BAC Information

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BAC

Clone NameB6Ng01-140F19
Chromosome4 (Build37)
Map Location 148,443,015 - 148,569,785
singlet/doubletdoublet
Overlap genePex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b
Upstream geneAgtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
Downstream geneLOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140F19.bB6Ng01-140F19.g
ACCDH939113DH939114
length1,1161,005
definitionDH939113|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F19, 5' end.DH939114|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,443,015 - 148,444,155)(148,568,774 - 148,569,785)
sequence
gaattccacaagtatgccagcgaagcctaaataaataaataaataaatgt
gaaacaataatttttttaatgtacatgcaaaagccaggcatgatgggaaa
ctgaggcaagaggatcccaagtccaaggccagttcaaggccagcctggac
tagtgagaccctatctaaaaaaaaaagaacataaacagagaagctggaac
aaaaggagactacggaagagggaagcactgttgtgtgaatgtttattccc
cctctccacagccatctccagtgaagtgtgacagaaaatgaaaccattta
tacacacacgtaacttgcaagctggattctgtcggcaactaagctcacgg
ctaccacaaggctagaaaaagaggccctaagccagagatgctctcggtgt
gtgtctagctgagtcagggctgacctcagggagcgagaggcctcctgaaa
gatcccttggtgaaagggacatcagccacctgagcttaccctgagactgc
gagcaggagctgcagccccggtggcttccaggcaacgagtcacaaaggtg
gcagtgcaagggtcttcttccctgagaagaagtgtgaactgaggtgagaa
gaaggcaattcacctcacacacgctccactgggggccatgtgttagcgcc
tctctgctccaactgtcaaaggtgcccccagatagatttacctcagaatc
actcagtgtcagcccatctcgagactgctcggacaaactcgtaatggcag
agagaagatttgtggagcaacaagcataaatcttggttataactacaaac
cataaaagaaaggagagctgggagggaagagggaagggcggcagacacgt
ccttctcccaagcaccactttatcttccagcagctctgcaccacgcaccc
aggattaactaggggacatatttttcaagcccaatcagtctgtgcagttt
gacatggctcaaacattttaaatggaaattactctgaaatgtggggcaca
tgctatcctagacagcatggcaatgctcttcgaggacacggggttcagtt
gccccaggacactcacctgtaagccactaagatgttatacagaacatttc
aagctagatatgatca
gaattctccgttcattgtttgtcctctgaaattcagttcgcttcttagca
ttattttgccctttttaaaaaatattttttctctgtgtgtttctatttct
tcgtatatatttgtttgtttttctttctgtctgtcttttggttgctggac
taacgaaggcattttctgtttctgcaggctcttgcttgataaggatattc
ctaggtactttctgtttgcttttttttttttttttttttttaatttattt
attaattatatgtaagtacactgtagctgacttcagacactccagaagag
ggtgtcagatctcgttacggatggttgtgagccaccatgtggttgctggg
atttgaactccggaccttcggaagaacagtcgggtgctcttacccactga
gccatctcaccagccccctgtttgcttttttgctcctagagattctagtt
taccagctttatgtcttctgttgctttggttcctgttttaatccagtagt
ttctttcctgcataaacctaagctttacctagaacagagcacgacctttt
ttgtagcctaagaatgcccccagagctgtctgtcctgatgtgtgtacagc
ttcggatgtaacttctccaatgacttagtgctaaattattgtctcattcc
atttactacattttaaacacctcttcaggttgttcttttttacattctaa
aatagaatcttttacatctcccgtgatatctcaggctttgtttttctgac
attctctcttcctttccccctcgctctaccccacctctttcatagcttgg
aaagtttgcttgcagatcacacttacttcattttgctctgtgcctactcc
acggagagcagatatgattctttaggagttgagtctgcaagaaaaaattg
ttgttagttaaaaaaaaaaaactagtcttaccgttagaccaggtgggcct
tgaactccaggattctcctgcgttgttcagagatcaagtttaaggcttgt
gaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_148443015_148444155
seq2: B6Ng01-140F19.b_45_1160

seq1  GAATTCCACAAGTATGCCAGCGAAGCCTAAATAAATAAATAAATAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGTATGCCAGCGAAGCCTAAATAAATAAATAAATAAATGT  50

seq1  GAAACAATAATTTTTTTAATGTACATGCAAAAGCCAGGCATGATGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATAATTTTTTTAATGTACATGCAAAAGCCAGGCATGATGGGAAA  100

seq1  CTGAGGCAAGAGGATCCCAAGTCCAAGGCCAGTTCAAGGCCAGCCTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAAGAGGATCCCAAGTCCAAGGCCAGTTCAAGGCCAGCCTGGAC  150

