BAC Information

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BAC

Clone NameB6Ng01-143N20
Chromosome4 (Build37)
Map Location 146,816,601 - 146,957,647
singlet/doubletdoublet
Overlap geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream gene2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143N20.bB6Ng01-143N20.g
ACCDH941691DH941692
length1,0361,114
definitionDH941691|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N20, 5' end.DH941692|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,816,601 - 146,817,122)(146,956,525 - 146,957,647)
sequence
gaattctcaacagaggtacaacagtgcacccatggggaagacccagctct
gctgtgctcatgccattgggattacctcacttgcaagccccatatgcagg
gacagctctactgtgctgtgagatgcagggcctgctgtctcagctgctag
gaaggtgaggatcacaatcagctctgctgctctcatgactcccttgaagc
caactcatctgcccccagctagtatcaagggacagtctcctgccaccttc
tgatccaccttccctttatctgcccagttatcagttctcctttattttac
aaatttaggtggggagctggtttacaagaaatcacctgagtgcagactca
ttccttgttcacaactcacaggagaatggaattaacatcaaatataatta
gctctggggctattcataacatttcctcctttctgtccaattaaaagact
attttatctcagatataattgaacataactattattattttgtaatttat
aaagtactagagacctaacacccagtccatcatctttgttaattaaacag
aacctctgtcatggatctttacttaacagacttataattctacatctgga
tatatcttggctttatattgaatgccatcttaaaaccatcctctcagaac
tgttcctctcaaagaaaaaaacctgggttggctaggagactacgcagttt
ttcaaccccatcagaaatccaagaatgactgatattaactgaaaatataa
agaaagcctaacacagcttccaaaacttagccaatttacagagatcacgg
atcacttggatagtcccttacttcaacatgttggagcattggtattcagc
ttattggccagggtcatctgacagacttagagaaacagaaatatttttaa
tatttttattagatattttcccatttacatttccaatgctatcccaaagt
ccccataccctcccccgagaaacagaaatattagactagctactaaggga
cccactagcactcagtagcttactagaaagctcact
gaattctctgatgataattaagacgggatttgtgagtaaagcatttgtca
cattcactacatttgtaaagtttctctcccgtatgaattctctgatgagc
tctcaaattaaatttgtgggtaaagcatttgtcacattcactacatttgt
gaggtttctctcctgtatgaattccctgatgacttctaagatggatctga
tgggtaaagcatttgtcacttttactacttttgtaaggtttctttccatg
ataaattctctgctgagtttgaagtttttctctctgggtaagatatttgt
gaaattcactgcatttgtaagggttcactccagtattttttcgtttcacc
atgtctttatgtttagaaacaaaaaccttctcaaattctgcatttcgctt
gtgttttttcttctgcatgtggattccttgattgagactaatggtagaaa
acaaacttacactgtttacagagtcattgtatttgcaaacttctttagtg
ttcctgggcttaagtcttttttggttccagtattgaagagagctgtgata
agttttgtaaggtgtatattgggggggaatcaagaagcaccttgctaagc
ttgtcccatttagaagacttctcttgaatattcatgtgttcatggacaat
gtactggctgtcttgatccaagaccttcctatactttccacgtatgcaat
gattttctgaaaaaacaaaaacaaaatggggcaattagagatgacatgaa
ttacttatataaggagtaagggactcaataatcagtgagcttatggattc
cgtactctcaggagaggtctctctctctctctctctctctctctctctct
ttttaaatcactacatgtatcctcagaagatctcaatatgatctatatca
aatgactgggaaatgatatagcctgctaaatttattttcaattagacatc
ataccacctcaatattaataacccagaattgcctctgttttaggaaaaag
aagggacaaagaattggaaaagagctgagggaagccatccagagatctgg
acaagatgcgattcttgcactcaacattggactgagccagggaacccatt
gaagagttaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146816601_146817122
seq2: B6Ng01-143N20.b_578_1084

seq1  TCATCTTTGTTAATTAAACAGAACCTCTGTCATGTATCTTTACTTAAAAG  50
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TCATCTTTGTTAATTAAACAGAACCTCTGTCATGGATCTTTACTTAACAG  50

