BAC Information

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BAC

Clone NameB6Ng01-140C23
Chromosome4 (Build37)
Map Location 107,566,089 - 107,567,043
singlet/doubletsinglet
Overlap gene0610037L13Rik
Upstream geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh
Downstream geneCpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C23.bB6Ng01-140C23.g
ACCDH938983DH938984
length9541,178
definitionDH938983|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C23, 5' end.DH938984|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccatcttgcttttcccttcttgttctagcactgagctacaaca
caaatcaggaagtctatgaatagtaactgtcacgtatgaaatgcctactg
tgtgctgtgttccatgcccatcacctttctgtgctacttcatttcatcct
cactgtaacctaaacagtgattcatcctagtctttagacaagggaacttc
agagactgtagtgtgccagagtccgttagtaagcaggggctggatttgaa
cccaggtctgtctgaatcttatagtcagtgctcatcctcttgtttgtaca
tttttactcacagtaaatctgtggggtaagttagaaaagatggtatcggc
atccccatctcataaacaaaatcacagataaaaagtttaaggccagcctg
gaatccctgaggacctgtctcaaaaaacaaataaaacccaggttcagagc
caggcatagtgcattccacctataatcccagcactcaagaggctgaggca
ggtggatttctattgagttcaaagacaacccagtgtacatagcaagttcc
aggaatgccagatatatcagagagaccctgtctcaccaaataaatacccc
acaaactaaggttcagagagggagtggggtgcatacccaggtccttgagc
agatagagtgatgggagagcttacccccactccggcctttaacttggttt
tttgataacacaaactagaaccacctgagtagggaccctcaactggagaa
cggtcccaattgctatataagaaaaatagctgaggctagacatggttaca
cacctttaatcccagcacttgaggggcagaggcaggtggatctctgtgag
ctcaaaaccagcctggtttacatagtaagttccaggtcaaccagaactac
atagtgagacactgtctcaagagagggcgtacggggagggagagagggag
gaga
gaattcctgtttgggggctcaagaaaattagaaaaaaatttaagaaagca
agctgtagcacttgttgtctagtttctgtgttgggaaagtttggggctta
actgaagtctggattggaacggtctgaaaggctgggtgagctgaggtcat
ccgggattcgcagtccttcttgaagctgatctagaagaaagtctctagga
acagcatcagcctgaggcaggaccaagcagggatctgaaatctcagcatc
cccaagggtgactcctgtcagggctgctctcctggtcctttattttgcaa
tatacaaagctgagttttataaagacattggtatgggatgcgcaggaaac
acagatcaatcaaggatgatttcctgatctttgtttgagcaggtaaaaga
caactgtatttctttagaagtcagtttgatcacataatcaaactgcacta
taattctccattcatgcccgatgaaagaatggtgtttagtaataagttgc
aagaactttgtagccaacaagatttattggccaaatgtagacatttaagt
ctcagccagtcccatagctgtctccatcgacagagatcagtgtgaacatc
acctattttgtttatcttgtcaatctccctcttcttgtccatagataacc
tcttcaggagggcctctctttgtcatgtctgatttttatcaatttggaag
gaactcacagcttttcttttcctgtggaaatacaggcataacctctccct
cagtgtaacatattccatgttttccattctgaggttaggacatctttaaa
ataaacagcctgctttagtttgagaggccagatcttttgtatttagactc
tatcttagagaacctgacctaagttaactaacaggccagtacttgcacca
gtttccaggttaactcctaacaaacctgtatctagcaccagtaccaggtt
atccccaacaaaactgtgtctagcacactttcccggtattccccaacaat
ctgcacttcaggttacaagctccctctggccttcactctacacatcatca
ggaaaaagcgaagtatgctggttcccgaacagccatcaatgtaaggacat
aatgcccaatacaagtgtacaggtagaaatctctcttgcttgtaaatgac
cagatgtcatgactaggactgcgacgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107566089_107567043
seq2: B6Ng01-140C23.b_45_998

seq1  GAATTCTCCATCTTGCTTTTCCCTTCTTGTTCTAGCACTGAGCTACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTTGCTTTTCCCTTCTTGTTCTAGCACTGAGCTACAACA  50

