BAC Information

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BAC

Clone NameB6Ng01-141D11
Chromosome4 (Build37)
Map Location 134,392,650 - 134,544,048
singlet/doubletdoublet
Overlap geneTmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
Upstream geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1
Downstream geneRunx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D11.bB6Ng01-141D11.g
ACCDH939728DH939729
length1,1611,026
definitionDH939728|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D11, 5' end.DH939729|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,542,853 - 134,544,048)(134,392,650 - 134,393,680)
sequence
gaattctcctgctgtgacattccagtgatgtcaaaggcacgcagaagagg
ggcagcctgcagcaggacagatacagggtgcagcctgtcagatcgcagtt
tcttccttctagtccttcattcatactcggtaagcctctgtccacagtgt
gcccacagaacccaccttcccaggagctcacagactccctcccgtagagc
tcttgctgtaggcttgtccaagtacagtctgtcttctgggacgcccttgc
ccttcagcgactccagaagggagtaactttagcatcacagaaatctacag
tccagagtgtctctgccattctgtgactttgggaggatcatataatctct
ggaactcagtttctaggtctgtagaatgggcgtgggcatggctgtacatg
tatgtatcatgatcggtgtatcgatggtgatggcgtatcacagtgtgtgg
ccaaggaagaggttaaggagcgtttggaagctgggaacatggcacactgg
ttaaagtcctcgctgtgtgagtgtgaggactgcagctgggaaggattctt
aaaatcagtgtcaggccttgcatgcatgtgtatacacacacacacacaca
cacacacacacgtgtatgcccacacatatgcccaacacatacacatgcaa
atgaaaaggagaggaagaaggaaaaattagcatctattaaattacttatt
atttcctattacaagatggggaaactgaggctccgagggaaatgtttccc
atgagacacccgaggagtccctgagatgatgtctctctcagatttacatt
ctggaactttctgacatagggtcagaagttcagccttcacggtgatcttg
tcatacgggttgcagattgaacaggagaaaataaagttagatttgtccac
agccaggatccactgaggggcaagagacaaagaggctcatctgcctctgg
aagccatcaaggacacaaagcacaagagcttggcgtgcacacctcttgga
atctcaacatttagaggctgcacaggagggcccagttcaaggtgtctgaa
aagatgagacctgattcaaaatcattatattatatatagaaagctaagag
atactgattgaatcttcaaccatcaaaacggggagtcagcccagaaaaaa
aaaaatttctc
gaattcattgggattctataggcaggttttacctgaatgaacaagaactt
taacactgaaaagcttcctgtttcctcataaaccattcctaaagagcttc
attcttaaagcttgctggaatgcagatgaaccaaaatattggcaagaaat
atgctggtggtaatattaataatgctgccttcctctggacaccactattc
attaccaataagacataagcttgaagccatcttttggaagcatggatttg
ctctgaccaaagcgccaggcctggactggagagttagttgtaaggtgtag
ctatggaacacaatagaaataacatgtaagtcaaaagaataagctcaggc
tatgcccaggctctaactgaataattcaaaacctgtggtctagagactcc
tgaagtagccctgagatccttccaaacggagagctctaaaaaccagagcc
acccttctattgtttgggtaaatagttattttcagtgaattaataagtac
attttacttcttgttttattttctctttttttttcaattgttatttgttt
aattgatttttattgagaacagggtctctgtagccctagttggcctggca
ctcactctgtagaccaggctggctagaactcagagactctttgaattctg
cctcctgggtactgggactaaaggtgtgactcaccacccctggtttattt
tgtaacctacatttaacagaagctctttggagttctcaagaatttttaat
tacttaaaaggagtcttcagaccaatgagaatcactgctttgaatcaatg
acactagttccagagcactccaggtaagacttagcaacacagagtcctcc
attgctactttctttcttggtaatcctctgcccaatcatttctctcaact
cagtggagaaagaacaaaacagaaccattcatcagtgggctcattctaca
gacccaattactcatcccaaacagcactttcattgctaacagctagttat
tcttaataactccacttaaaacaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134542853_134544048
seq2: B6Ng01-141D11.b_47_1207 (reverse)

seq1  GAGAATTTTTTTTTTTTTCTGGCCTGGACTTCACCAGTTTTTATATGGGT  50
      |||||  ||||||||||||||| || ||||   || ||||| ||   || 
seq2  GAGAA-ATTTTTTTTTTTCTGGGCT-GACT--CCCCGTTTTGAT---GG-  42

seq1  TTTAAGGATCCAATCCAGTTATCTCTTTAGCTTACTTATTATTAATATAA  100
       || | ||| |||| ||| |||||| ||||||| | |||   ||||||||
seq2  -TTGAAGATTCAAT-CAG-TATCTC-TTAGCTTTC-TATATATAATATAA  87

seq1  TTGATTTTTGAATCAGGGTCTCACTCTGTTCTCAGACTGGCCTTGAACTT  150
       ||| |||||||||| |||||||   | || ||||||   ||||||||| 
seq2  -TGA-TTTTGAATCA-GGTCTCA---TCTTTTCAGAC--ACCTTGAACT-  128

