BAC Information

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BAC

Clone NameB6Ng01-142N08
Chromosome4 (Build37)
Map Location 36,565,838 - 36,732,073
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142N08.bB6Ng01-142N08.g
ACCDH940930DH940931
length9641,199
definitionDH940930|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N08, 5' end.DH940931|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,731,110 - 36,732,073)(36,565,838 - 36,567,041)
sequence
gaattcaggaaccaatacaatggaaaacacagctttcccaatggattgtc
ttggaaagcacctaggtaggggtagaaatgatatgagaatagaagaatag
gggttttagtttttaattatgatgtaaatttaaagtggtttcctttatga
tgcagttttgatgggttccgaacttgtactctgacatttggttcactatt
ctcatgtgtcatccaggtttcacaatgctattctgtgattttcattggct
atagttttttcctgtccaaatattttaacacagattagaagtcaaactgc
taggctagaatcagcctctgctaataaaggagaggtgagtgtggataagg
tggttctaaaaattgtaataacatcttcttccaacaaagaaattacaaat
gacccatagaaattctccttagaattctatgcatacaataaaacaccact
atgccaataatttttgatcacttacaattcagtgtttttcccaataattg
aaatttagggccattttaaaagatgattccattctatgtgtattctaaaa
attataaggaaggaaggcatgaatgaatgctatcactctgtaagggtagg
tcttgttcatttgtgtcactagaaatgagaaacaagaatgagggcacacc
agtaataacaactgcgctgtgacccgtgactgcacaggacattagcaaca
ctgaaggatcatcagttctagacatgtgctgagtgtggttaggttacagt
gattagaaaggttcattaaaaattttcaggcacttatagtgcatgcctac
tggtagtgtttctattcataaaatatctttctaaaagtatgacttaaagg
gggaaatcactgcagatgctaacataacctttcttattatgctaacatca
ccatttgcaccattagcaagacccagaaacactgcaaacttgagagagag
agagagagagagag
gaattccttgaggattaaggcaggaacaaagtaaaaaatgtcttttattg
aatcttcttattctctgctatgaaaattaattattcattgaaaagacagt
tgcaaaatatgtacaatgtgtgtggttttaccctacatagcatcttttca
aaaattaattatagcaaagagtttcaattcaaaaggaaataattaaaaga
aatatgggggaatttagagatcacagtgttatttttaaataaattgaaga
atttacaacttaacaaatatttcatacactttaatttctgttcaaattta
cttgtttatatcaatattcaatattttactaaatctgattttgaatgttg
taatgtgacaaatactaatttgttatacatttctcttctatgaagaaaaa
cttttagttcgtctaagacacataaaaatttttttggcatttatacattt
aaaaaatattttctcatacagtacattgtaagtacatcctctcctctctc
cactattcccaggtctcccatcccactttccttttccccagatgcactgt
tcctccatttccttcttataaagcaggtatcccagggatatcaactgaac
agggcataacaattatgctataagacaaggcacaaaccctcatgttaagg
ttggacagggcaacccagtaagaggaaaatggtctgaagtgcaagcaaaa
tagtcagagacatcctccatacccattcttaagagtcctacaaaaactcc
aagtgaaacaaccacagcatttgtgcagagcgccaactgcaaacctatgc
aggctctgtggttccatcttcagttactttgaatccctcgtatatacctc
gtatagctctgtgttcagtattctagcatgccatacagctaggcatgatg
gcacatgcatataatttcattaattgggaggtgacatatgtgcagattca
aggccaccctgagatatagaggactccaccttgaaataataaaaagtgct
ataagagacatagtatttaatatattatgtaacacatataacatacatgc
aaccaccaccaccatgtacacacaacaatattcagaaacatcacattagt
agtattgactcccactcttacagctgtaaggcgagtcaaagaatgactgt
ggccaattcatcctctatgtaaaagacacttcttgtgaataactgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36731110_36732073
seq2: B6Ng01-142N08.b_43_1006 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCAAGTTTGCAGTGTTTCTGGGTCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCAAGTTTGCAGTGTTTCTGGGTCTTGCT  50

seq1  AATGGTGCAAATGGTGATGTTAGCATAATAAGAAAGGTTATGTTAGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGCAAATGGTGATGTTAGCATAATAAGAAAGGTTATGTTAGCATC  100

seq1  TGCAGTGATTTCCCCCTTTAAGTCATACTTTTAGAAAGATATTTTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGATTTCCCCCTTTAAGTCATACTTTTAGAAAGATATTTTATGAA  150

