BAC Information

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BAC

Clone NameB6Ng01-143P16
Chromosome4 (Build37)
Map Location 87,282,608 - 87,418,509
singlet/doubletdoublet
Overlap geneMllt3
Upstream geneAdfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143P16.bB6Ng01-143P16.g
ACCDH941774DH941775
length1,1681,055
definitionDH941774|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P16, 5' end.DH941775|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,417,317 - 87,418,509)(87,282,608 - 87,283,661)
sequence
gaattcagagttaggacagccaactttccaagttgttaccagagctcaac
tgaaaagaaaaggaatgaagaagacttctggatccaaagccttaagagag
tctacgtgtgctaacagcctagtgtcccccacatctgttcccacaacaga
tgctgtcctttcattcagagattaactagtgtctgtacagaaaatggtct
tccggacccgttctttcaagcggtgatgtaaatgcagattaataatggag
tggtttctgcattttaaaaaggagatttttttacactgtttctttctatc
caaagaaactattttttttcttttttaaaaaaaaaatgataaaacagcca
tggtctttgtagattgcgttcctgcagtgtcctcctcgaggagcaggatc
cacattttcaagaatgtcctgactcctcgtgacgatgggcatgagccgta
cttgaagcatttggtgtgtagtcctcttcttggtgtgcagttgcatagat
acgtatcctgtcattttggacagtaggtggttggtgaacggtgtgttttt
agttgtgtttcatttctaacttcacaggtgaaaagagacaatgtttcaac
attcagaaacctttttaaatttctatctgcaattccacatactctcatta
aactaaaaaagtaagtggtttaactaatgtttctgtataatttaatgaga
agcaatgcagtttgggccatttttatttttataaccaaattgagtgatga
aatatatgctttggcttcttttattcctaaagttacaaaacccaagaaac
taagataagaaagtatcccccctcttcatgcccaaagaaataaaatttaa
gagaggggtaagaagaaaggcagctattgtaatgataacattagagctag
aaaattagctaatgcagatgtctcagtatatcatgaaatgtaagtttgta
catgggtaacaaattcagaacactactctaactgacagcaaatttcctgt
aaacgtttctgcagctaagagtcatgctgagagtcagtcttcaatgtcct
cctgctctagcaatgaaccggaaaatacagaagcatgattccctcagctc
caccgaggatgtccccatttcttagacagcagacaactccggccacatct
agggactcactcttggac
gaattcctgctcatatggcaaagcagaggcccaaatcagacagaaacata
gactctactcctgtctagagcccagcactcctggttcatggagccctggg
atctgacctcagcatcttttttgaaaaatgagctgccttcagataatcca
ttgtgaacacgtatttccgcagtatctacaggactgaaaggctcagcatg
agccaaggacagaagaatagaatggggagcgtggtaatggaccctagcct
tgcttcattctaaccctaaagtccatgagtaatgtctaatgtgttaacat
gttatgaatgcaggactctctccctctccaaacctccctcttcccctctt
ccctcttgtgtgtgtgtgtgtccgtgtgtgtgtgtgtgtccgtgtgtgtg
tgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtc
tgtcttctcttttgagataatgtcatactatggagaccaggctagccaga
atgaagagtgaagagggagggtcagaatccagaaagcagacaacatgaat
gtagacacagatgtcagaacaatatgaaaagagaccataagcccagaaat
gagggcagccaccagaagctataaaaggtaaagaaacatgctcccctgga
gctctctcgaaagagccaggcctgccagcacctaggggtgagcgtctgcc
ctccaaaactataggagaacaaattgaagttattttaagtcactaaactt
gtaggaatttgttacagcaatttttggaaaattcatgggtttttcacatt
taatgtaaaattcctttccacaagccaaaaatgtgataacatctggcctg
cccacagccccttacaactggaacaatttttattttccttagaatttttt
tttttaagaaaaatccagaaagggggatacttttcttatggttaaagaga
gcaagaaatggggtctatcttgattttcaaagaatgctgaatttttttgg
cagatttcctactcacaccagaaatacctttccaagcatctttggagctg
acaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87417317_87418509
seq2: B6Ng01-143P16.b_52_1219 (reverse)

seq1  GTCCAAGAGTGAGTGTACATAGATGTGGCAGGAGTGGTCTGCTG-CTAGA  49
      ||||||||||||  || | |||||||||| ||||| |||||||| ||| |
seq2  GTCCAAGAGTGA--GTCCCTAGATGTGGCCGGAGTTGTCTGCTGTCTA-A  47

seq1  GAAATGTGGCACATTCTTTGAGTGGAGCTGAAGGGAATTCATGACTTCTG  99
      |||||| || |||| |  |  ||||||||| |||||| ||||| ||||||
seq2  GAAATG-GGGACATCC--TCGGTGGAGCTG-AGGGAA-TCATG-CTTCTG  91

