BAC Information

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BAC

Clone NameB6Ng01-142G19
Chromosome4 (Build37)
Map Location 145,335,047 - 145,336,114
singlet/doubletsinglet
Overlap geneLOC545704
Upstream geneGm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351
Downstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142G19.bB6Ng01-142G19.g
ACCDH940626DH940627
length1,0611,192
definitionDH940626|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G19, 5' end.DH940627|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaccaaactgtaagtgaggtcaaaaggcctcaagtgtgggc
tcatccttttccgggtcaaaatctggattatcacttggaggaagtgtccg
gaagatgttagcactgatcatttttactatatcagaatacgctgattcaa
caattacaccacgattagttgaaacatactcaaccagttcattcagtgtc
gctcttttaatttctttgatcttcaagtctgaaacagagtccatgaaatc
aaacagtacacagcactgttgtagcttctggcagaaacgctcttcctgtt
catttgaagtggcatctttgagctggggcagggggtgcaggtccgcctgg
ctgccctggctgcggaactgcgaggagccctgagagcgcttctgcctctg
cgccttgcgcaccgatttccgggtcaagccatccactttatccgaggccg
agatggtggcgcaggcaactggtgcgggcggcgacggcgacgacatctcg
gcgacccgggcgctcggcgcctcccccggtggctggcccgggcaatcggc
ggagcacaggcacgacgggcctgcgcccctgcgtcccgggccggccgtgc
cgccctcgcgctccgcgagctgctcctcacccgacagcgcctcactgccg
cctccccgcgccgcgctgccgcctcccggggctggcgggggcgcgcgggc
cgcacaagttactgacgcccggaagagggcggacggaggggaacccgaag
tgtggaccgctggggcgagcgcgcgggtgcggacgccgggcaggcctgac
ggccccttagcgggcggagtccggacaggtcttcagcagctgccgcccgc
gctgtccgcccgagccgccgccgagcgctcgttctcctgtcagcgatggc
cctcatcgccggggcgccacccgcaccccgatccttggatctttgaatcc
tggagcgtgccttcgctccagcctccgcggcctaccggccgcccacgagc
acgccgggaagcaactgctacaactgagaaggtgtgctggtccggtgagg
ggggaccctgt
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttacccacaaatcccatcttaatagtcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttacccgaaaattcc
atcttagtattcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttacccgaaaattccatcttagtattcatca
gagaattcatacaggagagaacccttacaaatgcagtgaatgtgacaaat
gctttacccaaaaatccgatcttaatattcatcagagaattcatacagga
gagaaaccttacaaatgtagtgaatgtgacaaatgctttacccacaaatc
ccatcttaatagtcatcagagaattcatacaggagagaaaccttacaaat
gtagtgaatgtgacaaatgctttacccgaaaattccatcttagtattcat
cagagaattcatacaggagagaacccttacaaatgcagtgaatgtgacaa
atgctttacccaaaaatccaatcttaatattcatcagagaattcatacag
gagagaaaccttataaatgcagtgaatgtgacaaatgctttaatgaaaaa
ggcagcctgagaattcatcagagaattcatacaggagagaaaccttacaa
atgcagtgaatgtgacaaatgctttacccgaaaattccatcttagtattc
atcagaaaaccatacaggagagaaacttacaaatagtttacatgtgacaa
atacaatactcatcatgtcagtctgagaaatcatcagttacttcatacag
tagagaatctttataaatgaagtgaacgagacatcctttaccaaaatata
tcatcttataattcattagagaatacttagagaagacaacttttcaatat
attgtagtatgatcctttctttggctattcctagatatacagtgaataac
tacagctagaacctactcatgcatgatgaagaatatctttgactcattca
gtcgagaaaactcttagagaccttttaaggaactatttctgtggcaatgg
gcatatggttaataggatccttgacaacttagtcacttagaatgtatgaa
tagaactcttgaatcatgcagtctactcgtagagaatggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145335047_145336114
seq2: B6Ng01-142G19.b_46_1106 (reverse)

seq1  ACAGAGTCCCCCCTCACCGGAGCCAGC-CACCCTCTCAAGTTGTAGCAGT  49
      |||| |||||||||||||||| ||||| |||| |||| ||||||||||||
seq2  ACAGGGTCCCCCCTCACCGGA-CCAGCACACCTTCTC-AGTTGTAGCAGT  48

seq1  TGCTTCCCGGGCGTGCTCCGTGGGCGGCCGGTAGGCGCGGGAGGCT-GAG  98
      |||||||| |||||||| ||||||||||||||||||   ||||||| |||
seq2  TGCTTCCC-GGCGTGCT-CGTGGGCGGCCGGTAGGCCGCGGAGGCTGGAG  96