seq1  ACTTATAATTCTACATCTGCATATATCTTGGCTTTATATTGAATGCCATC  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTTATAATTCTACATCTGGATATATCTTGGCTTTATATTGAATGCCATC  100

seq1  TTAAAACCATCCTCTCAGAACTGTTCCTCTCAAAGAAAAAAACCTGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCATCCTCTCAGAACTGTTCCTCTCAAAGAAAAAAACCTGGGTT  150

seq1  GGCTAGGAGACTACGCAGTTTTTCAACCCCATCAGAAATCCAAGAATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGAGACTACGCAGTTTTTCAACCCCATCAGAAATCCAAGAATGAC  200

seq1  TGATATTAACTGAAAATATAAAGAAAGCCTAACACAGCTTCCAAAACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAACTGAAAATATAAAGAAAGCCTAACACAGCTTCCAAAACTTA  250

seq1  GCCAATTTACAGAGATCACGGATCACTTGGACAGTCCCTTACTTCAACAT  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCAATTTACAGAGATCACGGATCACTTGGATAGTCCCTTACTTCAACAT  300

seq1  GTTGGAGCACTGGTATTCAGCTTATTGCCCCGGGGTCATCTGACAGACTT  350
      ||||||||| |||||||||||||||||  || ||||||||||||||||||
seq2  GTTGGAGCATTGGTATTCAGCTTATTG-GCCAGGGTCATCTGACAGACTT  349

seq1  AGAGAAACAGAAATATTTTTTAATATTTTTTATTAGATATTTTCCCCATT  400
      ||||||||||||||| ||||||||| ||||||||||||||||| ||||||
seq2  AGAGAAACAGAAATA-TTTTTAATA-TTTTTATTAGATATTTT-CCCATT  396

seq1  TTCATTTCCAATGCTATCTCAAAAGTCCCCCATACCCTCCCCCCGAGAAA  450
      | |||||||||||||||| | ||||| ||||||||||| |||||||||||
seq2  TACATTTCCAATGCTATC-CCAAAGT-CCCCATACCCT-CCCCCGAGAAA  443

seq1  CAGAAATATTAAGGAGTAGCTTACTAAGGGGACCCACTTAGCCAACTCAG  500
      |||||||||||  || |||| |||||| ||||||||| ||||  ||||| 
seq2  CAGAAATATTA--GACTAGC-TACTAA-GGGACCCAC-TAGC--ACTCA-  485

seq1  GTAGCTTACTAGAAAGCTCACT  522
      ||||||||||||||||||||||
seq2  GTAGCTTACTAGAAAGCTCACT  507

seq1: chr4_146956525_146957647
seq2: B6Ng01-143N20.g_69_1182 (reverse)

seq1  TCCCTTAACTCCTTCATTGTGGTCCCCTTGCTCAGTCCAATGGTTGGCTG  50
      |||||||||| ||||| || ||| |||| |||||||||||| ||||  ||
seq2  TCCCTTAACT-CTTCAATG-GGTTCCCTGGCTCAGTCCAAT-GTTGAGTG  47

seq1  CAAGGATCTGCATCCTTTTCATCCAG-TCTCTGGATGGCCTTCCCTTCAG  99
      |||| ||| |||||    |  ||||| ||||||||||| |||||| ||||
seq2  CAAGAATC-GCATC----TTGTCCAGATCTCTGGATGG-CTTCCC-TCAG  90

seq1  CCTCTTTTCC-ATTCTTTGTCCC-TCTTTTTCCTTAAGACAGGAGCAATT  147
       ||||||||| |||||||||||| ||||||||| ||| ||||  ||||||
seq2  -CTCTTTTCCAATTCTTTGTCCCTTCTTTTTCC-TAAAACAGAGGCAATT  138

seq1  CTGGGTTATTATATTTGAGGTGGTATGATGTCTAATTTGAAAATAAAATT  197
      |||||||||||   ||||||||||||||||||||| |||||||| |||||
seq2  CTGGGTTATTAATATTGAGGTGGTATGATGTCTAA-TTGAAAAT-AAATT  186

