BAC Information

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BAC

Clone NameB6Ng01-142C01
Chromosome4 (Build37)
Map Location 148,233,046 - 148,394,555
singlet/doubletdoublet
Overlap geneCasz1, Pex14
Upstream geneD4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755
Downstream geneLOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142C01.bB6Ng01-142C01.g
ACCDH940402DH940403
length1,1221,150
definitionDH940402|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C01, 5' end.DH940403|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,393,429 - 148,394,555)(148,233,046 - 148,234,192)
sequence
gaattcttgtctagctcctatacactttctttagtcctaagtattttaaa
atttattattattgctttgtgatctttatttccactatattttctgttct
ttggtaatacttagaaaagctgttgatttctgtggttttaaaatcattct
attgtgtcttttgtaatagtcctaatgactgttactggttctcttagtat
ttttcagtagcaggtagacaccatttttccttttctgtgttatttaacct
tattattgctcatttcttagactgtccagaactgtgttgggcatgagtgt
tcaaggcagtaaaggggaataatcctgctgtctcctgcttagaaacgcag
cgacagagccataacacaaacagtcatgattacagaacgaccctggactt
tccagggtcctcccttgccgatggacttaacaacaaacacacgattctgc
aagatccttgttctttggccagacttgtgtgatgtgctctttggtgcttc
tgttcaatgagaaggtcgatgtcacttctgttgtttgaagcagaaaggca
gaggacagtggagtccatcttaacgtcacttggcaaatacaggcgactgt
cttctaaagccaaaacaaattgttgtgccgaggggctgaggaaggggctc
agcagtgctaactctgactagaaaaggacaagctcttgtacaggaagcag
tggtgtccacagtgaatatttatgccacagacctagaggctgggcctcat
tcagaagacatctgacaatggcggtgtccgtgatgttggacgtctgctgc
cttcaccaacaccaggcgaggctgtgggaagacaaggactttctcacttg
attggtagctacagagcagctctggtcttgtagtctcccctcttctgagg
gcagacagtgagactctggctcagctttcagctttcttttcctcatcaac
actttggtcaaggcctggtggcttgagtttttccatcctgaccactgcta
cccctctgtggaacctcccctcccccgtcttttaaaaggattaatttgtt
tttattttatgaggtatggagtgtttgcctgcatggtcagtatgatgtat
gcatgaatgcccgccgcctgcc
gaattctggacctgtctaggctgttgaatcagcctttcccagggaggggc
ctggaaaccgcacagatttaccctgcttctcagaaacttcctgctcacta
gagttcagatgttctaagtttgtggctctcgttacctctgtcttggtagc
gcttggccaccagcagctcagtgacctcctctatgctatccagactctga
gacattgggccaggaatgtgagagacagagaatgactctggagcacttgg
ctaccagatattatggtgaatctgcctggccggggacggcataggggcgg
gcatcagagcctggctgaatcctgcccagcaatgctccaagcaaggctgg
agatactgcctgtctgcaacaggttgggaccaggcgtcaagagcaccaat
gcgtcctgggtaatggttagaggctagcccaggaaggcctggacacagtg
tcctttgggatctgcctttaactcttcaattcttcccccactgaaggaag
gtccctgtggtggagagggtgccattgatacaggccagtcgcttggcaag
atctggctgaactagcacattttcaagcatatgtgcccatagctacccat
aaccgcaaggcctctgcctctgggtgcctagagctcacgctgtcactttg
gtgacacagagacctgtgctgcctgcctgttgggttgcacaggaccggtc
ctttggtaagtagatggccatgacttgaaaactgcctgaccccattttaa
ggagtgaggggttaaactggccatctgctgtgagtccctgagggctcaga
atatagagagaggagtcttcgagcctgggtgaagacagaactactgtccc
tggcactcagcgaagaggcgcctgccagcccacccccctcccccagccaa
agtttgatccaaacaggagcaaactttggggaccgcctttggcgctgcat
tgagccaggctgagcctgcgagtggcagctagagcagatggaggcagccc
agcagtccttggcgctgactccacggttcctagtccctttcctgagctcc
ggttcgcgccccgcgtttccaggcgcctctcttagtcagctcagaatgac
agcttggggccgtggcgatctgacctttccctctctcaggttccggtcta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_148393429_148394555
seq2: B6Ng01-142C01.b_41_1162 (reverse)

