BAC Information

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BAC

Clone NameB6Ng01-142E05
Chromosome4 (Build37)
Map Location 11,229,747 - 11,480,682
singlet/doubletdoublet
Overlap geneDpy19l4, Rbm35a, LOC634834, 1110037F02Rik
Upstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8
Downstream geneLOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E05.bB6Ng01-142E05.g
ACCDH940502DH940503
length1,114699
definitionDH940502|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E05, 5' end.DH940503|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,229,747 - 11,230,372)(11,479,985 - 11,480,682)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatctgatt
ttctggagtccaccttcttgagttctttatatatattagatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggcct
ttttgtcttattgacagtatcctttgccttacagaagctttgcagtttta
tgaggtcccatttgtcaattttcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtctcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacatgttaaccgccaatagtgccagcaccatttgttgaaaac
gtcttttttccactggatggttttagctcccttgtcaaagatcaagtgac
cataggtgtgtgggttcatttctgggtcttcaattctattccactggtct
acttgtctgtcactataccagtaccatgcagtttttatcacaattgctct
gtagtaaagctttaggtcaggcatggtgattccaccagaggttattttat
ccttgaaaagagttttttctatcctaggttttttgatattccagatgaat
ttgcaaattgccatttctaattcgttgaagaattgagttggaattttgat
ggggattgcattgaatctgtagactgcttttggcaagatagccatttttt
actatatttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaattcttttttcagagacttgaagttcttatcataca
gatctttcacttccttagttagagtcacgccaaagtatttttatatcatt
tgtgactattgagaagggtggattcttggatctggactccaactcacata
cttgtacagcaagcgctttagacggctctgtaattgattctgttactaag
taagccctgtgtggagcctactatcgtcaccatccaacataccatctata
ggtttgccgataac
gaattcactgctgcctgcctctgcctcccaagtgctgagattaaaaacat
ataccaccacacttagtcctcgatttatgaaattaaaaagtacacatatt
ttctatcttcacctccatatatcattccaaaaaaagggccagcctggtct
acaaagtgagttccagggctatacagagaaaccctgtcttgaaataaata
aataaatagatagatagatagatagatagatagatagatagatagataga
tagataaaagtgtgacattaagattctctcccctcttatctatttagcta
ttatgaaattagctacttttaaccacctacaattaaaattatattgtaat
gtactggttggattacttaagaattctggatcatttcctattcatacact
ttattatttctctctttgttttaaagatttatttcatgtgggtgggtata
ttgtcgttgtcttcagacacagcaaaagagggcattggattccattacag
atgttgtgagccaccatgtggttgctgagaattgaactcaggacctctgg
aagaacagtcagtgctcttaaccactgagccatctctctagtcctttctc
tttttaaggacaccggtttatgggatcatttgtcttcaatatattgtata
tttcctgaagacagaaaatacctagctttgggctggtaatatgactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11229747_11230372
seq2: B6Ng01-142E05.b_535_1156

seq1  CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC  50

seq1  ACTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACA  100

seq1  ATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGT  150

seq1  TATTTTATCCTTGAAAAGAGTTTTTTCTATCCTAGGTTTTTTGATATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCCTTGAAAAGAGTTTTTTCTATCCTAGGTTTTTTGATATTCC  200

seq1  AGATGAATTTGCAAATTGCCATTTCTAATTCGTTGAAGAATTGAGTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTTGCAAATTGCCATTTCTAATTCGTTGAAGAATTGAGTTGGA  250

seq1  ATTTTGATGGGGATTGCATTGAATCTGTAGACTGCTTTTGGCAAGATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGGGGATTGCATTGAATCTGTAGACTGCTTTTGGCAAGATAGC  300

seq1  CA-TTTTTACTATA-TTGATCCTGCCAATCCATGAGCATGGGAGATCTTT  348
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATTTTTTACTATATTTGATCCTGCCAATCCATGAGCATGGGAGATCTTT  350

