BAC Information

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BAC

Clone NameB6Ng01-143A13
Chromosome4 (Build37)
Map Location 33,247,599 - 33,343,903
singlet/doubletdoublet
Overlap geneGabrr1, Acy1l2, Srrp, Pnrc1
Upstream geneLOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2
Downstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A13.bB6Ng01-143A13.g
ACCDH941079DH941080
length1,133907
definitionDH941079|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A13, 5' end.DH941080|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,247,599 - 33,248,760)(33,342,999 - 33,343,903)
sequence
gaattcctgggtaaggacctgcattggggagaggggttaagataaggttc
ccctgtgtatccctggatgttctggaactcactctgtggaccaactggcg
tcatactcagagatctgcctgcctctgcctcctgagtgctgagatcaaag
gtgtgtgcgctatgctgcctggtcaggacctgcattttcaatatgtccct
ctccccatcccaagcactgagctcacgtagtcacaggcattactactgct
gagacagctcaggctgcaagggacagggcagcctaccaggcttcaatgaa
atggtttggagttggcccttaggataaccctaatcctctgtgatttgatg
ttttccaaacaaatgttctgagcttaatttaaaatcctgggcaatttccc
acaggcagatgccctgttctctagcagttgctagccatcacacgccaaca
agtactgttctaaatacatgtgtgcttccatattgaaatctgccccctat
aaataaaatgatcctggtagaaccgatgtcaagatactcaaggtcctcct
tctggacgggcacactggtggacaggcacactggtccagcatggggtggc
tgtaggctgaagggacaggctcaggattataggaattttatgacacaaag
gactctgtgttaaaataaaccccatgctcaccacctgattgtgtgtgtct
atatctcctttcttgaaacaatggaaagaagtatccatgtgctaaaatgt
ctggagctttctgcagaaaggatgagatgtggtgctgtatgtcagtggac
agaggaggaagtggagatgaggggcagagaacctgggagagactcatgag
agccagctcttgagagacaggaggatgttcacaagatgggacaggtgcta
aatgtctaggccaagggagacaagagaccgaggtggttggagtcgaggct
agagtgtctggtgaagcagcacagctatttctcacgttatggcagcatca
cacgtgctgacatgtccaccatcatcacggcgtgatgcttcatgccgagt
gtctacatcaagctgttggacactactctggtcagcttgtgtcgcttcct
tccggtgctggagttcgcagcttcactacctga
gaattcaagggcagctggctccatctacagagcaaattccaagctagtct
acccagagctacacagtgagatcttttctcaaaacaaaaggaatgaagaa
ggaagggatgaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggacggactgattcattcattccatggttctt
actgaacgtgtaggaaatacctgcatgtactttctctccattaccccctt
aattaacttttatcatgtaaggctggttcccccaaaatattgaaacagaa
aatacatgggaagctttttttatttgttttggagactatttgtttacttt
accatcctatgaccaccgtgtgccctgtgtatatatgcctggtgcccaca
gagttcagaagagggcatcggaccccctggaactggaatgtcagatagtt
gtgagcctccatgtggatgctgagaactggacctgaacccaggtcctctg
caagaacagcagatgctctaaaccattaagccatctctccaaacttaccc
cacccccacccaaaccctttttaaagacatttacttgtttgcttttattt
tctttctttcctttttatcctttctttttcttagaaaaaggctcactatg
tatgtttggctagaatagaactcaccctgttacccagactagctttgaac
tcatgagcatctttctttatctcaacttctcaagagttaagattgttttt
aaaattgacacagagtctcatataatccaggcaggacttgatctcactag
gagactaaggatggccttggaattcctggtcttctaccaaataatgagaa
tatacatgttgggctacttggtcaagaatcttgaaataatttaaaatttg
tttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_33247599_33248760
seq2: B6Ng01-143A13.b_47_1179

seq1  GAATTCCTGGGTAAGGACCTGCATTGGGGAGAGGGGTTAAGATAAGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGTAAGGACCTGCATTGGGGAGAGGGGTTAAGATAAGGTTC  50

seq1  CCCTGTGTATCCCTGGATGTTCTGGAACTCACTCTGTGGACCAACTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTATCCCTGGATGTTCTGGAACTCACTCTGTGGACCAACTGGCG  100

seq1  TCATACTCAGAGATCTGCCTGCCTCTGCCTCCTGAGTGCTGAGATCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCAGAGATCTGCCTGCCTCTGCCTCCTGAGTGCTGAGATCAAAG  150

seq1  GTGTGTGCGCTATGCTGCCTGGTCAGGACCTGCATTTTCAATATGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGCTATGCTGCCTGGTCAGGACCTGCATTTTCAATATGTCCCT  200