seq1  TAGAAACACTACCAGTAGGCATGCACTATAAGTGCCTGAAAATTTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACACTACCAGTAGGCATGCACTATAAGTGCCTGAAAATTTTTAAT  200

seq1  GAACCTTTCTAATCACTGTAACCTAACCACACTCAGCACATGTCTAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTCTAATCACTGTAACCTAACCACACTCAGCACATGTCTAGAAC  250

seq1  TGATGATCCTTCAGTGTTGCTAATGTCCTGTGCAGTCACGGGTCACAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCCTTCAGTGTTGCTAATGTCCTGTGCAGTCACGGGTCACAGCG  300

seq1  CAGTTGTTATTACTGGTGTGCCCTCATTCTTGTTTCTCATTTCTAGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTATTACTGGTGTGCCCTCATTCTTGTTTCTCATTTCTAGTGAC  350

seq1  ACAAATGAACAAGACCTACCCTTACAGAGTGATAGCATTCATTCATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAACAAGACCTACCCTTACAGAGTGATAGCATTCATTCATGCCT  400

seq1  TCCTTCCTTATAATTTTTAGAATACACATAGAATGGAATCATCTTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTATAATTTTTAGAATACACATAGAATGGAATCATCTTTTAAA  450

seq1  ATGGCCCTAAATTTCAATTATTGGGAAAAACACTGAATTGTAAGTGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTAAATTTCAATTATTGGGAAAAACACTGAATTGTAAGTGATCA  500

seq1  AAAATTATTGGCATAGTGGTGTTTTATTGTATGCATAGAATTCTAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTGGCATAGTGGTGTTTTATTGTATGCATAGAATTCTAAGGAG  550

seq1  AATTTCTATGGGTCATTTGTAATTTCTTTGTTGGAAGAAGATGTTATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATGGGTCATTTGTAATTTCTTTGTTGGAAGAAGATGTTATTAC  600

seq1  AATTTTTAGAACCACCTTATCCACACTCACCTCTCCTTTATTAGCAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGAACCACCTTATCCACACTCACCTCTCCTTTATTAGCAGAGG  650

seq1  CTGATTCTAGCCTAGCAGTTTGACTTCTAATCTGTGTTAAAATATTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTAGCCTAGCAGTTTGACTTCTAATCTGTGTTAAAATATTTGGA  700

seq1  CAGGAAAAAACTATAGCCAATGAAAATCACAGAATAGCATTGTGAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAAACTATAGCCAATGAAAATCACAGAATAGCATTGTGAAACCT  750

seq1  GGATGACACATGAGAATAGTGAACCAAATGTCAGAGTACAAGTTCGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACACATGAGAATAGTGAACCAAATGTCAGAGTACAAGTTCGGAAC  800

seq1  CCATCAAAACTGCATCATAAAGGAAACCACTTTAAATTTACATCATAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAACTGCATCATAAAGGAAACCACTTTAAATTTACATCATAATT  850

seq1  AAAAACTAAAACCCCTATTCTTCTATTCTCATATCATTTCTACCCCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAAACCCCTATTCTTCTATTCTCATATCATTTCTACCCCTACC  900

seq1  TAGGTGCTTTCCAAGACAATCCATTGGGAAAGCTGTGTTTTCCATTGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCTTTCCAAGACAATCCATTGGGAAAGCTGTGTTTTCCATTGTAT  950

seq1  TGGTTCCTGAATTC  964
      ||||||||||||||
seq2  TGGTTCCTGAATTC  964

seq1: chr4_36565838_36567041
seq2: B6Ng01-142N08.g_66_1264

seq1  GAATTCCTTGAGGATTAAGGCAGGAACAAAGTAAAAAATGTCTTTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAGGATTAAGGCAGGAACAAAGTAAAAAATGTCTTTTATTG  50

seq1  AATCTTCTTATTCTCTGCTATGAAAATTAATTATTCATTGAAAAGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTATTCTCTGCTATGAAAATTAATTATTCATTGAAAAGACAGT  100

seq1  TGCAAAATATGTACAATGTGTGTGGTTTTACCCTACATAGCATCTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATATGTACAATGTGTGTGGTTTTACCCTACATAGCATCTTTTCA  150

seq1  AAAATTAATTATAGCAAAGAGTTTCAATTCAAAAGGAAATAATTAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATTATAGCAAAGAGTTTCAATTCAAAAGGAAATAATTAAAAGA  200

seq1  AATATGGGGGAATTTAGAGATCACAGTGTTATTTTTAAATAAATTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGGGGAATTTAGAGATCACAGTGTTATTTTTAAATAAATTGAAGA  250