seq1  CAAATCAGGAAGTCTATGAATAGTAACTGTCACGTATGAAATGCCTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGGAAGTCTATGAATAGTAACTGTCACGTATGAAATGCCTACTG  100

seq1  TGTGCTGTGTTCCATGCCCATCACCTTTCTGTGCTACTTCATTTCATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGTTCCATGCCCATCACCTTTCTGTGCTACTTCATTTCATCCT  150

seq1  CACTGTAACCTAAACAGTGATTCATCCTAGTCTTTAGACAAGGGAACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAACCTAAACAGTGATTCATCCTAGTCTTTAGACAAGGGAACTTC  200

seq1  AGAGACTGTAGTGTGCCAGAGTCCGTTAGTAAGCAGGGGCTGGATTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGTAGTGTGCCAGAGTCCGTTAGTAAGCAGGGGCTGGATTTGAA  250

seq1  CCCAGGTCTGTCTGAATCTTATAGTCAGTGCTCATCCTCTTGTTTGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCTGTCTGAATCTTATAGTCAGTGCTCATCCTCTTGTTTGTACA  300

seq1  TTTTTACTCACAGTAAATCTGTGGGGTAAGTTAGAAAAGATGGTATCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTCACAGTAAATCTGTGGGGTAAGTTAGAAAAGATGGTATCGGC  350

seq1  ATCCCCATCTCATAAACAAAATCACAGATAAAAAGTTTAAGGCCAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATCTCATAAACAAAATCACAGATAAAAAGTTTAAGGCCAGCCTG  400

seq1  GAATCCCTGAGGACCTGTCTCAAAAAACAAATAAAACCCAGGTTCAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTGAGGACCTGTCTCAAAAAACAAATAAAACCCAGGTTCAGAGC  450

seq1  CAGGCATAGTGCATTCCACCTATAATCCCAGCACTCAAGAGGCTGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATAGTGCATTCCACCTATAATCCCAGCACTCAAGAGGCTGAGGCA  500

seq1  GGTGGATTTCTATTGAGTTCAAAGACAACCCAGTGTACATAGCAAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTCTATTGAGTTCAAAGACAACCCAGTGTACATAGCAAGTTCC  550

seq1  AGGAATGCCAGATATATCAGAGAGACCCTGTCTCACCAAATAAATACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCCAGATATATCAGAGAGACCCTGTCTCACCAAATAAATACCCC  600

seq1  ACAAACTAAGGTTCAGAGAGGGAGTGGGGTGCATACCCAGGTCCTTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAAGGTTCAGAGAGGGAGTGGGGTGCATACCCAGGTCCTTGAGC  650

seq1  AGATAGAGTGATGGGAGAGCTTACCCCCACTCCGGCCTTTAACTTGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGTGATGGGAGAGCTTACCCCCACTCCGGCCTTTAACTTGGTTT  700

seq1  TTTGATAACACAAACTAGAACCACCTGAGTAGGGACCCTCAACTGGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACACAAACTAGAACCACCTGAGTAGGGACCCTCAACTGGAGAA  750

seq1  CGGTCCCAATTGCTATATAAGAAAAATAGCTGAGGCTAGACATGGTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCCAATTGCTATATAAGAAAAATAGCTGAGGCTAGACATGGTTACA  800

seq1  CACCTTTAATCCCAGCACTTGAGGGGCAGAGGCAGGTGGATCTCTGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATCCCAGCACTTGAGGGGCAGAGGCAGGTGGATCTCTGTGAG  850

seq1  CTCAAAACCAGCCTGGTTTACATAGTAAGTTCCAGGTCAACCAGAACTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACCAGCCTGGTTTACATAGTAAGTTCCAGGTCAACCAGAACTAC  900

seq1  ATAGTGAGACACTGTCTCAAGAGAGGGCGTACGGGGGAGGGAGAGAGGGA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAGTGAGACACTGTCTCAAGAGAGGGCGTAC-GGGGAGGGAGAGAGGGA  949

seq1  GGAGA  955
      |||||
seq2  GGAGA  954