BAC Information

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BAC

Clone NameB6Ng01-141I04
Chromosome4 (Build37)
Map Location 96,226,805 - 96,344,207
singlet/doubletdoublet
Overlap geneCyp2j9, Cyp2j5
Upstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6
Downstream geneLOC100039415, LOC620779, LOC620883, EG638698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I04.bB6Ng01-141I04.g
ACCDH939952DH939953
length1,147252
definitionDH939952|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I04, 5' end.DH939953|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,343,049 - 96,344,207)(96,226,805 - 96,227,056)
sequence
gaattcattctcacatttataaacttttgttgtgaaatcattgttccttg
attgaaaactattggttaaataaaattggctacagccaattactggaggg
gttaaaagctggtgggtttttaattacctggatggaggtagagaagagta
aaaagtgatgaaaggaacctggaaaatgggataacacttgaaatgtaaat
aaaggaaacatccacagcagccttaagcacatacacacattgtattctct
cttcccttttctcactccaactctttgccctaagaaaatagatgtgagtt
ggctttcttctgttgttgctattcataattgtggctccttatattccgtt
tttaaaggaataccacatagagatccctagccttccagacagtggagtta
cggagcaaatcacaggcatacccattgtaattgtttgcagttttgcttgt
gaaactatataatgggctgaaatttcccatttgtcaagtatggccttgat
tatgttaaaatatgttctcccaaccctctagtgtgctgacttaacttttg
tctgtaaacttgtcatggacctggacatatctgggaagaagaaatcaaaa
ttgaggaattgcctgcatcatattatcctatgggaatatctgtgagacat
tttattgattagtgtttagtgtgatagtgttactccattaaaggtaatcc
cagattgtatagaaaagaaatatctggagttgaaggtctgtaattgtgag
cacatattgtcaacttatatccttgagtagaacagccactgctctgaacc
tttgagccaattgtccagtcctataactgatatttttactttgtattata
ggaagaaatctgaacaaccactttcagaacaccttaacatgtatacacta
aagcatgttcactcctagttatcttaaacatctataattccaaatgggag
agaagaggtacagagcttctctggacttggtgcttagaggaaatactaca
cagagagtgaagcaaggaaaatgaaagcttgttaagaaaagcaattgtca
ggacaaaatccagtgactaaaaacataagaatggaaggttaattaattta
ttgcttttttctcgcacgaaaaaaaaaattctgggggaagaaattgt
ttcttcaatcagaaagagattccaggcgaaactccaattcctttataaac
cattgttctaataatttaataatcaatggggggggtggtgagggtagagg
ttaatgcatgtgcctctttaaaatatgttaatttctgccaacatctttat
agagctttttaacacttttggagaaatataaattagtccatcagttatag
atgtcatattagaagatacttgaaaaatgaaaaacaaaacttttatacta
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96343049_96344207
seq2: B6Ng01-141I04.b_49_1195 (reverse)

seq1  ACAATTTTTCCTCCACCAGAATTTTTTTCTCCTGCCGAGAACAAAGCCAA  50
      ||||  |||| ||| ||||||||||||| | |   |||||| |||| |||
seq2  ACAA--TTTCTTCCCCCAGAATTTTTTTTTTCGTGCGAGAAAAAAG-CAA  47

seq1  TAAATTAATTTAACCTT-CATTCTTATTGTTCTAGTCAACTGGATCTTGT  99
      |||||||| |||||||| |||||||||  || ||||| ||||||| ||| 
seq2  TAAATTAA-TTAACCTTCCATTCTTATGTTTTTAGTC-ACTGGATTTTG-  94

seq1  TCCTGACATTTGCCTTTTTTCTTAACAAGCTTTCATTTTCCCTGCTTCAC  149
      |||||||| ||||   ||||||||||||||||||||||||| ||||||||
seq2  TCCTGACAATTGC---TTTTCTTAACAAGCTTTCATTTTCCTTGCTTCAC  141

seq1  TCTCTGTGTATGTATTTCCCTCTAAGCACCAAGTCCAG-GGAGCTCTGTA  198
      |||||||||| |||||| |||||||||||||||||||| | |||||||||
seq2  TCTCTGTGTA-GTATTT-CCTCTAAGCACCAAGTCCAGAGAAGCTCTGTA  189

seq1  CCTCTTCTCTTCCCATTTGGAATTATAGATGTTTAAGATAAACTAGGAGT  248
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CCTCTTCTC-TCCCATTTGGAATTATAGATGTTTAAGAT-AACTAGGAGT  237

seq1  GAACATGCCTTTAGTGTATACATGTTAAGGTGCTCTGAAAGTGGTTGTTC  298
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  GAACATG-CTTTAGTGTATACATGTTAAGGTGTTCTGAAAGTGGTTGTTC  286

seq1  AGATTTCTTCCTATAATACAAAGTAAAAATATCAGTTATAGGACTGGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTCCTATAATACAAAGTAAAAATATCAGTTATAGGACTGGACA  336