seq1  GGCA---GGCAGGCATTACATGCATACATACATACATGAACACATGCAGG  47
      ||||   ||| |||||| ||||||||||| ||||| |||   ||||||||
seq2  GGCAGGCGGCGGGCATT-CATGCATACAT-CATAC-TGA--CCATGCAGG  45

seq1  CAAAACACT-CATA-CTCATAAAATAAAAACAAATAAATCCTTTTTAAAA  95
      | ||||||| |||| |||||||||||||||||||| ||||| ||||||||
seq2  C-AAACACTCCATACCTCATAAAATAAAAACAAATTAATCC-TTTTAAAA  93

seq1  GACGGGGGAGGGGAGG-TCCACAGAGGGGTAGCAGT-GTCAGGATGGAAA  143
      |||||||||||||||| ||||||||||||||||||| |||||||||| ||
seq2  GACGGGGGAGGGGAGGTTCCACAGAGGGGTAGCAGTGGTCAGGATGG-AA  142

seq1  AAACTCAAGCCCACAGGCCTTGACCAAAGTGTTGATGGAAGGAAAAGAAA  193
      |||||||||||  ||||||||||||||||||||||||  |||||||||||
seq2  AAACTCAAGCCACCAGGCCTTGACCAAAGTGTTGATG--AGGAAAAGAAA  190

seq1  GCTGAAAGCTGAGCCAGAGTCTCACTGTCTGCCCCTCAGAAGAGGGGAGA  243
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGAAAGCTGAGCCAGAGTCTCACTGTCTG-CCCTCAGAAGAGGGGAGA  239

seq1  CTACAAGACCAGAGCCTGCTCTGTAGCTACCAATCAAGTGAGAAAGTCCT  293
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTACAAGACCAGAG-CTGCTCTGTAGCTACCAATCAAGTGAGAAAGTCCT  288

seq1  TGTCTTCCCACAGCCTCGCCTGGTGTTGGTGAAGGCAGCAGACGTCCAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCCACAGCCTCGCCTGGTGTTGGTGAAGGCAGCAGACGTCCAAC  338

seq1  ATCACGGACACCGCCATTGTCAGATGTCTTCTGAATGAGGCCCAGCCTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGACACCGCCATTGTCAGATGTCTTCTGAATGAGGCCCAGCCTCT  388

seq1  AGGTCTGTGGCATAAATATTCACTGTGGACACCACTGCTTCCTGTACAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTGGCATAAATATTCACTGTGGACACCACTGCTTCCTGTACAAG  438

seq1  AGCTTGTCCTTTTCTAGTCAGAGTTAGCACTGCTGAGCCCCTTCCTCAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCCTTTTCTAGTCAGAGTTAGCACTGCTGAGCCCCTTCCTCAGC  488

seq1  CCCTCGGCACAACAATTTGTTTTGGCTTTAGAAGACAGTCGCCTGTATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGCACAACAATTTGTTTTGGCTTTAGAAGACAGTCGCCTGTATTT  538

seq1  GCCAAGTGACGTTAAGATGGACTCCACTGTCCTCTGCCTTTCTGCTTCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGACGTTAAGATGGACTCCACTGTCCTCTGCCTTTCTGCTTCAA  588

seq1  ACAACAGAAGTGACATCGACCTTCTCATTGAACAGAAGCACCAAAGAGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAAGTGACATCGACCTTCTCATTGAACAGAAGCACCAAAGAGCA  638

seq1  CATCACACAAGTCTGGCCAAAGAACAAGGATCTTGCAGAATCGTGTGTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACAAGTCTGGCCAAAGAACAAGGATCTTGCAGAATCGTGTGTTT  688

