BAC Information

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BAC

Clone NameB6Ng01-142F23
Chromosome4 (Build37)
Map Location 48,105,006 - 48,284,421
singlet/doubletdoublet
Overlap geneStx17, Txndc4
Upstream geneGalnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3
Downstream geneInvs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F23.bB6Ng01-142F23.g
ACCDH940586DH940587
length7741,025
definitionDH940586|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F23, 5' end.DH940587|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,105,006 - 48,106,251)(48,283,392 - 48,284,421)
sequence
gaattcagactagacattcactgatgagggttggaagtggaaaaatgtgg
gcattccccaaggaagagagcgtgccatgatttttgagttggtgtccaga
gccaaagtgtctagtttcatctttttctgaacttcgatgcaaaagagtga
gtgagagagcaagagaaaatcaacccaaccccaaggaaggcttgttttcg
ccttccctccagaaagcagctgtcagtttaacttattgcaaaataccttc
agtgatgagcatggctggaaatgcgttttatctgtaattagagagattac
attaaacactattatttgcagacacacattgaattaaccctaatcgaggc
tagcaaatagtagagcctgcctatttttcgcctcaaaatttttagaaaat
tgtgacagttgacacacggggacaatgctgacaagatttctttctgtcaa
atggcagacagtaattgtaattgcctttaaaaaatgttttaagcggtttc
gttagtaaatcagaagttgccacaaatcaggctgatagttttgaaacatg
ggggcctgttgactgtgcattccaatatgagtttaatgaattgatttttc
taaggaatgtaactttgcatctgttttcaggtgtaattaattcgctctga
ttaatgtgattagcatggatatcggtggattacacggggtgccccttatc
tgttcacttgtttttaaatctgccgtggtgtcctttgggaaattacataa
gtgatttgggggtgggggggttac
gaattcttgctgtcttttttgctgacatggccaaacatcagaattgatcc
taaagaagctagcaaaccattaacagttgcttacagttcatcattagttt
agaaaagaaatggaaacaaacatggtcttcagtggatttgaatgtgcatt
gggatggcttcattggagaggaataggaaagcatgccacctcggaggtct
tatgtaaggtcctgtatctgagtctcagtcttcctggtgaggacggagaa
aagtcccaagtgctctgtgagtccctgcttatagtgtggttcttcagttt
ctccaaccagtgatttttatcatcatgtagaattgattacacattatact
tgctcttaattttaaatgtttaagacaagactatactagagaaaaacatt
gaaaaagacccaggaaacttcctaagaagaacattgtagtgttttgtgtt
tttaaaaacttaagtaaactaggtaggcctcatagtagaatgccaatgat
tgttccatttcttaagatgatcatcatactctggaaggagacctttgata
attgaacttaagagatgtttggaaaaatgtctttagaaatcataagaact
tttggcatgtggctctagcattagtgtcttatttcacctgataggaaagt
aactcataatggctgaagttatagttatcaagttgtgctgaacataaaca
ttcaccaaagttaataaaacttgtactccccagtcatggtagctacattt
aagggcaaatggctactgtattgaacactgtacattatggagatccatgt
acttgagccagactgggaggaggtaaagaatgaagaaaatgactcaaaca
gtatcttctaatgggtgtggaaattgttaagggcttttctgttcaaggga
agtgaaaaatgggaagataataaggtcttatcattgggagatttggattt
tgttgttagagttagggaagtgctaaaattatagcagatggagtcttaaa
taagttcttctccatcgttataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48105006_48106251
seq2: B6Ng01-142F23.b_47_820

seq1  GAATTCAGACTAGACATTCACTGATGAGGGTTGGAAGTGGAAAAATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTAGACATTCACTGATGAGGGTTGGAAGTGGAAAAATGTGG  50

seq1  GCATTCCCCAAGGAAGAGAGCGTGCCATGATTTTTGAGTTGGTGTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCCAAGGAAGAGAGCGTGCCATGATTTTTGAGTTGGTGTCCAGA  100

seq1  GCCAAAGTGTCTAGTTTCATCTTTTTCTGAACTTCGATGCAAAAGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTGTCTAGTTTCATCTTTTTCTGAACTTCGATGCAAAAGAGTGA  150

seq1  GTGAGAGAGCAAGAGAAAATCAACCCAACCCCAAGGAAGGCTTGTTTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGCAAGAGAAAATCAACCCAACCCCAAGGAAGGCTTGTTTTCG  200

seq1  CCTTCCCTCCAGAAAGCAGCTGTCAGTTTAACTTATTGCAAAATACCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCCAGAAAGCAGCTGTCAGTTTAACTTATTGCAAAATACCTTC  250

