BAC Information

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BAC

Clone NameB6Ng01-140E21
Chromosome4 (Build37)3 (Build37)
Map Location 59,243,781 - 59,244,31541,059,468 - 41,059,732
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMusk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg
Downstream geneLOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E21.bB6Ng01-140E21.g
ACCDH939072DH939073
length529266
definitionDH939072|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E21, 5' end.DH939073|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,243,781 - 59,244,315)(41,059,468 - 41,059,732)
sequence
ttcaggcagccatggcccagctgctacaataatttgaaccagcagtcact
ggggctagaagccaggatttttcttttgacatttttttagggggtgtgta
tttctgctttcatataagaatgctgacctttccttctgtgtcactggcat
tgatagagttgattagattctcccagagatgaccactgtaagggagtaag
gtgtccagtcatgacctctcatccccaaatgccaagcaaattgctttctc
ttagcattgttggtctctgcatttggaggctaagttgaaagagacatatt
gacttatagctacacgtgtagaaccccagtgacttcatgggttgttatgt
tcccagaattcaccagggctgggcaggtacaggcctgctggcctgaatca
gcaggactgtgcagggcagaatgcctacccctccattctgcagcttccgg
tcagttgtcaaagacagagcagccatacttttctccctatgttttttttt
ttttctttttttggggtgggggaggtttg
tttgtttagctctgagccccattttttaatggggttatttgattttctgg
agtccaccttcttgagttctttatatatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggcctttttgt
cttattgacggtgtcttttgccttacagaagctttgcagtttcatgaggt
cccatttgtcaattcttgatcttacagcacaagccattgctgttctattc
aggaattttccccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59243781_59244315
seq2: B6Ng01-140E21.b_47_581 (reverse)

seq1  CAAACCTCCCCCACCCCAAAAAAAGAAAAAAAAAAAAACATAGGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCCCCCACCCCAAAAAAAGAAAAAAAAAAAAACATAGGGAGAAA  50

seq1  AGTATGGCTGCTCTGTCTTTGACAACTGACCGGAAGCTGCAGAATGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGCTGCTCTGTCTTTGACAACTGACCGGAAGCTGCAGAATGGAGG  100

seq1  GGTAGGCATTCTGCCCTGCACAGTCCTGCTGATTCAGGCCAGCAGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCATTCTGCCCTGCACAGTCCTGCTGATTCAGGCCAGCAGGCCTG  150

seq1  TACCTGCCCAGCCCTGGTGAATTCTGGGAACATAACAACCCATGAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCCCAGCCCTGGTGAATTCTGGGAACATAACAACCCATGAAGTCA  200

seq1  CTGGGGTTCTACACGTGTAGCTATAAGTCAATATGTCTCTTTCAACTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTCTACACGTGTAGCTATAAGTCAATATGTCTCTTTCAACTTAG  250

seq1  CCTCCAAATGCAGAGACCAACAATGCTAAGAGAAAGCAATTTGCTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATGCAGAGACCAACAATGCTAAGAGAAAGCAATTTGCTTGGCA  300

seq1  TTTGGGGATGAGAGGTCATGACTGGACACCTTACTCCCTTACAGTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGATGAGAGGTCATGACTGGACACCTTACTCCCTTACAGTGGTCA  350

seq1  TCTCTGGGAGAATCTAATCAACTCTATCAATGCCAGTGACACAGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGAGAATCTAATCAACTCTATCAATGCCAGTGACACAGAAGGAA  400

seq1  AGGTCAGCATTCTTATATGAAAGCAGAAATACACACCCCCTAAAAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCATTCTTATATGAAAGCAGAAATACACACCCCCTAAAAAAATG  450

seq1  TCAAAAGAAAAATCCTGGCTTCTAGCCCCAGTGACTGCTGGTTCAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAAAATCCTGGCTTCTAGCCCCAGTGACTGCTGGTTCAAATTA  500

seq1  TTGTAGCAGCTGGGCCATGGCTGCCTGAAGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  TTGTAGCAGCTGGGCCATGGCTGCCTGAAGAATTC  535

seq1: chr3_41059468_41059732
seq2: B6Ng01-140E21.g_73_338 (reverse)

seq1  CAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTG  50
      |||||| |||||||||| ||||||||||||||||||||||||||||||  
seq2  CAGGGGGAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCA  50

seq1  AGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAA  100
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGTAAGGCAAA  100

seq1  AGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCT  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCT  150

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAA  199
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAA  200

seq1  CTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGG  250

seq1  CTCAGAGCTAAACAAA  265
      ||||||||||||||||
seq2  CTCAGAGCTAAACAAA  266