BAC Information

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BAC

Clone NameB6Ng01-143E04
Chromosome1 (Build37)4 (Build37)
Map Location 74,239,064 - 74,240,171143,305,916 - 143,306,013
singlet/doubletsingletsinglet
Overlap geneIl8ra
Upstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb
Downstream geneArpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E04.bB6Ng01-143E04.g
ACCDH941243DH941244
length1,092947
definitionDH941243|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E04, 5' end.DH941244|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,239,064 - 74,240,171)(143,305,916 - 143,306,013)
sequence
gaattccttcaggagtgagaccatcttgcacaggggtgtgccaaaaatcc
agcccttcaatttggagacagccaagaagggcagggtcaatgaaaagagt
aggtcggcgatggctaggttcagcacgtagacatccatgacggatcgggt
ccttcgcctgtataagataaccagcatcaccagcgagtttcccagcaagc
tcagaagggacaccagtgcataaaagacaactaaagcctgcctgttggtt
attggaactctcttacaggggatgaaataatctccagtgggcagcattcc
cgtgatatttccaaattctttctcaaagtcaccctcaggattagtccaga
tgaaatattcagcctcggccattgtttgatctaggtgaaaggtaagaaag
agagataagatttagtaaccaaattcaagtgttgtgagtgttgagggggt
agtattggcttctctgttgccttgacaaccaaagttcaccccctttgcct
tcaacttgaactttggtaggttagcttcctaatgctgtcaaagtccttgg
acagtcagtctgagtatagaataaaacccatgggagatacctttgccttc
agttggctctacagttctcaactctatgcccagctcttccttgtctcctc
ttaaccatctttgtcctcagccacgcccctgggttcagatacagtcacca
ggttgttcttacactcagggaagagccagcacacagcaaacggaaggagg
caaggtgtatctgggcgtcccctccaaccttatgtctatatatgccccct
cattattgtttgcaatttttgtaaagacatattatttttcattgctttta
tttatgtataagtgcatatgaacttgtctgtgtgtctatatgtagaggtc
agagaaggcatctgatccctttggaactggagctaccagagtagcgagct
gctcaaagtggtcctaggaccaaatcctcagagcactcatgctctaacca
ctgagctttcttccagccctgtttgccttcttaaacctatctggagaaaa
aggggatactcagattacctacactgtactcgcgccctgtct
gaattctgatgcatgaggtaatatagaaaccccttataaacatcgtgctg
gattgggtatggtagcccatgcctgcctgcagtcctggcacttgggaagg
tgagacaggaggtttgccatacgttcagggtcacctggtctacaaagtga
aattaagaccaaatgggacttcatttgtggctgccatcagttctttggag
ctcaagtgttacacgtataacatgtaatgatgcgtacagtggctttcagg
tttgcccaccattatggtttgaatggtgtaaccccacaacatttatgcac
caaagtgatgaatcatattaagaggtggaacccttgggggtgctttgagg
tcacaaggcttcctactctcacaggtgagatttgaggggctggctgggga
tggagctcacttggtagtgtctgcctagtgggttccatcaccagcataaa
cagggtatgtagctcacaccggaagctaagagataccggcaaggtggcta
gcctatgcttcctgagtccccgtctgaacctcttcttcctgcaaaaaaca
aaaaacaaaaacaacaaacaaataaaccaacaaacaaaaacccaagcaag
caaacaagtgtgcagaactgggctggagaaatgggtgggcagttacagca
ggcacagctttggcagaggagctgattcagttcccaatatccatgtcagg
ccactccagctgcaggggatttgacatcctcttctgggtgctcggcagtg
cccacacttgtgcgtgcatatgtacacacacacacacacacacacacaca
cacacacgagagaagctttctgtccgttcacctccatgctgaccttgaac
tgaaaatctccttccttagcctcccaaatattggcatctcagtgtgagcc
gccacactcggctcgggtatttcttttaccctttttttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74239064_74240171
seq2: B6Ng01-143E04.b_49_1140

seq1  GAATTCCTTCAGGAGTGAGACCATCTTGCACAGGGGTGTGCCAAAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGGAGTGAGACCATCTTGCACAGGGGTGTGCCAAAAATCC  50

seq1  AGCCCTTCAATTTGGAGACAGCCAAGAAGGGCAGGGTCAATGAAAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCAATTTGGAGACAGCCAAGAAGGGCAGGGTCAATGAAAAGAGT  100

seq1  AGGTCGGCGATGGCTAGGTTCAGCACGTAGACATCCATGACGGATCGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGGCGATGGCTAGGTTCAGCACGTAGACATCCATGACGGATCGGGT  150

seq1  CCTTCGCCTGTATAAGATAACCAGCATCACCAGCGAGTTTCCCAGCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGCCTGTATAAGATAACCAGCATCACCAGCGAGTTTCCCAGCAAGC  200

seq1  TCAGAAGGGACACCAGTGCATAAAAGACAACTAAAGCCTGCCTGTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGGACACCAGTGCATAAAAGACAACTAAAGCCTGCCTGTTGGTT  250

seq1  ATTGGAACTCTCTTACAGGGGATGAAATAATCTCCAGTGGGCAGCATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACTCTCTTACAGGGGATGAAATAATCTCCAGTGGGCAGCATTCC  300

seq1  CGTGATATTTCCAAATTCTTTCTCAAAGTCACCCTCAGGATTAGTCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATATTTCCAAATTCTTTCTCAAAGTCACCCTCAGGATTAGTCCAGA  350

seq1  TGAAATATTCAGCCTCGGCCATTGTTTGATCTAGGTGAAAGGTAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTCAGCCTCGGCCATTGTTTGATCTAGGTGAAAGGTAAGAAAG  400

