BAC Information

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BAC

Clone NameB6Ng01-144H24
Chromosome4 (Build37)
Map Location 57,236,648 - 57,428,501
singlet/doubletdoublet
Overlap genePtpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b
Downstream geneLOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144H24.bB6Ng01-144H24.g
ACCDH942163DH942164
length1,085480
definitionDH942163|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H24, 5' end.DH942164|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,236,648 - 57,237,741)(57,428,016 - 57,428,501)
sequence
gaattcaggaaggttttacgggaggatcaatcacgggggttggggacccc
ttttggaattctagggcacactgctgactcctctttacccagaagcatat
cctgacattcccatcacctgaactgaagatgcccttggaaaaaaacattt
cctggaaaagaatgtgtgcttacttcttcaaaagaggaggcacaagacct
caggaagggccatgtgcactgggatgctccccgtgtgagcagagctctag
agggcaggtagccagcaggggcagtctgctcactgcgcaggagtgggggt
acagaaggagtacagaggtgggcgagggaatgggcatgagagagacggaa
gttagatgcttcctcgataggtatttaagcagtgtggggaagagggtcct
gaggcagtcacttaaccccaccacccaatccctgaagctgtaatccaatg
ggcacagcacccgtttcaataatgctatatacacaaacagatgggaactg
ggtggtgacagcagtttgcagccactgcctagagggactcattagaccca
gagacttgagctagctgccttcacatatcagctgagcagggctgtatggg
cctggaaataatccctcctgggtgggctgtagctgcatttgatcaccaac
cagacactcaactttctgagccccgggattcctttgtaagatgtgtttaa
cggctgttgtatgctttatttatttccttcattttgagataaggtctcca
tagctctggctggccgtgaacttcatacacagtctaggctgacttagaat
aactggctctgcttattctgagaactcactacaatgacagggatctagtc
ttgcaaatgttgggcacataacaactacataatacgaggcaattgaacta
ctacataaaaagccaggttcttatccctgagtagtttccctttatttatt
tatttattaatttattattcattatattattattagagaaagggtttctc
tgcatagcctggctgtctcctgctgtctgaaactcacttactccactctg
tagacccaggctggccttgacattcagaaatctgg
agtgctcctaaccactgagacatctttccagccctatctgatactcttaa
taatggtcatgaagaaaacaagtaaaaataaagttaattttaaacctcta
gatgacagagcacagaatgcctgggagatgatttctcatgaaaaccagtg
gagaccagcactggagttgagtgggtgtcagacaaagtttctgaagtaga
aagacaggctcagctatgagtggtagggcatgcctttaattccaacattt
gggaggcagaagtgggaaaatatttgtaagtttaagtctagcctgatcta
cataatgagttccaggccagccagagctacaaagtaagaccctgcctcaa
acctacagagtgggaaagaggagagaaaggaaaagagagggggagggagg
ggaccgagacagaaagaggagaaagcttccatcctaggtcagagtgtaac
catgtgggaacatatactgcacaacacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57236648_57237741
seq2: B6Ng01-144H24.b_43_1126

seq1  GAATTCAGGAAGGTTTTACGGGAGGATCAATCACGGGGGTTGGGGACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAGGTTTTACGGGAGGATCAATCACGGGGGTTGGGGACCCC  50

seq1  TTTTGGAATTCTAGGGCACACTGCTGACTCCTCTTTACCCAGAAGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAATTCTAGGGCACACTGCTGACTCCTCTTTACCCAGAAGCATAT  100

seq1  CCTGACATTCCCATCACCTGAACTGAAGATGCCCTTGGAAAAAAACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATTCCCATCACCTGAACTGAAGATGCCCTTGGAAAAAAACATTT  150

seq1  CCTGGAAAAGAATGTGTGCTTACTTCTTCAAAAGAGGAGGCACAAGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAAGAATGTGTGCTTACTTCTTCAAAAGAGGAGGCACAAGACCT  200

seq1  CAGGAAGGGCCATGTGCACTGGGATGCTCCCCGTGTGAGCAGAGCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGCCATGTGCACTGGGATGCTCCCCGTGTGAGCAGAGCTCTAG  250

seq1  AGGGCAGGTAGCCAGCAGGGGCAGTCTGCTCACTGCGCAGGAGTGGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGTAGCCAGCAGGGGCAGTCTGCTCACTGCGCAGGAGTGGGGGT  300

seq1  ACAGAAGGAGTACAGAGGTGGGCGAGGGAATGGGCATGAGAGAGACGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGAGTACAGAGGTGGGCGAGGGAATGGGCATGAGAGAGACGGAA  350

seq1  GTTAGATGCTTCCTCGATAGGTATTTAAGCAGTGTGGGGAAGAGGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGCTTCCTCGATAGGTATTTAAGCAGTGTGGGGAAGAGGGTCCT  400

seq1  GAGGCAGTCACTTAACCCCACCACCCAATCCCTGAAGCTGTAATCCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTCACTTAACCCCACCACCCAATCCCTGAAGCTGTAATCCAATG  450

seq1  GGCACAGCACCCGTTTCAATAATGCTATATACACAAACAGATGGGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGCACCCGTTTCAATAATGCTATATACACAAACAGATGGGAACTG  500

