BAC Information

Click to search

BAC

Clone NameB6Ng01-140H17
ChromosomeX (Build37)4 (Build37)
Map Location 84,838,746 - 84,839,26117,817,582 - 17,818,746
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIl1rapl1
Downstream geneLOC667876, EG667883, LOC667891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140H17.bB6Ng01-140H17.g
ACCDH939201DH939202
length9331,154
definitionDH939201|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H17, 5' end.DH939202|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,838,746 - 84,839,261)(17,817,582 - 17,818,746)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatactattttt
tttaaagattttttattatgtattttcctcaattccatttccaatgctaa
tccaaaagtccctcatgccctccccctcactcccctccccacccattccc
actttttggcactggcattcctctgtactggggcatataaaggttgcgtg
tccaatgggcctctctttccagtgatggccgactaggccatcttttgata
catatgcagctagagtcaagagctccggggtactggttagttcataatgc
tgttgcacctgcagggttgcagatctctttagctccttggatactttctc
tagctcctccattgggggccctgtgatccatctagtagctgactgtgagc
atccacttatgtgtttgctaggccccagcctagtctcacaagagacagca
atatcagggtcctttcagcaaaatcttgctagtatatgcaatggtgtcat
cgtttggaggctaattatgggatggatccctggatatggcagtctctaga
tggtccatctttttgtctcagaacgaaagtttgtctctgtaactccttcc
atgggtgattgtttccaattctaagaaggggcaaagtgtccacactttgg
tcttcgatcttcttgagtttcatgtgttttgcaaattgtaacttatatct
cccatatactaagtttctgggctaatatccacttatcagtgagtacatat
catttgagttcccatatctgatttaggataggtaaagatcttttcccaat
ctgttggtggcctttttgtcttattgacagtgtcttttgccttacagaag
ctttgcaattttatgagttcccatttatcattt
gaattctatactttactagagatgaacttacatacttgttcatatatgtt
taatttagcaagaaaaatgtatcaacctacatattaattaacagaagaat
ggctaataaaaatgtattatacttacacgacagaattttgttcatccatg
aataaacttaaaattatgacatttgggaaaatgaatagaactgtaaaata
tattaaataatccaggcccgggaagataaacattacatatttttctcata
tataaatcttagcttctaaacattatgtatgtttgttaatatgacaatgt
gtgcagatggcagaaaaccataagagaccaaaggaaaaagaagcttacag
aagacagatattgagagaaaaagaagacataggctgtgacggtgtaagag
gaagatataggagcaagagtttaagcaaagatagaagcaggaagatggat
gggaggaaagtcagccaaaactaaatgtctacaataccattaggtaatct
gatatttttcaagctaatgttttatattttattctcactacatttttaaa
taaatctttccctctccccttgcactttctctccaaaaccatcactgcta
caaactctcaaattgaagaatgagctctcgtatcaattatccaacatgaa
atgctcagcctagaacaatatatacacaaaatatatacacaaaagtgaaa
aatgattgtattatggatttgtacatacatatacatttatgtatataaca
atcataataaaagaaaataaatttttaaaggaagacaagttctgtgaaac
atgacacttgtttttgataaatgcactgcttggttcagttacttctgcta
atacagacatccttcacatacagaaaccactatgtctatgaactgtccac
agcaaacaaagcaaatcacactgcttttcaaaccgtgtaatggtactgac
agtgctgcacgtgagccctgaaaaaaaatgttcaaacaaataagtgccag
tgtaacattaaatctggcttttaaaagtgaaatgtatgtatcaaagtgtc
ctcattcttttgtcacaaaaaggaataaccaaataaaatacctgaatgca
ctgttagttaatcttcataaacttggttcgtgaaaatcactttggaatgc
agct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_84838746_84839261
seq2: B6Ng01-140H17.b_55_548 (reverse)

seq1  GATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACATAAG  50
      ||||| ||||||||||||||||||| || |||||||||||||||||||||
seq2  GATATTGCTGTCTCTTGTGAGACTAGGCTGGGGCCTAGCAAACACATAAG  50