seq1  TAGTGAGACCCTATCTAAAAAAAAAAGAACATAAACAGAGAAGCTGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGACCCTATCTAAAAAAAAAAGAACATAAACAGAGAAGCTGGAAC  200

seq1  AAAAGGAGACTACGGAAGAGGGAAGCACTGTTGTGTGAATGTTTATTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGACTACGGAAGAGGGAAGCACTGTTGTGTGAATGTTTATTCCC  250

seq1  CCTCTCCACAGCCATCTCCAGTGAAGTGTGACAGAAAATGAAACCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCACAGCCATCTCCAGTGAAGTGTGACAGAAAATGAAACCATTTA  300

seq1  TACACACACGTAACTTGCAAGCTGGATTCTGTCGGCAACTAAGCTCACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACGTAACTTGCAAGCTGGATTCTGTCGGCAACTAAGCTCACGG  350

seq1  CTACCACAAGGCTAGAAAAAGAGGCCCTAAGCCAGAGATGCTCTCGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACAAGGCTAGAAAAAGAGGCCCTAAGCCAGAGATGCTCTCGGTGT  400

seq1  GTGTCTAGCTGAGTCAGGGCTGACCTCAGGGAGCGAGAGGCCTCCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAGCTGAGTCAGGGCTGACCTCAGGGAGCGAGAGGCCTCCTGAAA  450

seq1  GATCCCTTGGTGAAAGGGACATCAGCCACCTGAGCTTACCCTGAGACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTGGTGAAAGGGACATCAGCCACCTGAGCTTACCCTGAGACTGC  500

seq1  GAGCAGGAGCTGCAGCCCCGGTGGCTTCCAGGCAACGAGTCACAAAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAGCTGCAGCCCCGGTGGCTTCCAGGCAACGAGTCACAAAGGTG  550

seq1  GCAGTGCAAGGGTCTTCTTCCCTGAGAAGAAGTGTGAACTGAGGTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAAGGGTCTTCTTCCCTGAGAAGAAGTGTGAACTGAGGTGAGAA  600

seq1  GAAGGCAATTCACCTCACACACGCTCCACTGGGGGCCATGTGTTAGCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAATTCACCTCACACACGCTCCACTGGGGGCCATGTGTTAGCGCC  650

seq1  TCTCTGCTCCAACTGTCAAAGGTGCCCCCAGATAGATTTACCTCAGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCCAACTGTCAAAGGTGCCCCCAGATAGATTTACCTCAGAATC  700

seq1  ACTCAGTGTCAGCCCATCTCGAGACTGCTCGGACAAACTCGTAATGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGTCAGCCCATCTCGAGACTGCTCGGACAAACTCGTAATGGCAG  750

seq1  AGAGAAGATTTGTGGAGCAACAAGCATAAATCTTGGTTATAACTACAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGATTTGTGGAGCAACAAGCATAAATCTTGGTTATAACTACAAAC  800

seq1  CATAAAAGAAAGGAGAGCTGGGAGGGAAGAGGGAAGGGCGGCAGACACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAAGGAGAGCTGGGAGGGAAGAGGGAAGGGCGGCAGACACGT  850

seq1  CCTTCTCCCAAGCACCACTTTATCTTCCAGCAGCTCTGCACCACGCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCCAAGCACCACTTTATCTTCCAGCAGCTCTGCACCACGCACCC  900

seq1  AGGATTAACTAGGGGACATATTTTTCAAGCCCAATCAGTCTGTGCAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAACTAGGGGACATATTTTTCAAGCCCAATCAGTCTGTGCAGTTT  950

seq1  GACAATGGGCTCAAACATTTTAAATGGAAATTACTCTGGAAATGTGGGGC  1000
      ||||   |||||||||||||||||||||||||||||| ||||||||||||
seq2  GACA--TGGCTCAAACATTTTAAATGGAAATTACTCT-GAAATGTGGGGC  997

seq1  ACATGGCTATCCTAAGAACAGCATGGGCAATGCTCTTCAGAGGACCACGG  1050
      |||| |||||||||   ||||||| ||||||||||||| ||||| ||| |
seq2  ACAT-GCTATCCTA--GACAGCAT-GGCAATGCTCTTC-GAGGA-CAC-G  1040

seq1  GGGTTCCAAGTTTGCCCCAGGAACACCCACCCTGTAGGCCACACTAAAAG  1100
      ||||||  || |||||||||| |||| || |||||| |||||     |||
seq2  GGGTTC--AG-TTGCCCCAGG-ACACTCA-CCTGTAAGCCAC----TAAG  1081

seq1  ATGTTTATACAGGAACAATTTTTCAAGCTAGATAATGATCA  1141
      ||| ||||||| |||||   ||||||||||||| |||||||
seq2  ATG-TTATACA-GAACA---TTTCAAGCTAGAT-ATGATCA  1116

