BAC Information

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BAC

Clone NameB6Ng01-141I22
Chromosome4 (Build37)
Map Location 9,260,436 - 9,373,986
singlet/doubletdoublet
Overlap gene4933402J24Rik
Upstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584
Downstream geneAsph, Gdf6, 4930448K20Rik, LOC666840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I22.bB6Ng01-141I22.g
ACCDH939986DH939987
length1,048491
definitionDH939986|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I22, 5' end.DH939987|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,372,923 - 9,373,986)(9,260,436 - 9,260,926)
sequence
gaattctatttacctagtcacacaagagacatttaatattaaaactcgat
gtcagtgactcactatgtcatgaaatatttgaaattcactgaaaaggtat
atagcaaactcttgtttttgtaatagaaaggattagaatgagatttattc
aatgtgagcacactgggaagagagacaaaggcattcacaaatccctcaag
tggtcaaggcgtgttctcaagtacccttgacccatccttattgggatttc
agtctcatcctgtcagacaactgttagaattgtttgaaatctcttttcag
gagacatgctccctctcagggcacccttccctcttcctaggatgagattc
ctgggggaaaatcccatttctttgggatccttcttgaatcttgcccttag
taagttagctacataaagattgcctctgaaagtcaattcaattgctcact
gatgaaaatgtctccctctggtcagcatgcttaggctgtgctcagttcag
cacagtagataagaccgtttagtggctctgtctactcctgagaagccaag
ttctcgtgctaaaataaacatctgtatttctcctctttttaatgcagaat
accatctaacctcatgcagagggtgatgggtaatttcagtggtggagaag
gcaatccctacaaggtttcacctagtctttatacccagaggatgctttcc
tgttgttctctgcttggtctgtgttcttattagttgtcctccattgccta
tctgagctatggagaagccctataaggacctgactgctctgtcctttaca
tggagtacataccaggaatcacaatgccagggccaaaaggtactgcagag
gtggtttggctaggctctcccttgagttaggtgtaaccatttgtttcttg
agaatcaatctctgcatttcatcggggagacctcacaaagtcattttaat
tttccaagttaacaggaggttagttgtgaagactcagaactctctgaccc
tggctgtagcacttccctccagatagaaattctggtgagtagaaggtg

tgaatgtagaagcctccttaagaaaatgaaaattttctcaagactcacaa
tgtgatgagagtcagtactaagaaaagacgaatatccttaaggggtgggc
agaaggagaagaaatggtcttgattccatgcattgttcagtctcctcttt
cagttactatttcttccctgaattgttgtctgagtctcaggaatgccaga
cactaggcgcagaagtcatgatccttgttccagttgagcaatgaattgtt
tctcatagttccattgagtttatctgaaactggacttcatcgagttatct
aagataaaagtgggctgacatttgggatcttttactggttttattgtact
ttgcaggttattattcattactgacttcagccaaacaaatgctgggtaca
ttcccagtattgtgaaaatcatcaatgtcctttctctttgtgtacagtag
cagatgtaccctaagtggggaggaaaggggagaggaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9372923_9373986
seq2: B6Ng01-141I22.b_47_1094 (reverse)

seq1  CACCTTCTACCTCCAGCAGAAATTTCTATTCCTGGAGGGAAGTGCTACAA  50
      ||||||||||   || ||| |||||||||  ||||||||||||||||| |
seq2  CACCTTCTAC--TCACCAG-AATTTCTAT--CTGGAGGGAAGTGCTAC-A  44

seq1  GCCAAGGGGTCAGAGAGTTCTGAGTTCTTCCACAAAACTAACCCTCCTGT  100
      ||||  |||||||||||||||||| ||||   || |||||| ||||||||
seq2  GCCA--GGGTCAGAGAGTTCTGAG-TCTT---CACAACTAA-CCTCCTGT  87

seq1  TAACTTGGAAAATTAAAATGACTTTTGTGGGGTTCTCCCCGATGAAATGC  150
      |||||||||||||||||||||| |||||| || |||||||||||||||||
seq2  TAACTTGGAAAATTAAAATGAC-TTTGTGAGG-TCTCCCCGATGAAATGC  135

seq1  AGAGATTGATTCTCAAGAAACAAATGGTTAACACCTAACTCAAGGGAGAG  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAGATTGATTCTCAAGAAACAAATGGTT-ACACCTAACTCAAGGGAGAG  184

seq1  CCTAGCCAAACCACCTCTGCAGTACCTTTTGGCCCTGGCATTGTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCAAACCACCTCTGCAGTACCTTTTGGCCCTGGCATTGTGATTCC  234

seq1  TGGTATGTACTCCATGTAAAGGACAGAGCAGTCAGGTCCTTATAGGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTACTCCATGTAAAGGACAGAGCAGTCAGGTCCTTATAGGGCTT  284

seq1  CTCCATAGCTCAGATAGGCAATGGAGGACAACTAATAAGAACACAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGCTCAGATAGGCAATGGAGGACAACTAATAAGAACACAGACCA  334

seq1  AGCAGAGAACAACAGGAAAGCATCCTCTGGGTATAAAGACTAGGTGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAACAACAGGAAAGCATCCTCTGGGTATAAAGACTAGGTGAAAC  384