seq1  ATTTACAACTTAACAAATATTTCATACACTTTAATTTCTGTTCAAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAACTTAACAAATATTTCATACACTTTAATTTCTGTTCAAATTTA  300

seq1  CTTGTTTATATCAATATTCAATATTTTACTAAATCTGATTTTGAATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTATATCAATATTCAATATTTTACTAAATCTGATTTTGAATGTTG  350

seq1  TAATGTGACAAATACTAATTTGTTATACATTTCTCTTCTATGAAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGACAAATACTAATTTGTTATACATTTCTCTTCTATGAAGAAAAA  400

seq1  CTTTTAGTTCGTCTAAGACACATAAAAATTTTTTTGGCATTTATACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTTCGTCTAAGACACATAAAAATTTTTTTGGCATTTATACATTT  450

seq1  AAAAAATATTTTCTCATACAGTACATTGTAAGTACATCCTCTCCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTTTCTCATACAGTACATTGTAAGTACATCCTCTCCTCTCTC  500

seq1  CACTATTCCCAGGTCTCCCATCCCACTTTCCTTTTCCCCAGATGCACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTCCCAGGTCTCCCATCCCACTTTCCTTTTCCCCAGATGCACTGT  550

seq1  TCCTCCATTTCCTTCTTATAAAGCAGGTATCCCAGGGATATCAACTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTTCCTTCTTATAAAGCAGGTATCCCAGGGATATCAACTGAAC  600

seq1  AGGGCATAACAATTATGCTATAAGACAAGGCACAAACCCTCATGTTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATAACAATTATGCTATAAGACAAGGCACAAACCCTCATGTTAAGG  650

seq1  TTGGACAGGGCAACCCAGTAAGAGGAAAATGGTCTGAAGTGCAAGCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGGGCAACCCAGTAAGAGGAAAATGGTCTGAAGTGCAAGCAAAA  700

seq1  TAGTCAGAGACATCCTCCATACCCATTCTTAAGAGTCCTACAAAAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAGACATCCTCCATACCCATTCTTAAGAGTCCTACAAAAACTCC  750

seq1  AAGTGAAACAACCACAGCATTTGTGCAGAGCGCCAACTGCAAACCTATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAACAACCACAGCATTTGTGCAGAGCGCCAACTGCAAACCTATGC  800

seq1  AGGCTCTGTGGTTCCATCTTCAGTTACTTTGAATCCCTCGTATATACCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTGGTTCCATCTTCAGTTACTTTGAATCCCTCGTATATACCTC  850

seq1  GTATAGCTCTGTGTTCAGTATTCTAGCATGCCATACAGCTAGGCATGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTCTGTGTTCAGTATTCTAGCATGCCATACAGCTAGGCATGATG  900

seq1  GCACATGCATATAATTTCATTAATTGGGAGGTGACATATGTGCAGATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCATATAATTTCATTAATTGGGAGGTGACATATGTGCAGATTCA  950

seq1  AGGCCACCCTGAGATATAGAGGACTCCACCTTGAAATAATAAAAAGTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCCTGAGATATAGAGGACTCCACCTTGAAATAATAAAAAGTGCT  1000

seq1  ATAAGAGACATAAGTATTTAAATATAATTATGTAAACACATAT-ACATAC  1049
      ||||||||||| ||||||| ||||| ||||||| ||||||||| ||||||
seq2  ATAAGAGACAT-AGTATTT-AATAT-ATTATGT-AACACATATAACATAC  1046

seq1  ATGCAAACACACACACACATGTACACACAAACCAATA-TCAGAAACATCA  1098
      |||||| ||| |||   |||||||||||||  ||||| ||||||||||||
seq2  ATGCAACCAC-CACCACCATGTACACACAA--CAATATTCAGAAACATCA  1093

seq1  CATTAGTAGTAATGACTCCAACTCTACCAGCTGTAGGCAGAGTCAAAG-A  1147
      ||||||||||| ||||||| |||||  |||||||| |  ||||||||| |
seq2  CATTAGTAGTATTGACTCCCACTCTTACAGCTGTAAGGCGAGTCAAAGAA  1143

seq1  TGACTGT-GCACATTCATTCCTC-ATGTTAAAAAGACAC-TCCTGTGGAT  1194
      ||||||| ||  ||||| ||||| ||||  ||||||||| || |||| ||
seq2  TGACTGTGGCCAATTCA-TCCTCTATGT--AAAAGACACTTCTTGTGAAT  1190

seq1  GCACTGCTGA  1204
        ||||||||
seq2  -AACTGCTGA  1199