BAC Information

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BAC

Clone NameB6Ng01-143G16
Chromosome4 (Build37)
Map Location 36,620,381 - 36,738,191
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143G16.bB6Ng01-143G16.g
ACCDH941357DH941358
length1,1151,000
definitionDH941357|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G16, 5' end.DH941358|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,620,381 - 36,621,422)(36,737,187 - 36,738,191)
sequence
gaattccataggaagactgacagagtcaactctacctggacccttgtggc
tctcagatctgaaccaccaaccaaaaatcatacacaaagactggacccag
gcctccctgctcatatatagcataagtgcagcttgctcttctggtgggtc
ccaaactactgaaagtagggctgtcccaaaggctgtgtcctgtaagtagg
acatgttcttctagctggcctgccttgtctggcctcagtgagaccagaag
caccaatccttgcagagaattgaagttctaggttggggtgataccagggg
gacctcctcacccactcagaggagaaggggagaaaagatcagggaaggat
tcttcgaggtgtgacccggtcaattaacatgatataaagtggataagtaa
aatctgaaataaaataaaataaaagaaaattagcataggactgggcatga
tagtgtataactttaattatagcacccaagaagtacagtcaggtggatct
ctgtgagttccaggccagccttgtctataaaatgagttccaagacagcca
gggctgttatacagagaaaccctgtctcaaaaacaaaacaaatcaaaaca
agaaaagaaaacaaaaatgtttagtttgtgagtaaaatgcacataacagg
ttcacatgtgtgaaagaatgtttaagagaaaaattaaatataaaataatg
gtataatccaagaagggatctacagtcggagtgagttggtcatccattag
gtactctgtatgtgcattcaatgtgtttaaattgagtttcatttctgtat
tttcaaataatgttacgaatgaagctgtgactgtctcatactgtttgcag
cattattgaggctaaaaaatggaagacagtataaattggatgtcagagct
ctggtgctaaatttattacattatgctgaaactttatatgaaatgaattc
ctaagaaaatcttctgcagatattcattcaattatactactgactacata
tcaatagtgatgctatcatcacgtcgaactgtgcatctcagactgactgg
gtttttcttttccttagaaactatttccgagtgacaagaatgttattcaa
tgatgaacattcaca
gaattcacagcaggtgagaggttgatggagaagatttcagtgagcccgaa
gagcatttggggaaaaacttgcaggacagagcacagaaaactgagaagta
agtgcaaagcaataatggaaagttggagaagatatagagagacctgatgt
gaaattggaatcttagtagaaggtgctgggcaataaggtgaagattcttt
agtgatgattaatgctgtcattgcttttattagcaagagttgtacattcc
tatgagtgatggagcacagacattttaaattctcactgacgaactcctgt
agactaacacttggaggaaggcaatacagacagttaaatgtggaaatgga
gaagctttttcacagtgagttgtgcaaatagggtgatccctttcaaacca
tgcctagtactaccaattaaaaattaacaaatataactttgccatattaa
ttaaaacgaggactgaatttttattggcctagcaaacatattgattcagg
tttgatcagcatcaaaagtttttccccctccaaggaaataattcaataat
atgcccaatacagtccatttaccttcaaagaagggatcgttattcattac
aactcaagctattaaaaaaaataaccaatcaacaataaaattgttatata
tctcatattaaattcccatccatatatatcatattaaaatgaattaattg
gatccatggatatgtacatgggagaatatcgataatcataacaagtaaat
tgaaatgtataaacagtatataatgagttattatgggtatatagggttta
tgatgagttgaaaaagttttgttgctgcaaatcaaaataaaacatgatta
taagggaagaggattgttgtaagagaaatatgaagtcatactcctgggta
ctggaataattacatttctagatctgggtagtgatacatcagaatattcc
cttcatgactgattgatggtcagtctaaccttataaagtgtaatgtaatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36620381_36621422
seq2: B6Ng01-143G16.b_140_1160

seq1  ACCCAGGCCTCCCTGCTCATATATAGCATAAGTGCAGCTTGCTCTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCCTCCCTGCTCATATATAGCATAAGTGCAGCTTGCTCTTCTGG  50

seq1  TGGGTCCCAAACTACTGAAAGTAGGGCTGTCCCAAAGGCTGTGTCCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCAAACTACTGAAAGTAGGGCTGTCCCAAAGGCTGTGTCCTGTA  100

seq1  AGTAGGACATGTTCTTCTAGCTGGCCTGCCTTGTCTGGCCTCAGTGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGACATGTTCTTCTAGCTGGCCTGCCTTGTCTGGCCTCAGTGAGAC  150

