BAC Information

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BAC

Clone NameB6Ng01-140I14
Chromosome4 (Build37)
Map Location 145,539,879 - 145,648,936
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140I14.bB6Ng01-140I14.g
ACCDH939242DH939243
length1,1421,114
definitionDH939242|Mus musculus domesticus DNA, BAC clone: B6Ng01-140I14, 5' end.DH939243|Mus musculus domesticus DNA, BAC clone: B6Ng01-140I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,539,879 - 145,540,782)(145,647,795 - 145,648,936)
sequence
gaattctctgatgaattctcagatggccattttcagtaaaggatttgtca
catcgactacatttgtaaggtttctcacctgtatgatttctctgatgaat
tctgagatggccattttcagtaaaggatttgtcacattgactacatttgt
aaggtttctctcctgtatgaattctctgatgaatattaagatgggatttt
tgggtaaagcatttgtcacattcactgcatttgtaaggtttatctcctgt
atgaatcctctgatgaattctcagattgcctttttcagtaaagcatttct
cacatacaatgcatttgtaaggtttctctcctgtatgaattctctgatga
atattaagatgagatttttgggtaaagcatttgtcacattcactacattt
gtaaggtttctctcctgtatgaattctctgatgaatattaagatgaaatt
tgtgggtaaagcatttgtcacattcactacatttataaattttctcttct
gcatgaattccctgatggatactaagatcgatctgatgggtaaagcattt
gtcacttttactacttctgtaatgtttcttttcatgataaattctctgct
gactttgaagtttgtctctctgggtaagatatttgtcaaatttactacat
ttgtaagggttcactccagtattatttcgtttcaccatgactttatgttt
agaaataaaagccttctcagattctgcatttccgttgtgttttttcttct
gcatgtggattccctgattgagactaatggtagaaaacaaagttaaactg
tttacagagtcattgtatttgcaaacttctttagtgttcctgggcttaag
tcttttttggttcgaaaattgaagagcatcagaggtgtgattagttttgt
aagtgtacattggggggcttcaagtatcacattgctaagtttgtcccatt
tagaagacttctctgatattcatgtgttcatggacatgtactggctgtct
gatcagaccttctcatacttcccatatgcatgatttttgaaaaagtagga
gggcaataagtgactgattactaattaagataagtgatcctatcatggga
gctcatggatcgtactcctcaagaaaagttttctcctttttt
gaattccaggacagccagggctacacagagaaccccagtcttgaaaaaca
aaaaccaaaacaaaaaacaaaaacaaaacaacaacaacaaccaaaccaaa
accaaaaaaaaaaaaaaaagcagccaggagatggcagcacatacctttaa
tcccaaaattcgggagtcagaggcaagcagaccttttgagtttgaggaca
acctggtatatgcagcaaatctcagaacagccaaggctacacagagaaac
cctgttttgaagaaataaatcaataacaacaacaataataatttcaaaaa
gaaagtggtttatcttgccacttctctgttataagatcctagcaattgta
aagagctaaacaactagctataagaacagtatgaagactaactaatgccc
aagacgtttacagttagcctaatactgccacagtgaattagagatcagcc
tgaaaagggacagtctcaggcagcataagaacctgaggctcctgggactc
tgagagccagccatgtctgtgcagctgaaaacacagggaaaccagaagac
tgaaatggtaggcagagttcagttctcttgttctaggttctttagactgt
aaatgaaaagaaaactcagttcagaattaatccactggatagagatttct
agactatattgtagaattatagaacttaagagaaaaaaacaaaacagtat
ggtaatttgaataggaatggcccccataaggctcaaatatttgaatgctt
ggtcattagggagtgccactacttaaagagattaggaggtatggccttgc
tggaggaagtgtgtcactagggggtggacattagggtttcagaagctcaa
gccaggctcagtgactctctattttcccgatgcttgtggacctgaatata
gaactctcatttttcctgtaccacaatgtctttgcacaggctaccatgct
tcctagccatgatgacatgactaaacctctaaactgtagccagccacata
aatgctttcttttaggatgtatgatagtggtgtttctccagcatagacac
tgactagaacctaaggaagattaatataggaacgtcatgggttcctaata
ttttcctcctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145539879_145540782
seq2: B6Ng01-140I14.b_307_1184

seq1  GAATTCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACAATGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACAATGCAT  50

