BAC Information

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BAC

Clone NameB6Ng01-141H19
Chromosome4 (Build37)
Map Location 94,988,735 - 94,989,854
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H19.bB6Ng01-141H19.g
ACCDH939934DH939935
length1,1461,099
definitionDH939934|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H19, 5' end.DH939935|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctgaagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccggggatccatcccacaatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaca
tagaagtggatgctcacagtcggcttttggatggatcacatggcccccat
gaaggagctagagaagtacaaagaagctaaagggatctgcaccctatagg
tgacacattatgactacagtacccggagccttgactctagctgcattgca
tcaaagatggctagtcggcatcctggaagaagtccattgacacgcaaact
tttaattgcctcattaagggatcgccaggtcataaaaggaatgtgg
gaattcttttccagaggagccctttaaaaaagtttatttttattgtatgt
gaatgagtgtttgtttgcatggatgtatttgtaccatgtgtgttcctggt
gcctgtgtaagccagaagagagcttcaggtccccaggaactgtagttaaa
atggtcatgagctgctatgctgatgctgggaactgaacataggtcctctg
caagagtaagacatgttctgaactactgagccatccttaacccccaaacc
aacaccagcacagaagacttttctttttctttattatttctctttctcac
tcttttttggaacagagttttatgtggaacaagatacaagaaatacttca
atcaagaaaatcaaatcaatacatcaatcaagaaaaacaaacaaaaaaat
aatgaacatgaccaaaatgtgtaagaactcagggaattattcaacagaac
cctaagaatagaaagagataaggtgaaaagtaaaattacagagaatctat
tcaatgaaaatatagcaggatattcttcaaatatatagataaaaatggac
atccaattgcaagaggcttttaggactccagatagacatgatcagagaat
aatactagagcaaacatgttaaaatacaaatataattaaaagttgttcaa
ggaaaataccaaatcacctacaaagataaatacattacaacaatatcaga
tctttcatcagcagtcagaaaaactagaaaagcatggaacaatatatttc
aagccatgaaggcgaataagtctcaaagcaagctggcatctcctataaca
ttttaaaattgacagagaactaagaatatctcaagatagctcaaataatt
tcatgatcattaagccagaattgcagaagatacttaaaggaatactgtat
acagagaagaagagtgatacgtgcactcataggaacacagaaaagcagtt
tcatgagacagatgaacatagaagaccagtcatgccttgctctatccata
cagtaacatcaacacctatatcacaggaaaagtagaacaacaatatctga
tcaccaaaaaccacagactgcaggaattttgtgacactctctcacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_94988735_94989854
seq2: B6Ng01-141H19.g_69_1167

seq1  GAATTCTTTTCCAGAGGAGCCCTTTAAAAAAGTTTATTTTTATTGTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCAGAGGAGCCCTTTAAAAAAGTTTATTTTTATTGTATGT  50

seq1  GAATGAGTGTTTGTTTGCATGGATGTATTTGTACCATGTGTGTTCCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTGTTTGTTTGCATGGATGTATTTGTACCATGTGTGTTCCTGGT  100

seq1  GCCTGTGTAAGCCAGAAGAGAGCTTCAGGTCCCCAGGAACTGTAGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTAAGCCAGAAGAGAGCTTCAGGTCCCCAGGAACTGTAGTTAAA  150

seq1  ATGGTCATGAGCTGCTATGCTGATGCTGGGAACTGAACATAGGTCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATGAGCTGCTATGCTGATGCTGGGAACTGAACATAGGTCCTCTG  200

seq1  CAAGAGTAAGACATGTTCTGAACTACTGAGCCATCCTTAACCCCCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAAGACATGTTCTGAACTACTGAGCCATCCTTAACCCCCAAACC  250

seq1  AACACCAGCACAGAAGACTTTTCTTTTTCTTTATTATTTCTCTTTCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGCACAGAAGACTTTTCTTTTTCTTTATTATTTCTCTTTCTCAC  300

