATTTGCTTTTC  350

seq1  TCTTTAAATTTATTAATGCCGTGAAAGTCAAGCAAACTCTAATAAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAATTTATTAATGCCGTGAAAGTCAAGCAAACTCTAATAAACTTT  400

seq1  CCCAAACTGAAGGCAATAGGGGAACAATGGAGAAAATATGTAGTACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTGAAGGCAATAGGGGAACAATGGAGAAAATATGTAGTACATAA  450

seq1  ATATAGATTGATGCAGGTTTCCAGGGCCGAGTACCTACCGTGAGTCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATTGATGCAGGTTTCCAGGGCCGAGTACCTACCGTGAGTCTGAG  500

seq1  TTTTCTGATCTTGGTGGTTATATCATACTAGAGATAACATTCTTACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGATCTTGGTGGTTATATCATACTAGAGATAACATTCTTACTTTT  550

seq1  GTTAGACAATGTGCTGAAGTTTTCAGGAATAGTGAAACAGTGGGTCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACAATGTGCTGAAGTTTTCAGGAATAGTGAAACAGTGGGTCTAAA  600

seq1  TATCACTTTCAATTTCTTCAGTGTTGAGTGAAATTTTTATACTTTTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTTCAATTTCTTCAGTGTTGAGTGAAATTTTTATACTTTTAACT  650

seq1  TTGCCGTTTTTCTATAGAATAAAAACATTTCAAGGTAAAAGGTTTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTTTTTCTATAGAATAAAAACATTTCAAGGTAAAAGGTTTATATT  700

seq1  TTTAGAAAAATATGGCTTTAAATGTAAATGAAAGTTATTTCTGACATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAATATGGCTTTAAATGTAAATGAAAGTTATTTCTGACATTTT  750

seq1  GAGGTTGCCATTATAATACTGAAATATAAAAGTGGAAAAAAATCAATGGG  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGTTGCCATTATAATACTGAAATATAAAAGTGG-AAAAAATCAATGGG  799

seq1  AAAAAAGTCAATTACTTTACAAAAAGAAAAATAAACTTTTGGACACACCT  850
       |||||||||||||||||||||||   |||||||||||||||||||||||
seq2  -AAAAAGTCAATTACTTTACAAAA--GAAAATAAACTTTTGGACACACCT  846

seq1  GGAATTATATTTCTAACTGCTAATATTTTAAGACCTCTAGTGTTCTTTGT  900
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GGAATTATATTTCTAACTGCTAATA-TTTAAGA-CTCTAGTGTTCTTTGT  894

seq1  GTCATCATGATAAGGAAAGGAAGGGAGGAAGAGAAGAAAAAAGAAGGGGA  950
      |||||||||||||||||||||| ||||| ||||||| |||||||||||||
seq2  GTCATCATGATAAGGAAAGGAA-GGAGG-AGAGAAG-AAAAAGAAGGGGA  941

seq1  AAGAATAGAAAATAAAAGGAGAGGGAAAGATAGAAGTGGAATTTATAGAG  1000
      ||| |||| ||||||| |||   |||||||||||||||||||||||||||
seq2  AAG-ATAG-AAATAAAGGGA---GGAAAGATAGAAGTGGAATTTATAGAG  986

seq1  ATACATAGACACACAAACACACACACATACACACATACAGCACTAATTTG  1050
      ||||||||  || | ||||| ||| | ||| | |     |||||||||||
seq2  ATACATAG--ACCCCAACACCCAC-CCTACCCCC---TCGCACTAATTTG  1030

seq1  T-GACAGCTTTTCAGGTACAGTTACTTCAATGTTAAAGAGGGAGCCTTGA  1099
      | |||||||||| |||||||||| |||| ||||  |||| |||| |||||
seq2  TGGACAGCTTTT-AGGTACAGTT-CTTC-ATGT--AAGA-GGAG-CTTGA  1073

seq1  TGAAATATGAACATGTTTAGCAACAGTGTTTGATCCACAAGCCACCCTCA  1149
      |||||| || ||||| ||||||  |||||||||||  | ||||| |||||
seq2  TGAAAT-TG-ACATG-TTAGCA--AGTGTTTGATC--CCAGCCA-CCTCA  1115

seq1  TCCCCCATGCTCTA  1163
      |||||   ||||||
seq2  TCCCC--AGCTCTA  1127

seq1: chr4_66960357_66961487
seq2: B6Ng01-140C09.g_69_1176 (reverse)

seq1  TTTGTATTTTCTAATAACCAGTACCCTAGTTATTTTTTTGCCATTGTCTT  50
      ||||||||| |  |||||||| ||||||||||  ||||||||| ||||||
seq2  TTTGTATTTCC--ATAACCAG-ACCCTAGTTA--TTTTTGCCA-TGTCTT  44