seq1  TAGCAGGCTATTATCATTT-CCAGTCATTTGATATAGATCATATTTGAGG  246
      |||||||||| |||||||| ||||||||||||||||||||||| |||| |
seq2  TAGCAGGCTA-TATCATTTCCCAGTCATTTGATATAGATCATA-TTGA-G  233

seq1  TTCTTCTGAGGATACATGTAGTGATTTAAAA--AGAAAGAGAGAGAGAGA  294
       ||||||||||||||||||||||||||||||  ||| |||||||||||||
seq2  ATCTTCTGAGGATACATGTAGTGATTTAAAAAGAGAGAGAGAGAGAGAGA  283

seq1  GAGAGAGAGAGAGACCTCTCTTGAGAGTAC-GAATCCATAAGCTCACTGA  343
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  GAGAGAGAGAGAGACCTCTCCTGAGAGTACGGAATCCATAAGCTCACTGA  333

seq1  TTATTGAGTCCCTTACTCCTTATATAAGTAATTCATGTCATCTCTAATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGTCCCTTACTCCTTATATAAGTAATTCATGTCATCTCTAATTG  383

seq1  CCCCATTTTGTTTTTGTTTTTTCAGAAAATCATTGCATACGTGGAAAGTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTTGTTTTTGTTTTTTCAGAAAATCATTGCATACGTGGAAAGTA  433

seq1  TAGGAAGGTCTTGGATCAAGACAGCCAGTACATTGTCCATGAACACATGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGTCTTGGATCAAGACAGCCAGTACATTGTCCATGAACACATGA  483

seq1  ATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGCAAGGTGCTTCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGCAAGGTGCTTCTT  533

seq1  GATT-CCCCCCAATATACACCTTACAAAACTTATCACAGCTCTCTTCAAT  592
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCCCCCAATATACACCTTACAAAACTTATCACAGCTCTCTTCAAT  583

seq1  ACTGGAACCAAAAAAGACTTAAGCCCAGGAACACTAAAGAAGTTTGCAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACCAAAAAAGACTTAAGCCCAGGAACACTAAAGAAGTTTGCAAA  633

seq1  TACAATGACTCTGTAAACAGTGTAAGTTTGTTTTCTACCATTAGTCTCAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGACTCTGTAAACAGTGTAAGTTTGTTTTCTACCATTAGTCTCAA  683

seq1  TCAAGGAATCCACATGCAGAAGAAAAAACACAAGCGAAATGCAGAATTTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAATCCACATGCAGAAGAAAAAACACAAGCGAAATGCAGAATTTG  733

seq1  AGAAGGTTTTTGTTTCTAAACATAAAGACATGGTGAAACAAAAAAATACT  792
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAGGTTTTTGTTTCTAAACATAAAGACATGGTGAAACGAAAAAATACT  783

seq1  GGAGTGAACCCTTACAAATGCAGTGAATTTCACAAATATCTTACCCAGAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAACCCTTACAAATGCAGTGAATTTCACAAATATCTTACCCAGAG  833

seq1  AGAAAAACTTCAAACTCAGCAGAGAATTTATCATGGAAAGAAACCTTACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTTCAAACTCAGCAGAGAATTTATCATGGAAAGAAACCTTACA  883

seq1  AAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGATCCATCTTAGAAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGATCCATCTTAGAAGT  933

seq1  CATCAGGGAATTCATACAGGAGAGAAACCTCACAAATGTAGTGAATGTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGAATTCATACAGGAGAGAAACCTCACAAATGTAGTGAATGTGA  983

seq1  CAAATGCTTTACCCACAAATTTAATTTGAGAGCTCATCAGAGAATTCATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTACCCACAAATTTAATTTGAGAGCTCATCAGAGAATTCATA  1033

seq1  CGGGAGAGAAACTTTACAAATGTAGTGAATGTGACAAATGCTTTACTCAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGAGAAACTTTACAAATGTAGTGAATGTGACAAATGCTTTACTCAC  1083

seq1  AAATCCCGTCTTAATTATCATCAGAGAATTC  1123
      |||||||||||||||||||||||||||||||
seq2  AAATCCCGTCTTAATTATCATCAGAGAATTC  1114