seq1  AGTGATGAGCATGGCTGGAAATGCGTTTTATCTGTAATTAGAGAGATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAGCATGGCTGGAAATGCGTTTTATCTGTAATTAGAGAGATTAC  300

seq1  ATTAAACACTATTATTTGCAGACACACATTGAATTAACCCTAATCGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACACTATTATTTGCAGACACACATTGAATTAACCCTAATCGAGGC  350

seq1  TAGCAAATAGTAGAGCCTGCCTATTTTTCGCCTCAAAATTTTTAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATAGTAGAGCCTGCCTATTTTTCGCCTCAAAATTTTTAGAAAAT  400

seq1  TGTGACAGTTGACACACGGGGACAATGCTGACAAGATTTCTTTCTGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGTTGACACACGGGGACAATGCTGACAAGATTTCTTTCTGTCAA  450

seq1  ATGGCAGACAGTAATTGTAATTGCCTTTAAAAAATGTTTTAAGCGGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGACAGTAATTGTAATTGCCTTTAAAAAATGTTTTAAGCGGTTTC  500

seq1  GTTAGTAAATCAGAAGTTGCCACAAATCAGGCTGATAGTTTTGAAACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAAATCAGAAGTTGCCACAAATCAGGCTGATAGTTTTGAAACATG  550

seq1  GGGGCCTGTTGACTGTGCATTCCAATATGAGTTTAATGAATTGATTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGTTGACTGTGCATTCCAATATGAGTTTAATGAATTGATTTTTC  600

seq1  TAAGGAATGTAACTTTGCATCTGTTTTCAGGTGTAATTAATTCGCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATGTAACTTTGCATCTGTTTTCAGGTGTAATTAATTCGCTCTGA  650

seq1  TTAATGTGATTAGCATGGATATCGGTGGATTACACGGGGTGCCCCTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGATTAGCATGGATATCGGTGGATTACACGGGGTGCCCCTTATC  700

seq1  TGTTCACTTGTTTTT-AATCTGCCGTGGTGTCCTTTGGGAAATTACATAA  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTTCACTTGTTTTTAAATCTGCCGTGGTGTCCTTTGGGAAATTACATAA  750

seq1  GTGATTTGGGGGT-GGGGGGTTACGTCTTACTGGTGGCTCTGATCACATT  798
      ||||||||||||| ||||||||||                          
seq2  GTGATTTGGGGGTGGGGGGGTTAC--------------------------  774

seq1  GAATTTCTGCAAAAGAACCCTGGTGGGAATTCACTGATTATTCACAGACA  848
                                                        
seq2  --------------------------------------------------  774

seq1  GTGCAGCGATGGACTTTTGTTTGAGGGACTTATTGAAGTTTACACAGTCC  898
                                                        
seq2  --------------------------------------------------  774

seq1  CTGCCTTTAAGGAGCTTATAGTCCAGAGGGGAAGATGAGGCAAACATTCC  948
                                                        
seq2  --------------------------------------------------  774

seq1  AATGCAAGTCACTCACAGGAAGGAAAGTCCTCGAGCTATTTCCCAGTACA  998
                                                        
seq2  --------------------------------------------------  774

seq1  GTCTTCCCCAGCTCTCTTGAATCAACACTGCCACCGAGGAGACAACAATG  1048
                                                        
seq2  --------------------------------------------------  774

seq1  GCCCACCTCTCTGTTGGTGGTCCCCACTCTCCTGAGCCATCTTCTCTGCG  1098
                                                        
seq2  --------------------------------------------------  774

seq1  GTGTCAGCTGCCACTCTGAAGCATGTAGGCATCTCCAGTTATATCTTTTC  1148
                                                        
seq2  --------------------------------------------------  774

seq1  CCAGAAACTCCAGGCCTGGGAAGGAGATACCTCACGCTCCCAGATAGCTT  1198
                                                        
seq2  --------------------------------------------------  774

seq1  CCTCTGCCTATTGCAAAGGTAGTCTAAAACCCTAGAGCCAAATGTTAC  1246
                                                      
seq2  ------------------------------------------------  774

seq1: chr4_48283392_48284421
seq2: B6Ng01-142F23.g_69_1093 (reverse)

seq1  TTTTATAAACGAT-GAGAAGAACTAATACTAAGACTCAATTCTTGCTTTT  49
      |||||| |||||| |||||||||| ||  |||||||| ||   |||| | 
seq2  TTTTAT-AACGATGGAGAAGAACTTAT-TTAAGACTCCAT--CTGCTATA  46