seq1  CTCCCCATCCCAAGCACTGAGCTCACGTAGTCACAGGCATTACTACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATCCCAAGCACTGAGCTCACGTAGTCACAGGCATTACTACTGCT  250

seq1  GAGACAGCTCAGGCTGCAAGGGACAGGGCAGCCTACCAGGCTTCAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTCAGGCTGCAAGGGACAGGGCAGCCTACCAGGCTTCAATGAA  300

seq1  ATGGTTTGGAGTTGGCCCTTAGGATAACCCTAATCCTCTGTGATTTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGGAGTTGGCCCTTAGGATAACCCTAATCCTCTGTGATTTGATG  350

seq1  TTTTCCAAACAAATGTTCTGAGCTTAATTTAAAATCCTGGGCAATTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAACAAATGTTCTGAGCTTAATTTAAAATCCTGGGCAATTTCCC  400

seq1  ACAGGCAGATGCCCTGTTCTCTAGCAGTTGCTAGCCATCACACGCCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGATGCCCTGTTCTCTAGCAGTTGCTAGCCATCACACGCCAACA  450

seq1  AGTACTGTTCTAAATACATGTGTGCTTCCATATTGAAATCTGCCCCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTTCTAAATACATGTGTGCTTCCATATTGAAATCTGCCCCCTAT  500

seq1  AAATAAAATGATCCTGGTAGAACCGATGTCAAGATACTCAAGGTCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGATCCTGGTAGAACCGATGTCAAGATACTCAAGGTCCTCCT  550

seq1  TCTGGACGGGCACACTGGTGGACAGGCACACTGGTCCAGCATGGGGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACGGGCACACTGGTGGACAGGCACACTGGTCCAGCATGGGGTGGC  600

seq1  TGTAGGCTGAAGGGACAGGCTCAGGATTATAGGAATTTTATGACACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTGAAGGGACAGGCTCAGGATTATAGGAATTTTATGACACAAAG  650

seq1  GACTCTGTGTTAAAATAAACCCCATGCTCACCACCTGATTGTGTGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGTTAAAATAAACCCCATGCTCACCACCTGATTGTGTGTGTCT  700

seq1  ATATCTCCTTTCTTGAAACAATGGAAAGAAGTATCCATGTGCTAAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCTTTCTTGAAACAATGGAAAGAAGTATCCATGTGCTAAAATGT  750

seq1  CTGGAGCTTTCTGCAGAAAGGATGAGATGTGGTGCTGTATGTCAGGTGGA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGAGCTTTCTGCAGAAAGGATGAGATGTGGTGCTGTATGTCA-GTGGA  799

seq1  CAGAGGAGGAAGTGGAGATGAGGGGCAGAGAACCTGGGAGAGACTCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGGAAGTGGAGATGAGGGGCAGAGAACCTGGGAGAGACTCATGA  849

seq1  GAGCCAGCTCTTGAGAGACAGGAGGATGTTCACAAGAAGGGAACAGGTGC  900
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  GAGCCAGCTCTTGAGAGACAGGAGGATGTTCACAAGATGGG-ACAGGTGC  898

seq1  TAAATGTCTAGGCCAAGGGAGAACAAGAGACCGAGGTGGTTGGAGGTCGA  950
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  TAAATGTCTAGGCCAAGGGAG-ACAAGAGACCGAGGTGGTTGGA-GTCGA  946

seq1  GGCCTAGAGTGTCTGGTGAAGGCCAGCACAAGCTTATTTCTCACGGTTTA  1000
      || ||||||||||||||||||  |||||| ||| |||||||||||  |||
seq2  GG-CTAGAGTGTCTGGTGAAG--CAGCAC-AGC-TATTTCTCACG--TTA  989

seq1  TGGCAGGCATCACCACGGTGCTGACCATGTCCACCATCATCACGGGCGTG  1050
      ||||| |||||| ||| ||||||| |||||||||||||||||| ||||||
seq2  TGGCA-GCATCA-CAC-GTGCTGA-CATGTCCACCATCATCAC-GGCGTG  1034

seq1  AATGCCTCCATGCCCCGAGTGTCCTACATCAAAGCTG-TGGACATCTACC  1099
       ||| || ||||  |||||||| ||||||| |||||| |||||| ||| |
seq2  -ATG-CTTCATG--CCGAGTGT-CTACATC-AAGCTGTTGGACA-CTA-C  1076

seq1  TCTGGGTCAGCTTTGTGTTCGTCTTCCTCTCCGTGCTGGAGTACGCAGCT  1149
      ||| ||||||| ||||| ||| ||||||  | |||||||||| |||||||
seq2  TCT-GGTCAGC-TTGTG-TCG-CTTCCTTCCGGTGCTGGAGTTCGCAGCT  1122