seq1  TCTTTTTTGGAACAGAGTTTTATGTGGAACAAGATACAAGAAATACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGGAACAGAGTTTTATGTGGAACAAGATACAAGAAATACTTCA  350

seq1  ATCAAGAAAATCAAATCAATACATCAATCAAGAAAAACAAACAAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAATCAAATCAATACATCAATCAAGAAAAACAAACAAAAAAAT  400

seq1  AATGAACATGACCAAAATGTGTAAGAACTCAGGGAATTATTCAACAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACATGACCAAAATGTGTAAGAACTCAGGGAATTATTCAACAGAAC  450

seq1  CCTAAGAATAGAAAGAGATAAGGTGAAAAGTAAAATTACAGAGAATCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAATAGAAAGAGATAAGGTGAAAAGTAAAATTACAGAGAATCTAT  500

seq1  TCAATGAAAATATAGCAGGATATTCTTCAAATATATAGATAAAAATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAAATATAGCAGGATATTCTTCAAATATATAGATAAAAATGGAC  550

seq1  ATCCAATTGCAAGAGGCTTTTAGGACTCCAGATAGACATGATCAGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTGCAAGAGGCTTTTAGGACTCCAGATAGACATGATCAGAGAAT  600

seq1  AATACTAGAGCAAACATGTTAAAATACAAATATAATTAAAAGTTGTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGAGCAAACATGTTAAAATACAAATATAATTAAAAGTTGTTCAA  650

seq1  GGAAAATACCAAATCACCTACAAAGATAAATACATTACAACAATATCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATACCAAATCACCTACAAAGATAAATACATTACAACAATATCAGA  700

seq1  TCTTTCATCAGCAGTCAGAAAAACTAGAAAAGCATGGAACAATATATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATCAGCAGTCAGAAAAACTAGAAAAGCATGGAACAATATATTTC  750

seq1  AAGCCATGAAGGCGAATAAGTCTCAAAGCAAGCTGGCATCTCCTATAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGAAGGCGAATAAGTCTCAAAGCAAGCTGGCATCTCCTATAACA  800

seq1  TTTTAAAATTGACAGAGAACTAAGAATATCTCAAGATAGCTCAAAATAAT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTAAAATTGACAGAGAACTAAGAATATCTCAAGATAGCTC-AAATAAT  849

seq1  TTCATGATCATTAAGCCAGAATTGCAGAAGATACTTAAAGGAATACTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATCATTAAGCCAGAATTGCAGAAGATACTTAAAGGAATACTGTA  899

seq1  TACAGAGAAAGAAGAGTGATACGTGCACTCATAGGAACACAAGGAAAAGC  950
      ||||||| |||||||||||||||||||||||||||||||||  |||||||
seq2  TACAGAG-AAGAAGAGTGATACGTGCACTCATAGGAACACA--GAAAAGC  946

seq1  AAGTTTCATGAGACAGATGAACATAGAAGACCAAGTCATGCCTTGCTTCT  1000
       ||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  -AGTTTCATGAGACAGATGAACATAGAAGACC-AGTCATGCCTTGC-TCT  993

seq1  ATCCAATACAGTAAACAATCAAACACCTAATATTCACAGGGGAAAAGTAG  1050
      |||| |||||||||   ||| ||||||| ||| |||||  ||||||||||
seq2  ATCC-ATACAGTAA--CATC-AACACCT-ATA-TCACA--GGAAAAGTAG  1035

seq1  AACAAACAATAATCTGATCAACCAAAAACACAACAGAACTGCAGGAA-TT  1099
      ||| |||||| |||||||| |||||||  || |||| |||||||||| ||
seq2  AAC-AACAAT-ATCTGATC-ACCAAAA--ACCACAG-ACTGCAGGAATTT  1079

seq1  TGTGAACATCTCTCAACACCC  1120
      |||||   |||||| ||||||
seq2  TGTGACACTCTCTC-ACACCC  1099