seq1  TGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGG  100
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  TGGATGCTCACAGTCAGCTACTAGATGGATCACAGGGCCCCCAATGGAGG  100

seq1  AGCTAGAGAAAGTATCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTG  150
      ||||||||||||||||||||||||||||| || ||||||||||  |||||
seq2  AGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGCAGGTG  150

seq1  GAACAACAATATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGC  200
       |||| || |||||||||||||||||||||||||||||| ||||||||||
seq2  CAACAGCATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGC  200

seq1  ATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGCAAAGAGAGGCCCA  250
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  250

seq1  TTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAA  300
      ||||||  |||| |||||||||||||||||||| |||| ||||| |||||
seq2  TTGGACACGCAACCTTTATATGCCCCAGTACAGAGGAATGCCAGTGCCAA  300

seq1  AAAGGGGGAGTGGGTGGGTAGGGGATTTTGGGGGTGGGTATGGGGGACTT  350
      |||| |||| |||||||| |||||| |  ||||| ||| ||| |||||||
seq2  AAAGTGGGAATGGGTGGGGAGGGGAGTGAGGGGGAGGGCATGAGGGACTT  350

seq1  TTGGGATAGCATTGGAAATGTAAACGAAGAAAATACCTAATAAAAAAAAC  400
      ||||  |||||||||||||| ||  || |||||||| ||||||||||   
seq2  TTGGATTAGCATTGGAAATGGAATTGAGGAAAATACATAATAAAAAATCT  400

seq1  TAAACTCTATGAAAATATAGTCTCACACAATGCTTCTTAAGTTTT----A  446
      | ||       |||| ||||| ||   ||||   | | |||   |    |
seq2  TTAA-------AAAAAATAGTATC---CAATATATATAAAGAACTCAAGA  440

seq1  ATGTGTAACCTATCCTTTAATATACTCAGGATCTTGCTATATAA---GAT  493
      | ||| |     |||   ||          |||     | ||||    ||
seq2  AGGTGGA----CTCCAGAAA----------ATC-----AAATAACCCCAT  471

seq1  TCTGATTTGGGGCTCAGAGCTAA  516
      |   |  ||||||||||||||||
seq2  TAAAAAATGGGGCTCAGAGCTAA  494

seq1: chr4_17817582_17818746
seq2: B6Ng01-140H17.g_68_1221 (reverse)

seq1  AGCTGCCATTCC-AAGTGATTTTTCACGAACACAGTTAATGATAGTATTA  49
      ||||| |||||| |||||| |||||||||||  |||| |||| || ||||
seq2  AGCTG-CATTCCAAAGTGA-TTTTCACGAACCAAGTTTATGA-AG-ATTA  46

seq1  ACTTAACAGTGCCATCAGGTAATTTTATTGGTTA-TCCTATTTGTGAACA  98
      || |||||||||  ||||||| |||  ||||||| |||| |||||| |||
seq2  AC-TAACAGTGCATTCAGGTATTTTATTTGGTTATTCCTTTTTGTG-ACA  94

seq1  AAAG-ATGAGGGCACTTTGATACATTACATTTCACTTTTTAAAAGGCCAA  147
      |||| |||||| |||||||||||| |||||||||| |||||||||  | |
seq2  AAAGAATGAGGACACTTTGATACA-TACATTTCAC-TTTTAAAAG--CCA  140

seq1  GATTTATTGTTAACAACTGGCACTAATTTGTTTGAACATTTTTTTTTTCA  197
      |||||| |||||   ||||||||| |||||||||||||  ||||||||||
seq2  GATTTAATGTTA--CACTGGCACTTATTTGTTTGAACA--TTTTTTTTCA  186

seq1  GGGCTCACGTGCAGCACTGTCAGTACCATTACACGGTTTGAAAAGCAGTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACGTGCAGCACTGTCAGTACCATTACACGGTTTGAAAAGCAGTG  236