seq1  ATTTCTAGCACTTCCCTAACTCCCTAACAAACAAAATCCAAATCT-CCAA  98
      |||| ||||||||||||||||  ||||| |||||||||||||||| ||||
seq2  ATTT-TAGCACTTCCCTAACT--CTAAC-AACAAAATCCAAATCTCCCAA  92

seq1  TGATAAGACTTTTATTATCTTCCATTTTTTCACTGCCCTTTGAACAGAAA  148
      |||||||||  ||||||||||||  ||||||||| ||| |||||||||||
seq2  TGATAAGAC-CTTATTATCTTCCCATTTTTCACTTCCC-TTGAACAGAAA  140

seq1  AGCCC-TAACAATTTCCACACCCATTAG-AGATACTGTTTGAGTCATTTT  196
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCCCTTAACAATTTCCACACCCATTAGAAGATACTGTTTGAGTCATTTT  190

seq1  CTTCATTCTTTACCTCCTCCCAGTCTGGCTCAAGTACATGGGTCTCCATA  246
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTCATTCTTTACCTCCTCCCAGTCTGGCTCAAGTACATGGATCTCCATA  240

seq1  ATGTACAGTGTTCAATACAGTAGCCATTTG-CCTTAAATGTAGCTACCAT  295
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTACAGTGTTCAATACAGTAGCCATTTGCCCTTAAATGTAGCTACCAT  290

seq1  GACTGGGGAGTACAAGTTTTATTTAACTTTGGTGAATGTTTATGTTCAGC  345
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACTGGGGAGTACAAGTTTTA-TTAACTTTGGTGAATGTTTATGTTCAGC  339

seq1  ACAACTTGATAACTATAACTTCAGCCATTATGAGTTAC-TTCCTATCAGG  394
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAACTTGATAACTATAACTTCAGCCATTATGAGTTACTTTCCTATCAGG  389

seq1  TGAAATAAGACACTAATGCTAGAGCCACATGCCAAAAGTTCTTATGATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAGACACTAATGCTAGAGCCACATGCCAAAAGTTCTTATGATTT  439

seq1  CTAAAGACATTTTTCCAAACATCTCTTAAGTTCAATTATCAAAGGTCTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACATTTTTCCAAACATCTCTTAAGTTCAATTATCAAAGGTCTCC  489

seq1  TTCCAGAGTATGATGATCATCTTAAGAAATGGAACAATCATTGGCATTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGTATGATGATCATCTTAAGAAATGGAACAATCATTGGCATTCT  539

seq1  ACTATGAGGCCTACCTAGTTTACTTAAGTTTTTAAAAACACAAAACACTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAGGCCTACCTAGTTTACTTAAGTTTTTAAAAACACAAAACACTA  589

seq1  CAATGTTCTTCTTAGGAAGTTTCCTGGGTCTTTTTCAATGTTTTTCTCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTTCTTAGGAAGTTTCCTGGGTCTTTTTCAATGTTTTTCTCTA  639

seq1  GTATAGTCTTGTCTTAAACATTTAAAATTAAGAGCAAGTATAATGTGTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTCTTGTCTTAAACATTTAAAATTAAGAGCAAGTATAATGTGTAA  689

seq1  TCAATTCTACATGATGATAAAAATCACTGGTTGGAGAAACTGAAGAACCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTACATGATGATAAAAATCACTGGTTGGAGAAACTGAAGAACCA  739

seq1  CACTATAAGCAGGGACTCACAGAGCACTTGGGACTTTTCTCCGTCCTCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAGCAGGGACTCACAGAGCACTTGGGACTTTTCTCCGTCCTCAC  789

seq1  CAGGAAGACTGAGACTCAGATACAGGACCTTACATAAGACCTCCGAGGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACTGAGACTCAGATACAGGACCTTACATAAGACCTCCGAGGTG  839

seq1  GCATGCTTTCCTATTCCTCTCCAATGAAGCCATCCCAATGCACATTCAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTTCCTATTCCTCTCCAATGAAGCCATCCCAATGCACATTCAAA  889

seq1  TCCACTGAAGACCATGTTTGTTTCCATTTCTTTTCTAAACTAATGATGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAAGACCATGTTTGTTTCCATTTCTTTTCTAAACTAATGATGAA  939

seq1  CTGTAAGCAACTGTTAATGGTTTGCTAGCTTCTTTAGGATCAATTCTGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCAACTGTTAATGGTTTGCTAGCTTCTTTAGGATCAATTCTGAT  989

seq1  GTTTGGCCATGTCAGCAAAAAAGACAGCAAGAATTC  1030
      ||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCATGTCAGCAAAAAAGACAGCAAGAATTC  1025