seq1  AGAGATAAGATTTAGTAACCAAATTCAAGTGTTGTGAGTGTTGAGGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAGATTTAGTAACCAAATTCAAGTGTTGTGAGTGTTGAGGGGGT  450

seq1  AGTATTGGCTTCTCTGTTGCCTTGACAACCAAAGTTCACCCCCTTTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGCTTCTCTGTTGCCTTGACAACCAAAGTTCACCCCCTTTGCCT  500

seq1  TCAACTTGAACTTTGGTAGGTTAGCTTCCTAATGCTGTCAAAGTCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGAACTTTGGTAGGTTAGCTTCCTAATGCTGTCAAAGTCCTTGG  550

seq1  ACAGTCAGTCTGAGTATAGAATAAAACCCATGGGAGATACCTTTGCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGTCTGAGTATAGAATAAAACCCATGGGAGATACCTTTGCCTTC  600

seq1  AGTTGGCTCTACAGTTCTCAACTCTATGCCCAGCTCTTCCTTGTCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTCTACAGTTCTCAACTCTATGCCCAGCTCTTCCTTGTCTCCTC  650

seq1  TTAACCATCTTTGTCCTCAGCCACGCCCCTGGGTTCAGATACAGTCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATCTTTGTCCTCAGCCACGCCCCTGGGTTCAGATACAGTCACCA  700

seq1  GGTTGTTCTTACACTCAGGGAAGAGCCAGCACACAGCAAACGGAAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCTTACACTCAGGGAAGAGCCAGCACACAGCAAACGGAAGGAGG  750

seq1  CAAGGTGTATCTGGGCGTCCCCTCCAACCTTATGTCTTATATATGCCCCC  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAGGTGTATCTGGGCGTCCCCTCCAACCTTATGTC-TATATATGCCCCC  799

seq1  TCATTATTGTTTGCAATTTTTGTAAAGACATATTATTTTTCATTGCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTGTTTGCAATTTTTGTAAAGACATATTATTTTTCATTGCTTTT  849

seq1  ATTTATGTATAAGTGCATATGAACTTGTCTGTGTGTCTATATGTAGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTATAAGTGCATATGAACTTGTCTGTGTGTCTATATGTAGAGGT  899

seq1  CAGAAGAAGGCATCTGATCCC-TTGGAACTGGAGCTACCAGGAGTAGCGA  949
      ||| ||||||||||||||||| |||||||||||||||||| |||||||||
seq2  CAG-AGAAGGCATCTGATCCCTTTGGAACTGGAGCTACCA-GAGTAGCGA  947

seq1  GCTGCCCAAAGTGGGTCCTAGGAACCAAATCCTCAGGAGCACTCCATGCT  999
      ||||| |||||| ||||||||| |||||||||||| ||||||| ||||||
seq2  GCTGCTCAAAGT-GGTCCTAGG-ACCAAATCCTCA-GAGCACT-CATGCT  993

seq1  CCTAACCACTGAGCTATCTCCCCAGCCCCTTGTTTGCCTTTCTTAAAACC  1049
       |||||||||||||| |||  |||||||  |||||||| ||||| |||||
seq2  -CTAACCACTGAGCTTTCT-TCCAGCCC--TGTTTGCC-TTCTT-AAACC  1037

seq1  TACCTGGAGAAAGAGGTGATAACTTCAGATTACATTACACTGTACTCTGC  1099
      || ||||||||| ||| ||||   |||||||||  |||||||||||| ||
seq2  TATCTGGAGAAAAAGGGGATA--CTCAGATTAC-CTACACTGTACTC-GC  1083

seq1  GCCTTGTCT  1108
      ||| |||||
seq2  GCCCTGTCT  1092

seq1: chr4_143305916_143306013
seq2: B6Ng01-143E04.g_189_629 (reverse)

seq1  TTGTTTTTGTTTTTTGTTTTT--------------GTT------------  24
      |||||||||||||||||||||              |||            
seq2  TTGTTTTTGTTTTTTGTTTTTTGCAGGAAGAAGAGGTTCAGACGGGGACT  50

seq1  --------TTTTTCAAGACA------GGGTATCTCT---------GTAT-  50
               |   | || ||       |||||||||         || | 
seq2  CAGGAAGCATAGGCTAGCCACCTTGCCGGTATCTCTTAGCTTCCGGTGTG  100

seq1  AG-------CCCTGGGTATCC------TGGAACTCACTTTGTAG-----A  82
      ||       |||||  ||| |      |||||| ||||  | ||     |
seq2  AGCTACATACCCTGTTTATGCTGGTGATGGAACCCACTAGGCAGACACTA  150

seq1  CCAGGCTGACCTTGAA----------------------------------  98
      ||| | ||| ||  |                                   
seq2  CCAAG-TGAGCTCCATCCCCAGCCAGCCCCTCAAATCTCACCTGTGAGAG  199

seq1  --------------------------------------------------  98
                                                        
seq2  TAGGAAGCCTTGTGACCTCAAAGCACCCCCAAGGGTTCCACCTCTTAATA  249

seq1  --------------------------------------------------  98
                                                        
seq2  TGATTCATCACTTTGGTGCATAAATGTTGTGGGGTTACACCATTCAAACC  299

seq1  --------------------------------------------------  98
                                                        
seq2  ATAATGGTGGGCAAACCTGAAAGCCACTGTACGCATCATTACATGTTATA  349

seq1  --------------------------------------------------  98
                                                        
seq2  CGTGTAACACTTGAGCTCCAAAGAACTGATGGCAGCCACAAATGAAGTCC  399

seq1  ------------------------------------------  98
                                                
seq2  CATTTGGTCTTAATTTCACTTTGTAGACCAGGTGACCCTGAA  441