seq1  TATTTT-CAGATCATGTGCTAAGAGCAGGAGGACCATTTGAAAGACTGAC  148
      |||||| | | |||| |||| |||||||||||| ||||   |||||||||
seq2  TATTTTCCGGTTCAT-TGCT-AGAGCAGGAGGA-CATT--GAAGACTGAC  136

seq1  TCTACAGCATGACTCTTAGCCTGCCAGGAAACGTTTACAGGAAATTTTGC  198
      ||| ||||||||||||||| ||||   ||||||||||||||||| |||||
seq2  TCT-CAGCATGACTCTTAG-CTGC--AGAAACGTTTACAGGAAA-TTTGC  181

seq1  TGTCCAGGTAAGAAGTTAGTTGTTCTGAATTTTGTTACCCATGTACAAAC  248
      ||||   || |||   ||| ||||||||| ||||||||||||||||||||
seq2  TGTC--AGTTAGA--GTAG-TGTTCTGAA-TTTGTTACCCATGTACAAAC  225

seq1  TTACATTTCATGATATACTGAAGACATCTGCATTAGCTAATTTTTCTAGC  298
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TTACATTTCATGATATACTG-AGACATCTGCATTAGCTAA-TTTTCTAGC  273

seq1  TCTAATGTTATCATTACAATAGCTGCCTTTCTTCTTACCCCTCTCTTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTTATCATTACAATAGCTGCCTTTCTTCTTACCCCTCTCTTAAA  323

seq1  TTTTATTTCTTTGGGCATGAAGAGGGGGGATACTTTCTTATCTTAGTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTTTGGGCATGAAGAGGGGGGATACTTTCTTATCTTAGTTTC  373

seq1  TTGGGTTTTGTAACTTTAGGAATAAAAGAAGCCAAAGCATATATTTCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTGTAACTTTAGGAATAAAAGAAGCCAAAGCATATATTTCATC  423

seq1  ACTCAATTTGGTTATAAAAATAAAAATGGCCCAAACTGCATTGCTTCTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTTGGTTATAAAAATAAAAATGGCCCAAACTGCATTGCTTCTCA  473

seq1  TTAAATTATACAGAAACATTAGTTAAACCACTTACTTTTTTAGTTTAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATACAGAAACATTAGTTAAACCACTTACTTTTTTAGTTTAATG  523

seq1  AGAGTATGTGGAATTGCAGATAGAAATTTAAAAAGGTTTCTGAATGTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGTGGAATTGCAGATAGAAATTTAAAAAGGTTTCTGAATGTTGA  573

seq1  AACATTGTCTCTTTTCACCTGTGAAGTTAGAAATGAAACACAACTAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTCTCTTTTCACCTGTGAAGTTAGAAATGAAACACAACTAAAAA  623

seq1  CACACCGTTCACCAACCACCTACTGTCCAAAATGACAGGATACGTATCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCGTTCACCAACCACCTACTGTCCAAAATGACAGGATACGTATCTA  673

seq1  TGCAACTGCACACCAAGAAGAGGACTACACACCAAATGCTTCAAGTACGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGCACACCAAGAAGAGGACTACACACCAAATGCTTCAAGTACGG  723

seq1  CTCATGCCCATCGTCACGAGGAGTCAGGACATTCTTGAAAATGTGGATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCCATCGTCACGAGGAGTCAGGACATTCTTGAAAATGTGGATCC  773

seq1  TGCTCCTCGAGGAGGACACTGCAGGAACGCAATCTACAAAGACCATGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCGAGGAGGACACTGCAGGAACGCAATCTACAAAGACCATGGCT  823

seq1  GTTTTATCATTTTTTTTTTAAAAAAGAAAAAAAATAGTTTCTTTGGATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCATTTTTTTTTTAAAAAAGAAAAAAAATAGTTTCTTTGGATAG  873

seq1  AAAGAAACAGTGTAAAAAAATCTCCTTTTTAAAATGCAGAAACCACTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACAGTGTAAAAAAATCTCCTTTTTAAAATGCAGAAACCACTCCA  923

seq1  TTATTAATCTGCATTTACATCACCGCTTGAAAGAACGGGTCCGGAAGACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATCTGCATTTACATCACCGCTTGAAAGAACGGGTCCGGAAGACC  973

seq1  ATTTTCTGTACAGACACTAGTTAATCTCTGAATGAAAGGACAGCATCTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTACAGACACTAGTTAATCTCTGAATGAAAGGACAGCATCTGT  1023

seq1  TGTGGGAACAGATGTGGGGGACACTAGGCTGTTAGCACACGTAGACTCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAACAGATGTGGGGGACACTAGGCTGTTAGCACACGTAGACTCTC  1073

seq1  TTAAGGCTTTGGATCCAGAAGTCTTCTTCATTCCTTTTCTTTTCAGTTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTTTGGATCCAGAAGTCTTCTTCATTCCTTTTCTTTTCAGTTGA  1123

seq1  GCTCTGGTAACAACTTGGAAAGTTGGCTGTCCTAACTCTGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTAACAACTTGGAAAGTTGGCTGTCCTAACTCTGAATTC  1168