seq1  CCATCTTCTGAGATCTTCTTTAATTTCTTTTTTCAGAGACTTGAAGTTCT  398
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATCTTCTGAGATCTTCTTTAA-TTCTTTTTTCAGAGACTTGAAGTTCT  399

seq1  TATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCAAAGTA-TTT  447
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCAAAGTATTTT  449

seq1  TATATCATTTGTGACTATTGAGAAGGGTGGATTCTTGGAGTCTGAACTCC  497
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  TATATCATTTGTGACTATTGAGAAGGGTGGATTCTTGGA-TCTGGACTCC  498

seq1  AGCTCACATACTTGTACAGCAAGCGC-TTAGACCGGCTCTGTAAGTGATC  546
      | |||||||||||||||||||||||| ||||| ||||||||||| |||| 
seq2  AACTCACATACTTGTACAGCAAGCGCTTTAGA-CGGCTCTGTAATTGATT  547

seq1  CTGTATCTAAGTTAGTCCCTGTGTGGAGTCCTACCTAATCGTCACCATCA  596
      ||||  |||||| || |||||||||||| |||||   |||||||||||| 
seq2  CTGTTACTAAGTAAG-CCCTGTGTGGAG-CCTAC--TATCGTCACCATCC  593

seq1  AACATAACAATCAATAGGTTTGCAGATAAC  626
      ||||| || ||| |||||||||| ||||||
seq2  AACAT-ACCATCTATAGGTTTGCCGATAAC  622

seq1: chr4_11479985_11480682
seq2: B6Ng01-142E05.g_70_768 (reverse)

seq1  CTGAGTCATCTTACCAGCCCAAAGCTAGGTATTTTCTGTCTTCAGGAAAT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATATTACCAGCCCAAAGCTAGGTATTTTCTGTCTTCAGGAAAT  50

seq1  ATACAATATATTGAAGAC-AATGATCCCATAAACCGGTGTCCTTAAAAAG  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATACAATATATTGAAGACAAATGATCCCATAAACCGGTGTCCTTAAAAAG  100

seq1  AGAAAGGACTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGACTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTC  150

seq1  CAGAGGTCCTGAGTTCAATTCTCAGCAACCACATGGTGGCTCACAACATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCCTGAGTTCAATTCTCAGCAACCACATGGTGGCTCACAACATC  200

seq1  TGTAATGGAATCCAATGCCCTCTTTTGCTGTGTCTGAAGACAACGACAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGAATCCAATGCCCTCTTTTGCTGTGTCTGAAGACAACGACAAT  250

seq1  ATACCCACCCACATGAAATAAATCTTTAAAACAAAGAGAGAAATAATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACCCACATGAAATAAATCTTTAAAACAAAGAGAGAAATAATAAA  300

seq1  GTGTATGAATAGGAAATGATCCAGAATTCTTAAGTAATCCAACCAGTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAATAGGAAATGATCCAGAATTCTTAAGTAATCCAACCAGTACA  350

seq1  TTACAATATAATTTTAATTGTAGGTGGTTAAAAGTAGCTAATTTCATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATATAATTTTAATTGTAGGTGGTTAAAAGTAGCTAATTTCATAAT  400

seq1  AGCTAAATAGATAAGAGGGGAGAGAATCTTAATGTCACACTTTTATCTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATAGATAAGAGGGGAGAGAATCTTAATGTCACACTTTTATCTAT  450

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATTT  500

seq1  ATTTATTTCAAGACAGGGTTTCTCTGTATAGCCCTGGAACTCACTTTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCAAGACAGGGTTTCTCTGTATAGCCCTGGAACTCACTTTGTA  550

seq1  GACCAGGCTGGCCCTTTTTTTGGAATGATATATGGAGGTGAAGATAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCCTTTTTTTGGAATGATATATGGAGGTGAAGATAGAAA  600

seq1  ATATGTGTACTTTTTAATTTCATAAATCGAGGACTAAGTGTGGTGGTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTACTTTTTAATTTCATAAATCGAGGACTAAGTGTGGTGGTATA  650

seq1  TGTTTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCAGCAGTGAATTC  698
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCAGCAGTGAATTC  699