seq1  GTGGCCCTCCTGTTGCAGCCTCCTGAATGTTGAGATTCC-AGGTGTGTGC  199
        |||||||||| |||||||| || |||||||||||||| ||  ||||| 
seq2  -GGGCCCTCCTG-TGCAGCCT-CTAAATGTTGAGATTCCAAGAGGTGTG-  174

seq1  TGCCACGCCCAGCTCCTTTGTGCTTTTGTGTCCTTGATGGCTTCAGGAGG  249
         |||||| |||||  |||||| ||||||||||||||||||||  ||||
seq2  ---CACGCCAAGCTC--TTGTGC-TTTGTGTCCTTGATGGCTTCCAGAGG  218

seq1  CAGGTGAGCCTCTTTGTCTCCTGGCCCCTCAGTGGATCCCTGGCTGT-GA  298
      ||| ||||||||||||||| || |||||||||||||| ||||||||| ||
seq2  CAGATGAGCCTCTTTGTCT-CTTGCCCCTCAGTGGAT-CCTGGCTGTGGA  266

seq1  CAAATCTAACTTTATTTTCTCCTGTTCATTCTGC-ACCCGTGCTGACAAG  347
      |||||||||||||||||||||||||||| ||||| ||||||  |||||||
seq2  CAAATCTAACTTTATTTTCTCCTGTTCAATCTGCAACCCGT-ATGACAAG  315

seq1  ATCACCGTGAAGGCTGAAC-TCTGACCCTATGGTCAGAAAGTTCCAGAAT  396
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  ATCACCGTGAAGGCTGAACTTCTGACCCTAT-GTCAGAAAGTTCCAGAAT  364

seq1  GTAGAATCTGAGAGAGACATTCATCTCAGGGACTCCTCGGGTGTCTCATG  446
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTA-AATCTGAGAGAGACA-TCATCTCAGGGACTCCTCGGGTGTCTCATG  412

seq1  GGAAACATTTTCCCTCGGAGCCTCAGTTTCCCCATCTTGTAATAGGAAAT  496
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACA-TTTCCCTCGGAGCCTCAGTTTCCCCATCTTGTAATAGGAAAT  461

seq1  AATAAGTAATTTAATAGATGCTAATTTTTCCTTCTTCCTCTCCTTTTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAATTTAATAGATGCTAATTTTTCCTTCTTCCTCTCCTTTTCAT  511

seq1  TTGCATGTGTATGTGTTGGGCATATGTGTGGGCATACACGTGTGTGTGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTGTATGTGTTGGGCATATGTGTGGGCATACACGTGTGTGTGTG  561

seq1  TGTGTGTGTGTGTGTGTATACACATGCATGCAAGGCCTGACACTGATTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTATACACATGCATGCAAGGCCTGACACTGATTTT  611

seq1  AAGAATCCTTCCCAGCTGCAGTCCTCACACTCACACAGCGAGGACTTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCTTCCCAGCTGCAGTCCTCACACTCACACAGCGAGGACTTTAA  661

seq1  CCAGTGTGCCATGTTCCCAGCTTCCAAACGCTCCTTAACCTCTTCCTTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCCATGTTCCCAGCTTCCAAACGCTCCTTAACCTCTTCCTTGG  711

seq1  CCACACACTGTGATACGCCATCACCATCGATACACCGATCATGATACATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACTGTGATACGCCATCACCATCGATACACCGATCATGATACATA  761

seq1  CATGTACAGCCATGCCCACGCCCATTCTACAGACCTAGAAACTGAGTTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAGCCATGCCCACGCCCATTCTACAGACCTAGAAACTGAGTTCC  811

seq1  AGAGATTATATGATCCTCCCAAAGTCACAGAATGGCAGAGACACTCTGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATATGATCCTCCCAAAGTCACAGAATGGCAGAGACACTCTGGA  861

seq1  CTGTAGATTTCTGTGATGCTAAAGTTACTCCCTTCTGGAGTCGCTGAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATTTCTGTGATGCTAAAGTTACTCCCTTCTGGAGTCGCTGAAGG  911

seq1  GCAAGGGCGTCCCAGAAGACAGACTGTACTTGGACAAGCCTACAGCAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCGTCCCAGAAGACAGACTGTACTTGGACAAGCCTACAGCAAGA  961

seq1  GCTCTACGGGAGGGAGTCTGTGAGCTCCTGGGAAGGTGGGTTCTGTGGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACGGGAGGGAGTCTGTGAGCTCCTGGGAAGGTGGGTTCTGTGGGC  1011

seq1  ACACTGTGGACAGAGGCTTACCGAGTATGAATGAAGGACTAGAAGGAAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGGACAGAGGCTTACCGAGTATGAATGAAGGACTAGAAGGAAGA  1061

seq1  AACTGCGATCTGACAGGCTGCACCCTGTATCTGTCCTGCTGCAGGCTGCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCGATCTGACAGGCTGCACCCTGTATCTGTCCTGCTGCAGGCTGCC  1111