seq1  TTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGA  100

seq1  TTTTTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTC  150

seq1  CTGTATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCAT  200

seq1  TTGTCACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTG  250

seq1  ATGGATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTAC  300

seq1  TTCTGTAATGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTG  350

seq1  TCTCTCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCAC  400

seq1  TCCAGTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCT  450

seq1  TCTCAGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCC  500

seq1  TGATTGAGACTAACGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATT  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGACTAATGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATT  550

seq1  GTATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCG  600

seq1  AAAATTGAAGAGCATCAGAGGTATGATTAGTTTTGTAAGGTGTACATTGG  650
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  AAAATTGAAGAGCATCAGAGGTGTGATTAGTTTTGTAA-GTGTACATTGG  649

seq1  GGGGCTTCAAGTATCACATTGCTAAGTTTGTCCCATTTAGAAGACTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCAAGTATCACATTGCTAAGTTTGTCCCATTTAGAAGACTTCTC  699

seq1  TTGAATATTCATGTGTTCATGGACAATGTACTGGCTGTCTTGATCCAAGA  750
      |   |||||||||||||||||||| |||||||||||||| |||||  |||
seq2  T--GATATTCATGTGTTCATGGAC-ATGTACTGGCTGTC-TGATC--AGA  743

seq1  CCTTCTCATACTTTCCACATATGCAATGATTTTCTGAAAAAAAGTAGGGA  800
      |||||||||||||  | ||||||| |||||||| ||  ||||||||||  
seq2  CCTTCTCATACTT--CCCATATGC-ATGATTTT-TG--AAAAAGTAGG--  785

seq1  GGGGCAATTAGAGGTGACATGAATTACTTATATAAGGAGTAAGTGATTCA  850
       |||||||   | ||||| || |||||| || ||||   |||||||| | 
seq2  AGGGCAAT---AAGTGAC-TG-ATTACTAAT-TAAG--ATAAGTGATCCT  827

seq1  ATAATCAGTGATCTCATGGATTCGTACT-CTCAAGAGAGGTTTTTCTCCT  899
      || ||  | || |||||||| ||||||| ||||||| | | |||||||||
seq2  ATCAT--GGGAGCTCATGGA-TCGTACTCCTCAAGAAAAG-TTTTCTCCT  873

seq1  TTTTT  904
      |||||
seq2  TTTTT  878

seq1: chr4_145647795_145648936
seq2: B6Ng01-140I14.g_66_1179 (reverse)

seq1  AAGGAGGGAGGAAAAAATAATTAGGGAGACCCAATGACGTTTCTATAATT  50
      ||||| |||||||||    |||||   || || |||||||| |||||   
seq2  AAGGA-GGAGGAAAA---TATTAG---GAACCCATGACGTTCCTATA---  40

seq1  TTAATCTTCCTAAGTGTCTTAGTCAGTGTTCTATTGCTGTGAAGAAACAC  100
      ||||||||||| || ||  ||||||||| |||| |||  || ||||||||
seq2  TTAATCTTCCTTAG-GTTCTAGTCAGTG-TCTA-TGC--TGGAGAAACAC  85

seq1  CACTATCATAACGATTCTTAAAAAGGAAAGCATTTAACTGTGGCTGGCTT  150
      ||||||||||   || ||   ||| |||||||||||  |||||||||| |
seq2  CACTATCATA--CATCCT---AAAAGAAAGCATTTA--TGTGGCTGGC-T  127

seq1  ACAGTTTTAGAGGTTTAGTTCATTGTCATCATGGCTAGGAAGCATGGTAG  200
      |||| ||||||||||||| ||| |||||||||||||||||||||||||||
seq2  ACAG-TTTAGAGGTTTAG-TCA-TGTCATCATGGCTAGGAAGCATGGTAG  174

seq1  CCTGTGTAAAGACATTGTGGTACAGGAAAAATGAGAGTTCTATATTCAGA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTGTGCAAAGACATTGTGGTACAGGAAAAATGAGAGTTCTATATTCAGG  224

seq1  TCCACAAGCATCGGGAAAATAGAGAGTCACTGGGCCTGGCTTGGGCTTCT  300
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TCCACAAGCATCGGGAAAATAGAGAGTCACTGAGCCTGGCTTGAGCTTCT  274

seq1  GAAACCCTAAAGTCCA-CCCCTAGTGACACACTTCCTCCAGCAAGGCCAT  349
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  GAAACCCTAATGTCCACCCCCTAGTGACACACTTCCTCCAGCAAGGCCAT  324