seq1  CTTGTAGGGATTGCCTTCTCCACCACTGAAATTACCCATCACCCTCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGGATTGCCTTCTCCACCACTGAAATTACCCATCACCCTCTGCA  434

seq1  TGAGGTTAGATGGTATTCTGCATTAAAAAGAGGAGAAATACAGATGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTAGATGGTATTCTGCATTAAAAAGAGGAGAAATACAGATGTTTA  484

seq1  TTTTAGCACGAGAACTTGGCTTCTCAGGAGTAGACAGAGCCACTAAACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCACGAGAACTTGGCTTCTCAGGAGTAGACAGAGCCACTAAACGG  534

seq1  TCTTATCTACTGTGCTGAACTGAGCACAGCCTAAGCATGCTGACCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTACTGTGCTGAACTGAGCACAGCCTAAGCATGCTGACCAGAGG  584

seq1  GAGACATTTTCATCAGTGAGCAATTGAATTGACTTTCAGAGGCAATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTTTCATCAGTGAGCAATTGAATTGACTTTCAGAGGCAATCTTT  634

seq1  ATGTAGCTAACTTACTAAGGGCAAGATTCAAGAAGGATCCCAAAGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTAACTTACTAAGGGCAAGATTCAAGAAGGATCCCAAAGAAATG  684

seq1  GGATTTTCCCCCAGGAATCTCATCCTAGGAAGAGGGAAGGGTGCCCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCCCCCAGGAATCTCATCCTAGGAAGAGGGAAGGGTGCCCTGAG  734

seq1  AGGGAGCATGTCTCCTGAAAAGAGATTTCAAACAATTCTAACAGTTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCATGTCTCCTGAAAAGAGATTTCAAACAATTCTAACAGTTGTCT  784

seq1  GACAGGATGAGACTGAAATCCCAATAAGGATGGGTCAAGGGTACTTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATGAGACTGAAATCCCAATAAGGATGGGTCAAGGGTACTTGAGA  834

seq1  ACACGCCTTGACCACTTGAGGGATTTGTGAATGCCTTTGTCTCTCTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCTTGACCACTTGAGGGATTTGTGAATGCCTTTGTCTCTCTTCCC  884

seq1  AGTGTGCTCACATTGAATAAATCTCATTCTAATCCTTTCTATTACAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCACATTGAATAAATCTCATTCTAATCCTTTCTATTACAAAAA  934

seq1  CAAGAGTTTGCTATATACCTTTTCAGTGAATTTCAAATATTTCATGACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTTGCTATATACCTTTTCAGTGAATTTCAAATATTTCATGACAT  984

seq1  AGTGAGTCACTGACATCGAGTTTTAATATTAAATGTCTCTTGTGTGACTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCACTGACATCGAGTTTTAATATTAAATGTCTCTTGTGTGACTA  1034

seq1  GGTAAATAGAATTC  1064
      ||||||||||||||
seq2  GGTAAATAGAATTC  1048


seq1: chr4_9260436_9260926
seq2: B6Ng01-141I22.g_74_564

seq1  TGAATGTAGAAGCCTCCTTAAGAAAATGAAAATTTTCTCAAGACTCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAGAAGCCTCCTTAAGAAAATGAAAATTTTCTCAAGACTCACAA  50

seq1  TGTGATGAGAGTCAGTACTAAGAAAAGACGAATATCCTTAAGGGGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAGAGTCAGTACTAAGAAAAGACGAATATCCTTAAGGGGTGGGC  100

seq1  AGAAGGAGAAGAAATGGTCTTGATTCCATGCATTGTTCAGTCTCCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAAGAAATGGTCTTGATTCCATGCATTGTTCAGTCTCCTCTTT  150

seq1  CAGTTACTATTTCTTCCCTGAATTGTTGTCTGAGTCTCAGGAATGCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTATTTCTTCCCTGAATTGTTGTCTGAGTCTCAGGAATGCCAGA  200

seq1  CACTAGGCGCAGAAGTCATGATCCTTGTTCCAGTTGAGCAATGAATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCGCAGAAGTCATGATCCTTGTTCCAGTTGAGCAATGAATTGTT  250

seq1  TCTCATAGTTCCATTGAGTTTATCTGAAACTGGACTTCATCGAGTTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGTTCCATTGAGTTTATCTGAAACTGGACTTCATCGAGTTATCT  300

seq1  AAGATAAAAGTGGGCTGACATTTGGGATCTTTTACTGGTTTTATTGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAGTGGGCTGACATTTGGGATCTTTTACTGGTTTTATTGTACT  350

seq1  TTGCAGGTTATTATTCATTACTGACTTCAGCCAAACAAATGCTGGGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTTATTATTCATTACTGACTTCAGCCAAACAAATGCTGGGTACA  400

seq1  TTCCCAGTATTGTGAAAATCATCAATGTCCTTTCTCTTTGTGTACAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTATTGTGAAAATCATCAATGTCCTTTCTCTTTGTGTACAGTAG  450

seq1  CAGATGTACCCTAAGTGGGGAGGAAAGGGGAGAGGAGGAGA  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTACCCTAAGTGGGGAGGAAAGGGGAGAGGAGGAGA  491


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