seq1  CAGAAGCACCAATCCTTGCAGAGAATTGAAGTTCTAGGTTGGGGTGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCACCAATCCTTGCAGAGAATTGAAGTTCTAGGTTGGGGTGATAC  200

seq1  CAGGGGGACCTCCTCACCCACTCAGAGGAGAAGGGGAGAAAAGATCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGACCTCCTCACCCACTCAGAGGAGAAGGGGAGAAAAGATCAGGG  250

seq1  AAGGATTCTTCGAGGTGTGACCCGGTCAATTAACATGATATAAAGTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCTTCGAGGTGTGACCCGGTCAATTAACATGATATAAAGTGGAT  300

seq1  AAGTAAAATCTGAAATAAAATAAAATAAAAGAAAATTAGCATAGGACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATCTGAAATAAAATAAAATAAAAGAAAATTAGCATAGGACTGG  350

seq1  GCATGATAGTGTATAACTTTAATTATAGCACCCAAGAAGTACAGTCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATAGTGTATAACTTTAATTATAGCACCCAAGAAGTACAGTCAGGT  400

seq1  GGATCTCTGTGAGTTCCAGGCCAGCCTTGTCTATAAAATGAGTTCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTGTGAGTTCCAGGCCAGCCTTGTCTATAAAATGAGTTCCAAGA  450

seq1  CAGCCAGGGCTGTTATACAGAGAAACCCTGTCTCAAAAACAAAACAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTGTTATACAGAGAAACCCTGTCTCAAAAACAAAACAAATC  500

seq1  AAAACAAGAAAAGAAAACAAAAATGTTTAGTTTGTGAGTAAAATGCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAAAAGAAAACAAAAATGTTTAGTTTGTGAGTAAAATGCACAT  550

seq1  AACAGGTTCACATGTGTGAAAGAATGTTTAAGAGAAAAATTAAATATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTTCACATGTGTGAAAGAATGTTTAAGAGAAAAATTAAATATAAA  600

seq1  ATAATGGTATAATCCAAGAAGGGATCTACAGTCGGAGTGAGTTGGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGTATAATCCAAGAAGGGATCTACAGTCGGAGTGAGTTGGTCATC  650

seq1  CATTAGGTACTCTGTATGTGCATTCAATGTGTTTAAATTGAGTTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTACTCTGTATGTGCATTCAATGTGTTTAAATTGAGTTTCATTT  700

seq1  CTGTATTTTCAAATAATGTTACGAATGAAGCTGTGACTGTCTCATACTGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTATTTTCAAATAATGTTACGAATGAAGCTGTGACTGTCTCATACT-G  749

seq1  TTTGCAGCATTATTGAGGCTAAAAAATGGAAGACAGTATAAATTGGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCATTATTGAGGCTAAAAAATGGAAGACAGTATAAATTGGATGT  799

seq1  CAGAGCTCTGGTGCTAAATTTA-TACATTAATGCTGAAACCTTTAATATG  849
      |||||||||||||||||||||| |||||| ||||||||||  || |||| 
seq2  CAGAGCTCTGGTGCTAAATTTATTACATT-ATGCTGAAAC--TTTATAT-  845

seq1  GAAATGAATTCCTAAGAAAAATCTCTGCAGAATATCATTCAAATTATACC  899
      ||||||||||||||||||||   ||||||||   |||||| |||||||| 
seq2  GAAATGAATTCCTAAGAAAATCTTCTGCAGATATTCATTC-AATTATAC-  893

seq1  TAACTGACTACAATTATCAAATAGTGATGCTATCATCACCGTCAGAAACT  949
        ||||||||||  |||| ||||||||||||||||||| ||||   ||||
seq2  -TACTGACTACA--TATC-AATAGTGATGCTATCATCA-CGTC--GAACT  936

seq1  GTGGCATCTCAAGACTGACTGGGTTTTTCTTTTCCCCTAGGAAACTATTT  999
      || ||||||| ||||||||||||||||||||||  |||  ||||||||||
seq2  GT-GCATCTC-AGACTGACTGGGTTTTTCTTTT--CCTTAGAAACTATTT  982

seq1  CAGAGTGAACAAGAAATGTTATTTACAATGATGACACA-TCACA  1042
      | ||||| ||||| |||||||||  ||||||||| ||| |||||
seq2  CCGAGTG-ACAAG-AATGTTATT--CAATGATGA-ACATTCACA  1021

seq1: chr4_36737187_36738191
seq2: B6Ng01-143G16.g_66_1065 (reverse)