seq1  ACCTCCTAATCTCTTTAAGTAGTGGCACTCCCTAATGACCAAGCATTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCTCCTAATCTCTTTAAGTAGTGGCACTCCCTAATGACCAAGCATTCAA  374

seq1  ATATTTGAGCCTTATGGGGGACATTCCTATTCATATTACCATACTGTTTT  449
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  ATATTTGAGCCTTATGGGGGCCATTCCTATTCAAATTACCATACTGTTTT  424

seq1  GGTTTTTTCTCTTCAGTTCTATAATTCTACAATATAGTCTAGAAATCCCT  499
      | ||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GTTTTTTTCTCTTAAGTTCTATAATTCTACAATATAGTCTAGAAATCTCT  474

seq1  ATCCAGTGGATTAATTCTGAACTGAGTTTTCTTTTCATTTACAGTCTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGGATTAATTCTGAACTGAGTTTTCTTTTCATTTACAGTCTAAA  524

seq1  GAACCTAGAACAAGAGAACTGAACTCTGCCTACCATTTCAGTCTTCTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTAGAACAAGAGAACTGAACTCTGCCTACCATTTCAGTCTTCTGGT  574

seq1  TTCCCTGTGTTTTCAGCTGCACAGACATGGCTGGCTCTCAGAGTCCCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTGTTTTCAGCTGCACAGACATGGCTGGCTCTCAGAGTCCCAGG  624

seq1  AGCCTCGGGT--TTATGCTGCCTGAGACTGTCCCTTTTCAGGCTGATCTA  697
      |||||| |||  ||||||||||||||||||||||||||||||||||||| 
seq2  AGCCTCAGGTTCTTATGCTGCCTGAGACTGTCCCTTTTCAGGCTGATCTC  674

seq1  TAATTCACTGTGGCAGTATTAGGCTAACTGTAAACGTCTTGGGCATTGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  TAATTCACTGTGGCAGTATTAGGCTAACTGTAAACGTCTTGGGCATTAGT  724

seq1  TAGTCTTCGTACTGTTCTTATAGCTAGTTGTTTAGCTCTTTACAACTGCT  797
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  TAGTCTTCATACTGTTCTTATAGCTAGTTGTTTAGCTCTTTACAATTGCT  774

seq1  AAGATCTTATAAC--AAAAGTGGCAAGATAAACTACTTTCTTTTTAAAAT  845
      | |||||||||||  | |||||||||||||||| ||||||||||| ||  
seq2  AGGATCTTATAACAGAGAAGTGGCAAGATAAACCACTTTCTTTTTGAA--  822

seq1  TGTTTATTTATTATTATTGTTGTTGTTATTGATTTTTTTCTTCTAGACAG  895
               |||||||||||||||||||||||||| ||||||| | ||||
seq2  ---------ATTATTATTGTTGTTGTTATTGATTTATTTCTTCAAAACAG  863

seq1  GGTTTCTCTGTGTAGCCTTGGCTGTTCTGAGATTTGCTGCATATACCAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCTTGGCTGTTCTGAGATTTGCTGCATATACCAGG  913

seq1  TTGTCCTCAAACTCAAAAGGTCTGCTTGCCTCTGACTCCCGAATTTTGGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCAAACTCAAAAGGTCTGCTTGCCTCTGACTCCCGAATTTTGGG  963

seq1  ATTAAAGGCATGTGCTGCCATCTCCTGGCTGCTTTTTTTGTTTTGTTTTG  1045
      |||||||| |||||||||||||||||||||||||||||| |||| |||||
seq2  ATTAAAGGTATGTGCTGCCATCTCCTGGCTGCTTTTTTT-TTTTTTTTTG  1012

seq1  GTTTGGTTTTGGT--TTGTTGTTGTT---GTTTTGTTTTTTGTTTTTGTT  1090
      |||| | ||||||  |||||||||||    |||||||||||||||| |||
seq2  GTTTTGGTTTGGTTGTTGTTGTTGTTTTGTTTTTGTTTTTTGTTTTGGTT  1062

seq1  TTTGTTTTTCAAGACTGGGGTTTTCTGTGTAGCCCTGGCTTTCCTGGAAT  1140
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TTTGTTTTTCAAGACTGGGGTTCTCTGTGTAGCCCTGGCTGTCCTGGAAT  1112

seq1  TC  1142
      ||
seq2  TC  1114