seq1: chr4_148568774_148569785
seq2: B6Ng01-140F19.g_67_1071 (reverse)

seq1  CTTTCACAAGCCTTTAACCTTGATACTCTGGACAGAGGCAGGAGAATCCT  50
      |||||||||||| |||| |||||| ||||| ||| | |||||||||||||
seq2  CTTTCACAAGCC-TTAAACTTGAT-CTCTGAACA-ACGCAGGAGAATCCT  47

seq1  GGGAGTTCAAGGCCAACCTGGTCTAACCGGTGAGACTATGTTTTTTTTTT  100
       ||||||||||||| ||||||||||| |||| ||||||        ||||
seq2  -GGAGTTCAAGGCCCACCTGGTCTAA-CGGTAAGACTA-------GTTTT  88

seq1  TTTTTTTTAACTAACAAC-ATTTTTTCTTGCAGACTCAACTCCTAAAGAG  149
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TTTTTTTTAACTAACAACAATTTTTTCTTGCAGACTCAACTCCTAAAGAA  138

seq1  TCA-ATCTGCTCTCCGTGGAGTAGGCACAGAGCAAAATGAAGTAAGTGTG  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTGCTCTCCGTGGAGTAGGCACAGAGCAAAATGAAGTAAGTGTG  188

seq1  ATCTGC-AGCAAACTTTCCAAGCTATGAAAGAGGTGGGGTAGAGCGAGGG  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAGCAAACTTTCCAAGCTATGAAAGAGGTGGGGTAGAGCGAGGG  238

seq1  GG-AAGGAAGAGAGAATGTCAG-AAAACAAAGCCTGAGATATCACGGGAG  295
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAAAGGAAGAGAGAATGTCAGAAAAACAAAGCCTGAGATATCACGGGAG  288

seq1  ATGTAAAAGATTCTATTTTAGAATGTAAAAAAGAACAACCTGAAGAGGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAGATTCTATTTTAGAATGTAAAAAAGAACAACCTGAAGAGGTG  338

seq1  TTTAAAATGTAGTAAATGGAATGAGACAATAATTTAGCACTAAGTCATTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTAGTAAATGGAATGAGACAATAATTTAGCACTAAGTCATTG  388

seq1  GAGAAGTTACATCCGAAGCTGTACACACATCAGGACAGACAGCTCTGGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTACATCCGAAGCTGTACACACATCAGGACAGACAGCTCTGGGG  438

seq1  GCATTCTTAGGCTACAAAAAAGGTCGTGCTCTGTTCTAGGTAAAGCTTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTAGGCTACAAAAAAGGTCGTGCTCTGTTCTAGGTAAAGCTTAG  488

seq1  GTTTATGCAGGAAAGAAACTACTGGATTAAAACAGGAACCAAAGCAACAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGCAGGAAAGAAACTACTGGATTAAAACAGGAACCAAAGCAACAG  538

seq1  AAGACATAAAGCTGGTAAACTAGAATCTCTAGGAGCAAAAAAGCAAACAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAAAGCTGGTAAACTAGAATCTCTAGGAGCAAAAAAGCAAACAG  588

seq1  GGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCCGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCCGA  638

seq1  AGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCG  688

seq1  TAACGAGATCTGACACCCTCTTCTGGAGTGTCTGAAGTCAGCTACAGTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAGATCTGACACCCTCTTCTGGAGTGTCTGAAGTCAGCTACAGTGT  738

seq1  ACTTACATATAATTAATAAATAAATTAAAAAAAAAAAAAAAAAAAAAAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATATAATTAATAAATAAATTAAAAAAAAAAAAAAAAAAAAAAGC  788

seq1  AAACAGAAAGTACCTAGGAATATCCTTATCAAGCAAGAGCCTGCAGAAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAGTACCTAGGAATATCCTTATCAAGCAAGAGCCTGCAGAAAC  838

seq1  AGAAAATGCCTTCGTTAGTCCAGCAACCAAAAGACAGACAGAAAGAAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCCTTCGTTAGTCCAGCAACCAAAAGACAGACAGAAAGAAAAA  888

seq1  CAAACAAATATATACGAAGAAATAGAAACACACAGAGAAAAAATATTTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATATATACGAAGAAATAGAAACACACAGAGAAAAAATATTTTT  938

seq1  TAAAAAGGGCAAAATAATGCTAAGAAGCGAACTGAATTTCAGAGGACAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGGCAAAATAATGCTAAGAAGCGAACTGAATTTCAGAGGACAAA  988

seq1  CAATGAACGGAGAATTC  1012
      |||||||||||||||||
seq2  CAATGAACGGAGAATTC  1005