seq1  GGTGGTGACAGCAGTTTGCAGCCACTGCCTAGAGGGACTCATTAGACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACAGCAGTTTGCAGCCACTGCCTAGAGGGACTCATTAGACCCA  550

seq1  GAGACTTGAGCTAGCTGCCTTCACATATCAGCTGAGCAGGGCTGTATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGAGCTAGCTGCCTTCACATATCAGCTGAGCAGGGCTGTATGGG  600

seq1  CCTGGAAATAATCCCTCCTGGGTGGGCTGTAGCTGCATTTGATCACCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATAATCCCTCCTGGGTGGGCTGTAGCTGCATTTGATCACCAAC  650

seq1  CAGACACTCAACTTTCTGAGCCCCGGGATTCCTTTGTAAGATGTGTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTCAACTTTCTGAGCCCCGGGATTCCTTTGTAAGATGTGTTTAA  700

seq1  CGGCTGTTGTATGCTTTATTTATTTCCTTCATTTTGAGATAAGGTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGTTGTATGCTTTATTTATTTCCTTCATTTTGAGATAAGGTCTCCA  750

seq1  TAGCTCTGGCTGGCCGTGAACTTCATACACAGTCTAGGCTGACTTAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGGCTGGCCGTGAACTTCATACACAGTCTAGGCTGACTTAGAAT  800

seq1  AAACTGGCTCTGCTTATTCTGAGAACTCACTACAATGACAGGGATCTAGT  850
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACTGGCTCTGCTTATTCTGAGAACTCACTACAATGACAGGGATCTAGT  849

seq1  CTTGCAAATGTTGGGCACATAACAACTACATAATACGAGGCAATTGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAATGTTGGGCACATAACAACTACATAATACGAGGCAATTGAACT  899

seq1  ACTACATAAAAAGCCA-GTTCTTATCCCTGAGTAGTTTCCCTTTATTTAT  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTACATAAAAAGCCAGGTTCTTATCCCTGAGTAGTTTCCCTTTATTTAT  949

seq1  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGAGACA  999
      ||||||||| |||||     ||||| ||   | ||||  | || |||| |
seq2  TTATTTATTAATTTA-----TTATTCAT---TATATTATTATTAGAGAAA  991

seq1  GGGTTTCTCTGCATAGCCCTGGCTGTCCTCCTGGCTGTCCTGGAACTCAC  1049
      |||||||||||||||| ||||||||| ||||| ||||| ||| |||||||
seq2  GGGTTTCTCTGCATAG-CCTGGCTGT-CTCCT-GCTGT-CTGAAACTCAC  1037

seq1  TTAACTCACTCTGTAGA-CCAGGCTGGCCTTGA-ACTCAGAAATCTG  1094
      |||   ||||||||||| ||||||||||||||| | |||||||||||
seq2  TTACTCCACTCTGTAGACCCAGGCTGGCCTTGACATTCAGAAATCTG  1084

seq1: chr4_57428016_57428501
seq2: B6Ng01-144H24.g_67_552 (reverse)

seq1  ACTGTGTTGTGCAGTATCTGTTCCCACATGGTTGCACTCTGACCTTGGCT  50
      ||||||||||||||||| ||||||||||||||| ||||||||||| || |
seq2  ACTGTGTTGTGCAGTATATGTTCCCACATGGTTACACTCTGACCTAGGAT  50

seq1  GGTAGGTTTCTCCTCTTTCTGTCTCTGTCCCCTCCCTCCCCCTCTCTTTT  100
      || || ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAAGCTTTCTCCTCTTTCTGTCTCGGTCCCCTCCCTCCCCCTCTCTTTT  100

seq1  CCTTTCTCTCCTCTTTCCCACTCTGTAGGTTTGAGGCAGGGTCTTACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTCCTCTTTCCCACTCTGTAGGTTTGAGGCAGGGTCTTACTTT  150

seq1  GTAGCTCTGGCTGGCCTGGAACTCATTATGTAGATCAGGCTAGACTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGGCTGGCCTGGAACTCATTATGTAGATCAGGCTAGACTTAAA  200

seq1  CTTACAAATATTTTCCCACTTCTGCCTCCCAAATGTTGGAATTAAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATATTTTCCCACTTCTGCCTCCCAAATGTTGGAATTAAAGGCA  250

seq1  TGCCCTACCACTCATAGCTGAGCCTGTCTTTCTACTTCAGAAACTTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTACCACTCATAGCTGAGCCTGTCTTTCTACTTCAGAAACTTTGTC  300

seq1  TGACACCCACTCAACTCCAGTGCTGGTCTCCACTGGTTTTCATGAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCCACTCAACTCCAGTGCTGGTCTCCACTGGTTTTCATGAGAAAT  350

seq1  CATCTCCCAGGCATTCTGTGCTCTGTCATCTAGAGGTTTAAAATTAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCAGGCATTCTGTGCTCTGTCATCTAGAGGTTTAAAATTAACTT  400

seq1  TATTTTTACTTGTTTTCTTCATGACCATTATTAAGAGTATCAGATAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACTTGTTTTCTTCATGACCATTATTAAGAGTATCAGATAGGGC  450

seq1  TGGAAAGATGTCTCAGTGGTTAGGAGCACTGAATTC  486
      ||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATGTCTCAGTGGTTAGGAGCACTGAATTC  486