seq1  GTCAACTACCTGA  1162
       || |||||||||
seq2  -TC-ACTACCTGA  1133

seq1: chr4_33342999_33343903
seq2: B6Ng01-143A13.g_68_974 (reverse)

seq1  TTAAAAACAAATTTTAAAATATATTTCAAGA-TCTTGACCAAGTAG-CCA  48
      ||||||||||||||||||   |||||||||| |||||||||||||| |||
seq2  TTAAAAACAAATTTTAAA--TTATTTCAAGATTCTTGACCAAGTAGCCCA  48

seq1  ACATGTATAATCTCAATATTTGGTAAGAAGACCAGGAATT-CAAGGCCAT  97
      ||||||||| ||||| |||||||| ||||||||||||||| |||||||||
seq2  ACATGTATATTCTCATTATTTGGT-AGAAGACCAGGAATTCCAAGGCCAT  97

seq1  CCTTAGTCTCCTAGTGAGATCAAGTCCTGCCTGGATTATATGAGACTCTG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTCTCCTAGTGAGATCAAGTCCTGCCTGGATTATATGAGACTCTG  147

seq1  TGTCAATTTTAAAAACAATCTTAACTCTTGAGAAGTTGAGATAAGGAAGA  197
      |||||||||||||||||||||||||||||||||||||||||||| |||  
seq2  TGTCAATTTTAAAAACAATCTTAACTCTTGAGAAGTTGAGATAAAGAAAG  197

seq1  TTGCTCATGAGTTCAAAGCTAGTCTGGGTAACAGGGTGAGTTCTATTCTA  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATGAGTTCAAAGCTAGTCTGGGTAACAGGGTGAGTTCTATTCTA  247

seq1  GCCAAACATACATAGTGAGCCTTTTTCTAAGAAAAAGAAAGGAT-AAAAG  296
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCAAACATACATAGTGAGCCTTTTTCTAAGAAAAAGAAAGGATAAAAAG  297

seq1  GAAAGAAAGAAAATAAAAGCAAACAAGTAAATGTCTTT-AAAAGGGTTTG  345
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAAGAAAGAAAATAAAAGCAAACAAGTAAATGTCTTTAAAAAGGGTTTG  347

seq1  GGTGGGGGTGGGGTAAGTTTGGAGAGATGGCTTAATGGTTTAGAGCATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGGGGTAAGTTTGGAGAGATGGCTTAATGGTTTAGAGCATCT  397

seq1  GCTGTTCTTGCAGAGGACCTGGGTTCAGGTCCAGTTCTCAGCATCCACAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTTGCAGAGGACCTGGGTTCAGGTCCAGTTCTCAGCATCCACAT  447

seq1  GGAGGCTCACAACTATCTGACATTCCAGTTCCAGGGGGTCCGATGCCCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCACAACTATCTGACATTCCAGTTCCAGGGGGTCCGATGCCCTC  497

seq1  TTCTGAACTCTGTGGGCACCAGGCATATATACACAGGGCACACGGTGGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTCTGTGGGCACCAGGCATATATACACAGGGCACACGGTGGTC  547

seq1  ATAGGATGGTAAAGTAAACAAATAGTCTCCAAAACAAATAAAAAAAGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGGTAAAGTAAACAAATAGTCTCCAAAACAAATAAAAAAAGCTT  597

seq1  CCCATGTATTTTCTGTTTCAATATTTTGGGGGAACCAGCCTTACATGATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTATTTTCTGTTTCAATATTTTGGGGGAACCAGCCTTACATGATA  647

seq1  AAAGTTAATTAAGGGGGTAATGGAGAGAAAGTACATGCAGGTATTTCCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAATTAAGGGGGTAATGGAGAGAAAGTACATGCAGGTATTTCCTA  697

seq1  CACGTTCAGTAAGAACCATGGAATGAATGAATCAGTCCGTCCTTCCTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCAGTAAGAACCATGGAATGAATGAATCAGTCCGTCCTTCCTTCC  747

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  797

seq1  CATCCCTTCCTTCTTCATTCCTTTTGTTTTGAGAAAAGATCTCACTGTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTCCTTCTTCATTCCTTTTGTTTTGAGAAAAGATCTCACTGTGT  847

seq1  AGCTCTGGGTAGACTAGCTTGGAATTTGCTCTGTAGATGGAGCCAGCTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGGTAGACTAGCTTGGAATTTGCTCTGTAGATGGAGCCAGCTGC  897

seq1  CCTTGAATTC  905
      ||||||||||
seq2  CCTTGAATTC  907