seq1  CGAGGGCAACGCTCCAAGGATCCAAGGATCCAAGGATCGGGGTGCGGGTG  148
      ||| ||| ||||||| ||||| ||| ||||||||||||||||||||||||
seq2  CGAAGGC-ACGCTCC-AGGATTCAAAGATCCAAGGATCGGGGTGCGGGTG  144

seq1  GCCGCCCCGGGCGATGAGGGGCCATCGCTGACAGGAGAACGAGCGCTCGG  198
      | |||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  G-CGCCCC-GGCGATGA-GGGCCATCGCTGACAGGAGAACGAGCGCTCGG  191

seq1  CGGCGGCTCGGGCGGACAGCGCGGGCGGCAGCTGCTGAAGACCTGTCCGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCTCGGGCGGACAGCGCGGGCGGCAGCTGCTGAAGACCTGTCCGG  241

seq1  ACTCCGCCCGCTAAGGGGCCGTCAGGCCTGCCCGGCGTCCGCACCCGCGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGCCCGCTAAGGGGCCGTCAGGCCTGCCCGGCGTCCGCACCCGCGC  291

seq1  GCTCGCCCCAGCGGTCCACACTTCGGGTTCCCCTCCGTCCGCCCTCTTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCCCCAGCGGTCCACACTTCGGGTTCCCCTCCGTCCGCCCTCTTCC  341

seq1  GGGCGTCAGTAACTTGTGCGGCCCGCGCGCCCCCGCCAGCCCCGGGAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCAGTAACTTGTGCGGCCCGCGCGCCCCCGCCAGCCCCGGGAGGC  391

seq1  GGCAGCGCGGCGCGGGGAGGCGGCAGTGAGGCGCTGTCGGGTGAGGAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGCGGCGCGGGGAGGCGGCAGTGAGGCGCTGTCGGGTGAGGAGCA  441

seq1  GCTCGCGGAGCGCGAGGGCGGCACGGCCGGCCCGGGACGCAGGGGCGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCGGAGCGCGAGGGCGGCACGGCCGGCCCGGGACGCAGGGGCGCAG  491

seq1  GCCCGTCGTGCCTGTGCTCCGCCGATTGCCCGGGCCAGCCACCGGGGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTCGTGCCTGTGCTCCGCCGATTGCCCGGGCCAGCCACCGGGGGAG  541

seq1  GCGCCGAGCGCCCGGGTCGCCGAGATGTCGTCGCCGTCGCCGCCCGCACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGAGCGCCCGGGTCGCCGAGATGTCGTCGCCGTCGCCGCCCGCACC  591

seq1  AGTTGCCTGCGCCACCATCTCGGCCTCGGATAAAGTGGATGGCTTGACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTGCGCCACCATCTCGGCCTCGGATAAAGTGGATGGCTTGACCC  641

seq1  GGAAATCGGTGCGCAAGGCGCAGAGGCAGAAGCGCTCTCAGGGCTCCTCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCGGTGCGCAAGGCGCAGAGGCAGAAGCGCTCTCAGGGCTCCTCG  691

seq1  CAGTTCCGCAGCCAGGGCAGCCAGGCGGACCTGCACCCCCTGCCCCAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCGCAGCCAGGGCAGCCAGGCGGACCTGCACCCCCTGCCCCAGCT  741

seq1  CAAAGATGCCACTTCAAATGAACAGGAAGAGCGTTTCTGCCAGAAGCTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGCCACTTCAAATGAACAGGAAGAGCGTTTCTGCCAGAAGCTAC  791

seq1  AACAGTGCTGTGTACTGTTTGATTTCATGGACTCTGTTTCAGACTTGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCTGTGTACTGTTTGATTTCATGGACTCTGTTTCAGACTTGAAG  841

seq1  ATCAAAGAAATTAAAAGAGCGACACTGAATGAACTGGTTGAGTATGTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAATTAAAAGAGCGACACTGAATGAACTGGTTGAGTATGTTTC  891

seq1  AACTAATCGTGGTGTAATTGTTGAATCAGCGTATTCTGATATAGTAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCGTGGTGTAATTGTTGAATCAGCGTATTCTGATATAGTAAAAA  941

seq1  TGATCAGTGCTAACATCTTCCGGACACTTCCTCCAAGTGATAATCCAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTGCTAACATCTTCCGGACACTTCCTCCAAGTGATAATCCAGAT  991

seq1  TTTGACCCGGAAAAGGATGAGCCCACACTTGAGGCCTTTTGACCTCACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCCGGAAAAGGATGAGCCCACACTTGAGGCCTTTTGACCTCACTT  1041

seq1  ACAGTTTGGTGTATGAATTC  1068
      ||||||||||||||||||||
seq2  ACAGTTTGGTGTATGAATTC  1061