seq1  AATTAACATTACAAACTTTATAAAGTTTAGACTAGACATTCAATCAGCTA  50
      |||| |||||||  ||||||| ||| ||||||| |||  ||||||||  |
seq2  AATT-ACATTAC--ACTTTAT-AAGGTTAGACT-GACCATCAATCAGTCA  45

seq1  TGAAGGGAATATTCTGATGTATCTACTACCCAGATCTAGAAATGTAA-TA  99
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TGAAGGGAATATTCTGATGTATC-ACTACCCAGATCTAGAAATGTAATTA  94

seq1  TTCCAGTACCCAGGAGTATGACTTCATATTTCTCCTAACAACAATCCTCT  149
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  TTCCAGTACCCAGGAGTATGACTTCATATTTCT-CTTACAACAATCCTCT  143

seq1  T-TCTTATAATCATGTTTTATTTTGATTTGCAGCAACAAAACTTTTTCAA  198
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATAATCATGTTTTATTTTGATTTGCAGCAACAAAACTTTTTCAA  193

seq1  CTCATCATAAACCCTATATAACCATAATAACTCATTATATACTGTTTATA  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCATCATAAACCCTATATACCCATAATAACTCATTATATACTGTTTATA  243

seq1  CATTTCAATTTACTTGTTATGATTATCGATATTCTCCCATGTACATATCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATTTACTTGTTATGATTATCGATATTCTCCCATGTACATATCC  293

seq1  ATGGATCCAATTAATTCATTTTAATATGATATATATGGATGGGAATTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCCAATTAATTCATTTTAATATGATATATATGGATGGGAATTTAA  343

seq1  TATGAGATATATAACAATTTTATTGTTGATTGGTTATTTTTTTTAATAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATATATAACAATTTTATTGTTGATTGGTTATTTTTTTTAATAGC  393

seq1  TTGAGTTGTAATGAATAACGATCCCTTCTTTGAAGGTAAATGGACTGTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGTAATGAATAACGATCCCTTCTTTGAAGGTAAATGGACTGTAT  443

seq1  TGGGCATATTATTGAATTATTTCCTTGGAGGGGGAAAAACTTTTGATGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATATTATTGAATTATTTCCTTGGAGGGGGAAAAACTTTTGATGCT  493

seq1  GATCAAACCTGAATCAATATGTTTGCTAGGCCAATAAAAATTCAGTCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACCTGAATCAATATGTTTGCTAGGCCAATAAAAATTCAGTCCTC  543

seq1  GTTTTAATTAATATGGCAAAGTTATATTTGTTAATTTTTAATTGGTAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTAATATGGCAAAGTTATATTTGTTAATTTTTAATTGGTAGTA  593

seq1  CTAGGCATGGTTTGAAAGGGATCACCCTATTTGCACAACTCACTGTGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATGGTTTGAAAGGGATCACCCTATTTGCACAACTCACTGTGAAA  643

seq1  AAGCTTCTCCATTTCCACATTTAACTGTCTGTATTGCCTTCCTCCAAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTCCATTTCCACATTTAACTGTCTGTATTGCCTTCCTCCAAGTG  693

seq1  TTAGTCTACAGGAGTTCGTCAGTGAGAATTTAAAATGTCTGTGCTCCATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTACAGGAGTTCGTCAGTGAGAATTTAAAATGTCTGTGCTCCATC  743

seq1  ACTCATAGGAATGTACAACTCTTGCTAATAAAAGCAATGACAGCATTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGGAATGTACAACTCTTGCTAATAAAAGCAATGACAGCATTAAT  793

seq1  CATCACTAAAGAATCTTCACCTTATTGCCCAGCACCTTCTACTAAGATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTAAAGAATCTTCACCTTATTGCCCAGCACCTTCTACTAAGATTC  843

seq1  CAATTTCACATCAGGTCTCTCTATATCTTCTCCAACTTTCCATTATTGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCACATCAGGTCTCTCTATATCTTCTCCAACTTTCCATTATTGCT  893

seq1  TTGCACTTACTTCTCAGTTTTCTGTGCTCTGTCCTGCAAGTTTTTCCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTACTTCTCAGTTTTCTGTGCTCTGTCCTGCAAGTTTTTCCCCA  943

seq1  AATGCTCTTCGGGCTCACTGAAATCTTCTCCATCAACCTCTCACCTGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTTCGGGCTCACTGAAATCTTCTCCATCAACCTCTCACCTGCTG  993

seq1  TGAATTC  1005
      |||||||
seq2  TGAATTC  1000