BAC Information

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BAC

Clone NameB6Ng01-140D03
Chromosome4 (Build37)13 (Build37)
Map Location 12,585,737 - 12,586,75776,594,449 - 76,594,574
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D03.bB6Ng01-140D03.g
ACCDH938991DH938992
length1,018394
definitionDH938991|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D03, 5' end.DH938992|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,585,737 - 12,586,757)(76,594,449 - 76,594,574)
sequence
tctctacaaagagaggtgacagaagttctgcctcttatctgttttttttt
cctctttaccctcccccagcccccaaatccagacccatccgagagaggag
cagtaagtgatgagctgaagtatttagtaagctaatgtgcagtgtccaca
gcagggggcctgcacagcttggctgatgagaaatgaactgcctgcagcaa
tcttttaatggcaactaacttcccatgtttgattcccagcttagccaact
catttacagttcaagcgtgacagggcatccccggcaccttttgtagcttt
ccgtctgagaagccgaacaatgtgttcagggccccagtgaccctctgaga
tcttgtcttgatgatttcgaacctctctttgcttgcctagggtcagtgat
cctataaaagaagaagagtttaaggataagcgactttaactggagctctg
tctcattttagttctgattttgggtatgttagtgatgggaattgttgaat
aacaaacgagaaatgcaaaggaagactctttcaagaaattgtctatctta
cccttaatattttcattttctttttgttccccccaaaaaggttttatatc
cattggtcttttaaattcttaatgcatttaaggtatctaatgtgtattaa
gctcctccatctttgccttaaacaaatcctattactctgtgattctatcc
tattacacagtgattactgaacagagctcaacttaattggatatgatcat
gtcctgctatgaagaattatctgggaaagtttctatttttcattgctgcc
agcagctttattttatatgtaacttttaaagtatctacagatgttataca
ttgttttaataagagttctaaaacatctctaactttttttttatatagca
caatagattcagcagagaatattcaaagaaatacttggttgcagtttcat
agataagagacaggaaaagggaggcacttaatgaatactagtgttctggt
tttttcttagtttatgca
gaattcaaggcccatacttgaacatgataaaagcaatctacagcaagcca
gtagccaacatcaaagtaaatggcaagaagacggaagcattcctactaaa
attagggactagacaaggctgcccactttctccctacctattcaacattg
tacttgaagtccaggtagagcaattcgacaacaaaaaaagatcaagggaa
tagaaattggaaaggaagaagttaaaatatcactttttgcagatgatatg
atagtatacacacacacacacacacacacacatatatatgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtatatactctgcaaaaagagagagagagac
ttcttcctttcctttttctatttctttgatcttttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12585737_12586757
seq2: B6Ng01-140D03.b_53_1070

seq1  TCTCTACAAAGAGAGGTGACAGAAGTTCTGCCTCTTATCTGTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAAAGAGAGGTGACAGAAGTTCTGCCTCTTATCTGTTTTTTTTT  50

seq1  CCTCTTTACCCTCCCCCAGCCCCCAAATCCAGACCCATCCGAGAGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTACCCTCCCCCAGCCCCCAAATCCAGACCCATCCGAGAGAGGAG  100

seq1  CAGTAAGTGATGAGCTGAAGTATTTAGTAAGCTAATGTGCAGTGTCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTGATGAGCTGAAGTATTTAGTAAGCTAATGTGCAGTGTCCACA  150

seq1  GCAGGGGGCCTGCACAGCTTGGCTGATGAGAAATGAACTGCCTGCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGGCCTGCACAGCTTGGCTGATGAGAAATGAACTGCCTGCAGCAA  200

seq1  TCTTTTAATGGCAACTAACTTCCCATGTTTGATTCCCAGCTTAGCCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAATGGCAACTAACTTCCCATGTTTGATTCCCAGCTTAGCCAACT  250

seq1  CATTTACAGTTCAAGCGTGACAGGGCATCCCCGGCACCTTTTGTAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAGTTCAAGCGTGACAGGGCATCCCCGGCACCTTTTGTAGCTTT  300

seq1  CCGTCTGAGAAGCCGAACAATGTGTTCAGGGCCCCAGTGACCCTCTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTGAGAAGCCGAACAATGTGTTCAGGGCCCCAGTGACCCTCTGAGA  350