seq1  ATTGGCTCAAAGGTTCAGAGCAGTGGCTGTTCTACTCAAGGATATAAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTCAAAGGTTCAGAGCAGTGGCTGTTCTACTCAAGGATATAAGTT  386

seq1  GACAATATGTGCTCACAATTACAGACCTTCAACTCCAGATATTTCTTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATATGTGCTCACAATTACAGACCTTCAACTCCAGATATTTCTTTTC  436

seq1  TATACAATCTGGGATTACCTTTAATGGAGTAACACTATCACACTAAACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATCTGGGATTACCTTTAATGGAGTAACACTATCACACTAAACAC  486

seq1  TAATCAATAAAATGTCTCACAGATATTCCCATAGGATAATATGATGCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATAAAATGTCTCACAGATATTCCCATAGGATAATATGATGCAGG  536

seq1  CAATTCCTCAATTTTGATTTCTTCTTCCCAGATATGTCCAGGTCCATGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTCAATTTTGATTTCTTCTTCCCAGATATGTCCAGGTCCATGAC  586

seq1  AAGTTTACAGACAAAAGTTAAGTCAGCACACTAGAGGGTTGGGAGAACAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTACAGACAAAAGTTAAGTCAGCACACTAGAGGGTTGGGAGAACAT  636

seq1  ATTTTAACATAATCAAGGCCATACTTGACAAATGGGAAATTTCAGCCCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACATAATCAAGGCCATACTTGACAAATGGGAAATTTCAGCCCAT  686

seq1  TATATAGTTTCACAAGCAAAACTGCAAACAATTACAATGGGTATGCCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTTTCACAAGCAAAACTGCAAACAATTACAATGGGTATGCCTGT  736

seq1  GATTTGCTCCGTAACTCCACTGTCTGGAAGGCTAGGGATCTCTATGTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTCCGTAACTCCACTGTCTGGAAGGCTAGGGATCTCTATGTGGT  786

seq1  ATTCCTTTAAAAACGGAATATAAGGAGCCACAATTATGAATAGCAACAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTAAAAACGGAATATAAGGAGCCACAATTATGAATAGCAACAAC  836

seq1  AGAAGAAAGCCAACTCACATCTATTTTCTTAGGGCAAAGAGTTGGAGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGCCAACTCACATCTATTTTCTTAGGGCAAAGAGTTGGAGTGA  886

seq1  GAAAAGGGAAGAGAGAATACAATGTGTGTATGTGCTTAAGGCTGCTGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAAGAGAGAATACAATGTGTGTATGTGCTTAAGGCTGCTGTGG  936

seq1  ATGTTTCCTTTATTTACATTTCAAGTGTTATCCCATTTTCCAGGTTCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCTTTATTTACATTTCAAGTGTTATCCCATTTTCCAGGTTCCTT  986

seq1  TCATCACTTTTTACTCTTCTCTACCTCCATCCAGGTAATTAAAAACCCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTTTTTACTCTTCTCTACCTCCATCCAGGTAATTAAAAACCCAC  1036

seq1  CAGCTTTTAACCCCTCCAGTAATTGGCTGTAGCCAATTTTATTTAACCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTAACCCCTCCAGTAATTGGCTGTAGCCAATTTTATTTAACCAA  1086

seq1  TAGTTTTCAATCAAGGAACAATGATTTCACAACAAAAGTTTATAAATGTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCAATCAAGGAACAATGATTTCACAACAAAAGTTTATAAATGTG  1136

seq1  AGAATGAATTC  1159
      |||||||||||
seq2  AGAATGAATTC  1147

seq1: chr4_96226805_96227056
seq2: B6Ng01-141I04.g_75_326

seq1  TTCTTCAATCAGAAAGAGATTCCAGGCGAAACTCCAATTCCTTTATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATCAGAAAGAGATTCCAGGCGAAACTCCAATTCCTTTATAAAC  50

seq1  CATTGTTCTAATAATTTAATAATCAATGGGGGGGGTGGTGAGGGTAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCTAATAATTTAATAATCAATGGGGGGGGTGGTGAGGGTAGAGG  100

seq1  TTAATGCATGTGCCTCTTTAAAATATGTTAATTTCTGCCAACATCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCATGTGCCTCTTTAAAATATGTTAATTTCTGCCAACATCTTTAT  150

seq1  AGAGCTTTTTAACACTTTTGGAGAAATATAAATTAGTCCATCAGTTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTTTAACACTTTTGGAGAAATATAAATTAGTCCATCAGTTATAG  200

seq1  ATGTCATATTAGAAGATACTTGAAAAATGAAAAACAAAACTTTTATACAA  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGTCATATTAGAAGATACTTGAAAAATGAAAAACAAAACTTTTATACTA  250

seq1  TA  252
      ||
seq2  TA  252