seq1  CCTCTTCTGCGTGCCTTTGACATCACTGGAATGTCACAGCAGGAGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGCGTGCCTTTGACATCACTGGAATGTCACAGCAGGAGAATTC  1161

seq1: chr4_134392650_134393680
seq2: B6Ng01-141D11.g_69_1094

seq1  GAATTCATTGGGATTCTATAGGCAGGTTTTACCTGAATGAACAAGAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGGATTCTATAGGCAGGTTTTACCTGAATGAACAAGAACTT  50

seq1  TAACACTGAAAAGCTTCCTGTTTCCTCATAAACCATTCCTAAAGAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGAAAAGCTTCCTGTTTCCTCATAAACCATTCCTAAAGAGCTTC  100

seq1  ATTCTTAAAGCTTGCTGGAATGCAGATGAACCAAAATATTGGCAAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAAGCTTGCTGGAATGCAGATGAACCAAAATATTGGCAAGAAAT  150

seq1  ATGCTGGTGGTAATATTAATAATGCTGCCTTCCTCTGGACACCACTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTGGTAATATTAATAATGCTGCCTTCCTCTGGACACCACTATTC  200

seq1  ATTACCAATAAGACATAAGCTTGAAGCCATCTTTTGGAAGCATGGATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAATAAGACATAAGCTTGAAGCCATCTTTTGGAAGCATGGATTTG  250

seq1  CTCTGACCAAAGCGCCAGGCCTGGACTGGAGAGTTAGTTGTAAGGTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCAAAGCGCCAGGCCTGGACTGGAGAGTTAGTTGTAAGGTGTAG  300

seq1  CTATGGAACACAATAGAAATAACATGTAAGTCAAAAGAATAAGCTCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAACACAATAGAAATAACATGTAAGTCAAAAGAATAAGCTCAGGC  350

seq1  TATGCCCAGGCTCTAACTGAATAATTCAAAACCTGTGGTCTAGAGACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAGGCTCTAACTGAATAATTCAAAACCTGTGGTCTAGAGACTCC  400

seq1  TGAAGTAGCCCTGAGATCCTTCCAAACGGAGAGCTCTAAAAACCAGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGCCCTGAGATCCTTCCAAACGGAGAGCTCTAAAAACCAGAGCC  450

seq1  ACCCTTCTATTGTTTGGGTAAATAGTTATTTTCAGTGAATTAATAAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTATTGTTTGGGTAAATAGTTATTTTCAGTGAATTAATAAGTAC  500

seq1  ATTTTACTTCTTGTTTTATTTTCTCTTTTTTTTTCAATTGTTATTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTCTTGTTTTATTTTCTCTTTTTTTTTCAATTGTTATTTGTTT  550

seq1  AATTGATTTTTATTGAGAACAGGGTCTCTGTAGCCCTAGTTGGCCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTTTATTGAGAACAGGGTCTCTGTAGCCCTAGTTGGCCTGGCA  600

seq1  CTCACTCTGTAGACCAGGCTGGCTAGAACTCAGAGACTCTTTGAATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTGGCTAGAACTCAGAGACTCTTTGAATTCTG  650

seq1  CCTCCTGGGTACTGGGACTAAAGGTGTGACTCACCACCCCTGGTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGGTACTGGGACTAAAGGTGTGACTCACCACCCCTGGTTTATTT  700

seq1  TGTAACCTACATTTAACAGAAGCTCTTTGGAGTTCTCAAGAATTTTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTACATTTAACAGAAGCTCTTTGGAGTTCTCAAGAATTTTTAAT  750

seq1  TACTTAAAAGGAGTCTTCAGACCAATGAGAATCACTGCTTTGATTCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACTTAAAAGGAGTCTTCAGACCAATGAGAATCACTGCTTTGAATCAATG  800

seq1  ACAACTTAGTTCCAGAGCACTCCAGGTAAGACTAAGCAACACAGAGTCCT  850
      |||   ||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACA--CTAGTTCCAGAGCACTCCAGGTAAGACTTAGCAACACAGAGTCCT  848

seq1  CCATTGCTAC-TTCCTTCTT-GTAATCCTCTGCCCAATCATTTCTCTCTA  898
      |||||||||| ||| ||||| ||||||||||||||||||||||||||| |
seq2  CCATTGCTACTTTCTTTCTTGGTAATCCTCTGCCCAATCATTTCTCTCAA  898

seq1  CTCAAGTGAGAAAGAACAAAACAGAACCATTCATCAGTGGGCTCAATCTA  948
      ||||   |||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCAGTGGAGAAAGAACAAAACAGAACCATTCATCAGTGGGCTCATTCTA  948

seq1  CAGACCCAATTAACTCATCCCAAAACAGGCACTTCCATTGCTAACAGCTA  998
      ||||||||||| ||||||||| ||||| |||||| |||||||||||||||
seq2  CAGACCCAATT-ACTCATCCC-AAACA-GCACTTTCATTGCTAACAGCTA  995

seq1  GTTTATTCCTAATAAACTCCACTTAAAACAGGT  1031
      | |||||| |||| |||||||||||||||||||
seq2  G-TTATTCTTAAT-AACTCCACTTAAAACAGGT  1026