seq1  TGATTTGCTTTGTTTGCTGTGGACAGTTCATAGACATAGTGGTTTCTGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCTTTGTTTGCTGTGGACAGTTCATAGACATAGTGGTTTCTGTA  286

seq1  TGTGAAGGATGTCTGTATTAGCAGAAGTAACTGAACCAAGCAGTGCATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGATGTCTGTATTAGCAGAAGTAACTGAACCAAGCAGTGCATTT  336

seq1  ATCAAAAACAAGTGTCATGTTTCACAGAACTTGTCTTCCTTTAAAAATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACAAGTGTCATGTTTCACAGAACTTGTCTTCCTTTAAAAATTT  386

seq1  ATTTTCTTTTATTATGATTGTTATATACATAAATGTATATGTATGTACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTATTATGATTGTTATATACATAAATGTATATGTATGTACAA  436

seq1  ATCCATAATACAATCATTTTTCACTTTTGTGTATATATTTTGTGTATATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAATACAATCATTTTTCACTTTTGTGTATATATTTTGTGTATATA  486

seq1  TTGTTCTAGGCTGAGCATTTCATGTTGGATAATTGATACGAGAGCTCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTAGGCTGAGCATTTCATGTTGGATAATTGATACGAGAGCTCATT  536

seq1  CTTCAATTTGAGAGTTTGTAGCAGTGATGGTTTTGGAGAGAAAGTGCAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTGAGAGTTTGTAGCAGTGATGGTTTTGGAGAGAAAGTGCAAG  586

seq1  GGGAGAGGGAAAGATTTATTTAAAAATGTAGTGAGAATAAAATATAAAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGAAAGATTTATTTAAAAATGTAGTGAGAATAAAATATAAAAC  636

seq1  ATTAGCTTGAAAAATATCAGATTACCTAATGGTATTGTAGACATTTAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTGAAAAATATCAGATTACCTAATGGTATTGTAGACATTTAGTT  686

seq1  TTGGCTGACTTTCCTCCCATCCATCTTCCTGCTTCTATCTTTGCTTAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGACTTTCCTCCCATCCATCTTCCTGCTTCTATCTTTGCTTAAAC  736

seq1  TCTTGCTCCTATATCTTCCTCTTACACCGTCACAGCCTATGTCTTCTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCCTATATCTTCCTCTTACACCGTCACAGCCTATGTCTTCTTTT  786

seq1  TCTCTCAATATCTGTCTTCTGTAAGCTTCTTTTTCCTTTGGTCTCTTATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAATATCTGTCTTCTGTAAGCTTCTTTTTCCTTTGGTCTCTTATG  836

seq1  GTTTTCTGCCATCTGCACACATTGTCATATTAACAAACATACATAATGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCCATCTGCACACATTGTCATATTAACAAACATACATAATGTT  886

seq1  TAGAAGCTAAGATTTATATATGAGAAAAATATGTAATGTTTATCTTCCCG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTAAGATTTATATATGAGAAAAATATGTAATGTTTATCTTCCCG  936

seq1  GGCCTGGATTATTTAATATATTTTACAGTTCTATTCATTTTCCCAAATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGATTATTTAATATATTTTACAGTTCTATTCATTTTCCCAAATGT  986

seq1  CATAATTTTAAGTTTATTCATGGATGAACAAAATTCTGTCGTGTAAGTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTAAGTTTATTCATGGATGAACAAAATTCTGTCGTGTAAGTAT  1036

seq1  AATACATTTTTATTAGCCATTCTTCTGTTAATTAATATGTAGGTTGATAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTTTATTAGCCATTCTTCTGTTAATTAATATGTAGGTTGATAC  1086

seq1  ATTTTTCTTGCTAAATTAAACATATATGAACAAGTATGTAAGTTCATCTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTGCTAAATTAAACATATATGAACAAGTATGTAAGTTCATCTC  1136

seq1  TAGTAAAGTATAGAATTC  1165
      ||||||||||||||||||
seq2  TAGTAAAGTATAGAATTC  1154