seq1: chr4_87282608_87283661
seq2: B6Ng01-143P16.g_69_1123

seq1  GAATTCCTGCTCATATGGCAAAGCAGAGGCCCAAATCAGACAGAAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCATATGGCAAAGCAGAGGCCCAAATCAGACAGAAACATA  50

seq1  GACTCTACTCCTGTCTAGAGCCCAGCACTCCTGGTTCATGGAGCCCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACTCCTGTCTAGAGCCCAGCACTCCTGGTTCATGGAGCCCTGGG  100

seq1  ATCTGACCTCAGCATCTTTTTTGAAAAATGAGCTGCCTTCAGATAATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCTCAGCATCTTTTTTGAAAAATGAGCTGCCTTCAGATAATCCA  150

seq1  TTGTGAACACGTATTTCCGCAGTATCTACAGGACTGAAAGGCTCAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACACGTATTTCCGCAGTATCTACAGGACTGAAAGGCTCAGCATG  200

seq1  AGCCAAGGACAGAAGAATAGAATGGGGAGCGTGGTAATGGACCCTAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGACAGAAGAATAGAATGGGGAGCGTGGTAATGGACCCTAGCCT  250

seq1  TGCTTCATTCTAACCCTAAAGTCCATGAGTAATGTCTAATGTGTTAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATTCTAACCCTAAAGTCCATGAGTAATGTCTAATGTGTTAACAT  300

seq1  GTTATGAATGCAGGACTCTCTCCCTCTCCAAACCTCCCTCTTCCCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAATGCAGGACTCTCTCCCTCTCCAAACCTCCCTCTTCCCCTCTT  350

seq1  CCCTCTTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTCCGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTCCGTGTGTGTG  400

seq1  TGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC  450

seq1  TGTCTTCTCTTTTGAGATAATGTCATACTATGGAGACCAGGCTAGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCTTTTGAGATAATGTCATACTATGGAGACCAGGCTAGCCAGA  500

seq1  ATGAAGAGTGAAGAGGGAGGGTCAGAATCCAGAAAGCAGACAACATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGTGAAGAGGGAGGGTCAGAATCCAGAAAGCAGACAACATGAAT  550

seq1  GTAGACACAGATGTCAGAACAATATGAAAAGAGACCATAAGCCCAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACACAGATGTCAGAACAATATGAAAAGAGACCATAAGCCCAGAAAT  600

seq1  GAGGGCAGCCACCAGAAGCTATAAAAGGTAAAGAAACATGCTCCCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGCCACCAGAAGCTATAAAAGGTAAAGAAACATGCTCCCCTGGA  650

seq1  GCTCTCTCGAAAGAGCCAGGCCTGCCAGCACCTAGGGGTGAGCGTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCGAAAGAGCCAGGCCTGCCAGCACCTAGGGGTGAGCGTCTGCC  700

seq1  CTCCAAAACTATAGGAGAACAAATTGAAGTTATTTTAAGTCACTAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAACTATAGGAGAACAAATTGAAGTTATTTTAAGTCACTAAACTT  750

seq1  GTAGGAATTTGTTACAGCAA-TTTTGGAAAATTCATGGGTTTTTCACA-T  798
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GTAGGAATTTGTTACAGCAATTTTTGGAAAATTCATGGGTTTTTCACATT  800

seq1  TAATGTAAAATTCCTTTCCACAAGCCAAAAATGTGATAACATCTGGCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAAATTCCTTTCCACAAGCCAAAAATGTGATAACATCTGGCCTG  850

seq1  CCCACAGCCCCATACAACCTGAACAATTTTTATTTCCATCAGA--TTTTT  896
      ||||||||||| ||||||  ||||||||||||||| | | |||  |||||
seq2  CCCACAGCCCCTTACAACTGGAACAATTTTTATTTTCCTTAGAATTTTTT  900

seq1  TTTTTTAGAAAATTCCAGAAAGGGGGATAC-TTTCTTATGGGTAAAAGAG  945
      ||||| |||||| ||||||||||||||||| |||||||| ||| ||||||
seq2  TTTTTAAGAAAAATCCAGAAAGGGGGATACTTTTCTTAT-GGTTAAAGAG  949

seq1  AGCAAGAAATGGGTTCTATCTTGATTTTCAAAAGATGCTGAATTTTTTTG  995
      ||||||||||||| ||||||||||||||||||  ||||||||||||||| 
seq2  AGCAAGAAATGGGGTCTATCTTGATTTTCAAAGAATGCTGAATTTTTTT-  998

seq1  GGCAGATTTCCTACTCTACACAAG-AATACTTTTCCAAAGGCATC-TTGG  1043
      |||||||||||||||| |||| || ||||| |||||||  ||||| ||||
seq2  GGCAGATTTCCTACTC-ACACCAGAAATACCTTTCCAA--GCATCTTTGG  1045

seq1  AGCCTGACACC  1054
      || |||||| |
seq2  AG-CTGACAAC  1055