seq1  GTTGTTAAGTCCATCGGCAAGGGAGGACCCTGGAAAGTCCAGGGTCGTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAAGTCCATCGGCAAGGGAGGACCCTGGAAAGTCCAGGGTCGTTC  738

seq1  TGTAATCATGACTGTTTGTGTTATGGCTCTGTCGCTGCGTTTCTAAGCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCATGACTGTTTGTGTTATGGCTCTGTCGCTGCGTTTCTAAGCAG  788

seq1  GAGACAGCAGGATTATTCCCCTTTACTGCCTTGAACACTCATGCCCAACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCAGGATTATTCCCCTTTACTGCCTTGAACACTCATGCCCAACA  838

seq1  CAGTTCTGGACAGTCTAAGAAATGAGCAATAATAAGGTTAAATAACACAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGACAGTCTAAGAAATGAGCAATAATAAGGTTAAATAACACAG  888

seq1  AAAAGGAAAAATGGTGTCTACCTGCTACTGAAAAATACTAAGAGAACCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAATGGTGTCTACCTGCTACTGAAAAATACTAAGAGAACCAG  938

seq1  TAACAGTCATTAGGACTATTACAAAAGACACAATAGAATGATTTTAAAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTCATTAGGACTATTACAAAAGACACAATAGAATGATTTTAAAAC  988

seq1  CACAGAAATCAACAGCTTTTCTAAGTATTACCAAAGAACAGAAAATATAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATCAACAGCTTTTCTAAGTATTACCAAAGAACAGAAAATATAG  1038

seq1  TGGAAATAAAGATCACAAAGCAATAATAATAAATTTTAAAATACTTAGGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAAGATCACAAAGCAATAATAATAAATTTTAAAATACTTAGGA  1088

seq1  CTAAAGAAAGTGTATAGGAGCTAGACAAGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAAGTGTATAGGAGCTAGACAAGAATTC  1122

seq1: chr4_148233046_148234192
seq2: B6Ng01-142C01.g_67_1216

seq1  GAATTCTGGACCTGTCTAGGCTGTTGAATCAGCCTTTCCCAGGGAGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGACCTGTCTAGGCTGTTGAATCAGCCTTTCCCAGGGAGGGGC  50

seq1  CTGGAAACCGCACAGATTTACCCTGCTTCTCAGAAACTTCCTGCTCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCGCACAGATTTACCCTGCTTCTCAGAAACTTCCTGCTCACTA  100

seq1  GAGTTCAGATGTTCTAAGTTTGTGGCTCTCGTTACCTCTGTCTTGGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGATGTTCTAAGTTTGTGGCTCTCGTTACCTCTGTCTTGGTAGC  150

seq1  GCTTGGCCACCAGCAGCTCAGTGACCTCCTCTATGCTATCCAGACTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCACCAGCAGCTCAGTGACCTCCTCTATGCTATCCAGACTCTGA  200

seq1  GACATTGGGCCAGGAATGTGAGAGACAGAGAATGACTCTGGAGCACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGGCCAGGAATGTGAGAGACAGAGAATGACTCTGGAGCACTTGG  250

seq1  CTACCAGATATTATGGTGAATCTGCCTGGCCGGGGACGGCATAGGGGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGATATTATGGTGAATCTGCCTGGCCGGGGACGGCATAGGGGCGG  300

seq1  GCATCAGAGCCTGGCTGAATCCTGCCCAGCAATGCTCCAAGCAAGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAGCCTGGCTGAATCCTGCCCAGCAATGCTCCAAGCAAGGCTGG  350

seq1  AGATACTGCCTGTCTGCAACAGGTTGGGACCAGGCGTCAAGAGCACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGCCTGTCTGCAACAGGTTGGGACCAGGCGTCAAGAGCACCAAT  400