seq1  TCTTGTCTTGATGATTTCGAACCTCTCTTTGCTTGCCTAGGGTCAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTTGATGATTTCGAACCTCTCTTTGCTTGCCTAGGGTCAGTGAT  400

seq1  CCTATAAAAGAAGAAGAGTTTAAGGATAAGCGACTTTAACTGGAGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAAGAAGAAGAGTTTAAGGATAAGCGACTTTAACTGGAGCTCTG  450

seq1  TCTCATTTTAGTTCTGATTTTGGGTATGTTAGTGATGGGAATTGTTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTAGTTCTGATTTTGGGTATGTTAGTGATGGGAATTGTTGAAT  500

seq1  AACAAACGAGAAATGCAAAGGAAGACTCTTTCAAGAAATTGTCTATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACGAGAAATGCAAAGGAAGACTCTTTCAAGAAATTGTCTATCTTA  550

seq1  CCCTTAATATTTTCATTTTCTTTTTGTTCCCCCCAAAAAGGTTTTATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATATTTTCATTTTCTTTTTGTTCCCCCCAAAAAGGTTTTATATC  600

seq1  CATTGGTCTTTTAAATTCTTAATGCATTTAAGGTATCTAATGTGTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTCTTTTAAATTCTTAATGCATTTAAGGTATCTAATGTGTATTAA  650

seq1  GCTCCTCCATCTTTGCCTTAAACAAATCCTATTACTCTGTGATTCTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCATCTTTGCCTTAAACAAATCCTATTACTCTGTGATTCTATCC  700

seq1  TATTACACAGTGATTACTGAACAGAGCTCAACTTAATTGGATATGATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACAGTGATTACTGAACAGAGCTCAACTTAATTGGATATGATCAT  750

seq1  GTCCTGCTATGAAGAATTATCTGGGAAAGTTTCTATTTTTCATTGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTATGAAGAATTATCTGGGAAAGTTTCTATTTTTCATTGCTGCC  800

seq1  AGCAGCTTTATTTTATATGTAACTTTTAAAGTATCTACAGATGTTATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTTATTTTATATGTAACTTTTAAAGTATCTACAGATGTTATACA  850

seq1  TTGTTTTAATAAGAGTTCTAAAACATCTCTAAC-TTTTTTTTATATAGCC  899
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TTGTTTTAATAAGAGTTCTAAAACATCTCTAACTTTTTTTTTATATAG-C  899

seq1  ACAATAGATTCAGCAGAGAATATTCAAAG-AATACTTGGTTGCAAGTTAC  948
      ||||||||||||||||||||||||||||| ||||||||||||| |||| |
seq2  ACAATAGATTCAGCAGAGAATATTCAAAGAAATACTTGGTTGC-AGTTTC  948

seq1  ATAGATAAAGAGACAGGAAAAGGGAGGCACTTAATGAATACTAGTGTTCT  998
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAT-AAGAGACAGGAAAAGGGAGGCACTTAATGAATACTAGTGTTCT  997

seq1  GGTCTTTTCTTTAAGTTTATGCA  1021
      ||| |||||||  ||||||||||
seq2  GGTTTTTTCTT--AGTTTATGCA  1018

seq1: chr13_76594449_76594574
seq2: B6Ng01-140D03.g_322_462

seq1  GTATACACACACACACACACACACACACA---------------------  29
      |||||||||||||||||||||||||||||                     
seq2  GTATACACACACACACACACACACACACATATATATGTGTGTGTGTGTGT  50

seq1  -----------------CACACACAC-ACACACACACACACACACACTTT  61
                        | | || |  || | | | | | | | || ||
seq2  GTGTGTGTGTGTGTGTGTATATACTCTGCAAAAAGAGAGAGAGAGAC-TT  99

seq1  CTTCCACAAGGTTAAAAATGCTTTGCTCCTATTTTAACCATACTATACCT  111
      |||||      ||     | ||||  | ||||||        || |    
seq2  CTTCC------TT-----TCCTTT--TTCTATTT--------CTTT--GA  126

seq1  TCTTTTTTTTTTTTT  126
      |||||||||||||||
seq2  TCTTTTTTTTTTTTT  141