seq1  CATCTACTACTTTAGGTGTGTTTGTACCTTTTATATACACATTTCGTATA  100
      |||| ||||| ||||||| ||||| |||  ||||  ||||| |||| |||
seq2  CATC-ACTAC-TTAGGTGGGTTTGAACC--TTATTAACACA-TTCG-ATA  88

seq1  TATCTGGTATAAATTAAATACATTGGTTTAGTATAAGTTCTTTGCTTTTA  150
       |||||||||||| ||||| || |||||||||||||| || |||||||  
seq2  -ATCTGGTATAAA-TAAAT-CA-TGGTTTAGTATAAG-TCCTTGCTTT--  131

seq1  AGTTACAGGGTGTGGATTTTTTGTACTATTTAAAATGAAGGTCTGACCTA  200
      || |||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  AG-TACAGGGTGTGGATTTTTTG-ACTATTTAAAATGAAAGTCTGACCTA  179

seq1  TGAGTCATTGCCTTGGACAACACAAAGGCCACTTTCAGCATTATTGCTTG  250
      ||||||| |||||||||| |||||||||||||||||||||||| ||||||
seq2  TGAGTCA-TGCCTTGGAC-ACACAAAGGCCACTTTCAGCATTA-TGCTTG  226

seq1  CAGTCATTGCAGACTGTCAAGTCAGAAGTGAAAGATTTCATAACTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTGCAGACTGTCAAGTCAGAAGTGAAAGATTTCATAACTTATTC  276

seq1  TTGAACTCAAACAGTATTTCCAAGTCAGATTTTTTTATTGTGTTTAAG-A  349
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGAACTCAAACAGTATTTCCAAGTCAGATTTTTTTATTGTGTTTAAGAA  326

seq1  AAAACAGCATAAAATTCCCAAGTCTCCAATGTCAGTTCCTGAAGTAAGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCATAAAATTCCCAAGTCTCCAATGTCAGTTCCTGAAGTAAGTA  376

seq1  GAAAACCTGCCAAATATGACCTTCTTAAACAACATATCTCTCTCTCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGCCAAATATGACCTTCTTAAACAACATATCTCTCTCTCTTTT  426

seq1  TTTTCCAGAGGAAAACTGTAAAGATCAAGTCTCAGCTGCACATAGTACCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGAGGAAAACTGTAAAGATCAAGTCTCAGCTGCACATAGTACCT  476

seq1  AATTAAACAAGTGTAAGAAAGCTGAGAAAGGTCAGGTTGTCAAAAATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAAGTGTAAGAAAGCTGAGAAAGGTCAGGTTGTCAAAAATCAT  526

seq1  TGCTGTATCTTTACTGAATTGTATTTAAAGACTGATTGCAGCAAAGAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATCTTTACTGAATTGTATTTAAAGACTGATTGCAGCAAAGAAAA  576

seq1  TAACTCAATAAGGTCTGTGAGCCTGGAATATTACATGAACTCAAGGGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAATAAGGTCTGTGAGCCTGGAATATTACATGAACTCAAGGGGCA  626

seq1  GGCTTCTTCCTGGCATATAACAGAGCATTTCAAGAAAAAAAAAAAAAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCCTGGCATATAACAGAGCATTTCAAGAAAAAAAAAAAAAACT  676

seq1  AGGAAACAAACTGAAATCTGAATCTGAAAGGAAGAACATATGTGCTGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAAACTGAAATCTGAATCTGAAAGGAAGAACATATGTGCTGGGT  726

seq1  GAGACAGACAGCTAAATATTAATATAGAGAAGAGCTTCAATATGCCAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGACAGCTAAATATTAATATAGAGAAGAGCTTCAATATGCCAGGT  776

seq1  TCAAGGAAAAACAAGACAAAATTACAAATGACAGATTTTTATTTGATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAAAACAAGACAAAATTACAAATGACAGATTTTTATTTGATTTT  826

seq1  TTCCTTTTTAATTAATGAATAAATTGAATAGGCTAATAAAATATACTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTAATTAATGAATAAATTGAATAGGCTAATAAAATATACTGTA  876

seq1  AGAGGAGTCACTCATAATTATATAGCCAAGATTAAGTAATTAAGGGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTCACTCATAATTATATAGCCAAGATTAAGTAATTAAGGGAAAA  926

seq1  TTAGTTATTTTATCTCCTGAAAATATTGGTAATTACCTGTATGCACTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATTTTATCTCCTGAAAATATTGGTAATTACCTGTATGCACTCTG  976

seq1  AACTCCCTAGTGTTCATATGTTTGTTTGAAGGGCCTTTGAATGTATTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTAGTGTTCATATGTTTGTTTGAAGGGCCTTTGAATGTATTTTG  1026

seq1  CTTCTATTCTACTTCTGCCATAGGAACAGAAGAGAGAGATGAGTCTAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTCTACTTCTGCCATAGGAACAGAAGAGAGAGATGAGTCTAAAG  1076

seq1  AGATAAGCCACAACAAACCAAAGTATGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  AGATAAGCCACAACAAACCAAAGTATGAATTC  1108