seq1  GCGTCCTGGGTAATGGTTAGAGGCTAGCCCAGGAAGGCCTGGACACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCTGGGTAATGGTTAGAGGCTAGCCCAGGAAGGCCTGGACACAGTG  450

seq1  TCCTTTGGGATCTGCCTTTAACTCTTCAATTCTTCCCCCACTGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGATCTGCCTTTAACTCTTCAATTCTTCCCCCACTGAAGGAAG  500

seq1  GTCCCTGTGGTGGAGAGGGTGCCATTGATACAGGCCAGTCGCTTGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGGTGGAGAGGGTGCCATTGATACAGGCCAGTCGCTTGGCAAG  550

seq1  ATCTGGCTGAACTAGCACATTTTCAAGCATATGTGCCCATAGCTACCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTGAACTAGCACATTTTCAAGCATATGTGCCCATAGCTACCCAT  600

seq1  AACCGCAAGGCCTCTGCCTCTGGGTGCCTAGAGCTCACGCTGTCACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCAAGGCCTCTGCCTCTGGGTGCCTAGAGCTCACGCTGTCACTTTG  650

seq1  GTGACACAGAGACCTGTGCTGCCTGCCTGTTGGGTTGCACAGGACCGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACAGAGACCTGTGCTGCCTGCCTGTTGGGTTGCACAGGACCGGTC  700

seq1  CTTTGGTAAGTAGATGGCCATGACTTGAAAACTGCCTGACCCCA-TTTAA  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTGGTAAGTAGATGGCCATGACTTGAAAACTGCCTGACCCCATTTTAA  750

seq1  GGAGTGA-GGGTTAAACTGGCCATCTGCTGTGAGTCCCTGAGGGCTCAGA  798
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGGGGTTAAACTGGCCATCTGCTGTGAGTCCCTGAGGGCTCAGA  800

seq1  ATATAGAGAGAGGAGTCTTCGAGCCTGGGTGAAGACAGAACTACTGTCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGAGAGGAGTCTTCGAGCCTGGGTGAAGACAGAACTACTGTCCC  850

seq1  TGGCACTCAGCGAAGAGGCGCCTGCCAGCCCA-CCCCCTCCCCCAGCCAA  897
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCACTCAGCGAAGAGGCGCCTGCCAGCCCACCCCCCTCCCCCAGCCAA  900

seq1  AGTTTGATCCAAACAGGAGCAAACTTTGGGGACCGCC-TTGGCGCTGCAT  946
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTTTGATCCAAACAGGAGCAAACTTTGGGGACCGCCTTTGGCGCTGCAT  950

seq1  GGAGCCAGGCTGAGCCTGCGAGTGGCAGCGAGAGCAGAGGGAGGCAGCCC  996
       |||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  TGAGCCAGGCTGAGCCTGCGAGTGGCAGCTAGAGCAGATGGAGGCAGCCC  1000

seq1  AGGCAG-CCCTGGCGCCTGACTCCACGGTCCCAAGTCCCCTCCCTGAGCT  1045
      | |||| || ||||| ||||||||||||| || |||||| | ||||||||
seq2  A-GCAGTCCTTGGCG-CTGACTCCACGGTTCCTAGTCCCTTTCCTGAGCT  1048

seq1  CCCGGTCCGCG-CCCGCGTTTCCAGGCGCCTCTC-TAGTCAGCTCAGAAT  1093
       ||||| |||| |||||||||||||||||||||| |||||||||||||||
seq2  -CCGGTTCGCGCCCCGCGTTTCCAGGCGCCTCTCTTAGTCAGCTCAGAAT  1097

seq1  G-CAGCTTGGGGCCCGTGGCGGCTCAACCTTTCCCTCTCCCAGAGCCCCG  1142
      | |||||||||| ||||||||     ||||||||||||| ||| |  |||
seq2  GACAGCTTGGGG-CCGTGGCGATCTGACCTTTCCCTCTCTCAG-GTTCCG  1145

seq1  GTCTA  1147
      |||||
seq2  GTCTA  1150