BAC Information

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BAC

Clone NameB6Ng01-144M08
Chromosome4 (Build37)
Map Location 89,908,608 - 90,027,294
singlet/doubletdoublet
Overlap geneLOC619842
Upstream geneCdkn2a, Cdkn2b, LOC664785, Dmrta1, Zfp352
Downstream geneLOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144M08.bB6Ng01-144M08.g
ACCDH942357DH942358
length1,186695
definitionDH942357|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M08, 5' end.DH942358|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,026,098 - 90,027,294)(89,908,608 - 89,909,302)
sequence
gaattctttcagagatcagcagagtaaaccagcagctgataatggattct
atggagatcaagtgatatcgccaaatggataccaggctttctgtgagctt
caaatgagagctaactatgaccaaacaaatgaccaaatgaattccttcag
tggtcagaatgtctgcaaagatcaggagaatctcctcattggtgatcact
ccctctctgagtatcagacatcaggctacagatgtgaccaggatttaatt
gtgaattcccaggtgacaagtccatttggtggccagcctctctctgattt
tcagataccaacctccagttttgacacaactcttcatgggtctaagagga
caagatctagtgcagaagacaacctggcttgccctttggagacaagtccc
agttctgaagaaacattctacttgggtcagatgaggacctctattgatca
agatgtttacccaagtcagaatggaacactcaatattgaagaaagccttg
attctcagatgacttcacttagttaccaagttccatatgtcggtgaatcc
tcatatccttcaagttcccctttgatcgatccaaagtcaacctcaggaaa
actcttcagcttccaatctagtccagggacagcatccagagatgaagtta
gacctcaatccccagagccctatgtgccagaagaaccctcatcctttgag
tgctactcctgtacctatgcgaactgtcagaaatcttacaaaagggctca
acacctcgaagaacacatgaagaaacacactggtgagaagccttatgcat
gcaataagcctgggtgcacatggaaaatctcctgctcaaaagatctcaag
agacacaaacaaaagcacagtgtggtgaggccctacccatgtcccaggtg
caacaaaaactttgccagattggagtacttaagcagcacgtgaggtgcat
attgaagcatcattccccactgcaacttgattgtcacaaataatatcttc
ccctaacaaaactcattgtctcttacctgtagcatcaggagtcagtttca
gatagcctctgaatcagggatatgttattccttggggcaaggacttcttg
tgtctgtgccatggctaccacaaccagtactaaggtacctcctcactatg
tgccacgtatcccccattcttatttgacatctatgt
gaattccagggcagggtaggcaggagtgggtgggggagcactctcacaga
agcagggggaaggaggatgggaaagagggtttctagagaggaaaccagga
aaggaaataacatttgaaatggaaataaatgaaatatccaataaaatata
aaaagcttactttgtgcattctatgctatttctcttgaattgtatttact
atgaaattttaagaattttctataaataaatagatgaattcctatttaaa
aactgaagagaaagaaaatatatacatagaagaaatatatttgagatatt
tatatttttattgcagttttttttttcctggaataaaaagactcatttta
aacagagagtgccacggtaaataaaacacaaataatatacaggcagagca
gtgatgcaggagattgcctttcagcccaaagcttcatcagtgttaaagtg
ctgattccaggagggaagtagagctgccttgccatattaaatatgaacac
tacatagttctgcccttgtaaaaataggtcaggcttcaaaagagacattt
ttatgctcaaacttacaaaacaattctcatgggtgttgtttttgcttact
tagttttagctgcatttactccatgtgaaatttgaaagatttaggggact
agctggaggtagagtctttttggctaatgctgctctattctcgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90026098_90027294
seq2: B6Ng01-144M08.b_45_1230 (reverse)

seq1  ACATAGATGTCAAATAATGAATGGTGGGTACCGTTGCACATAGGTGAGGA  50
      ||||||||||||||||| |||||| || || ||| ||||||| |||||||
seq2  ACATAGATGTCAAATAA-GAATGGGGGATA-CGTGGCACATA-GTGAGGA  47

seq1  -GTACTTTAGTACTGTGTTGTGGTAGCCATGGCAACAGACACAAGAAGGT  99
       |||| ||||||||| ||||||||||||||||| ||||||||||||| ||
seq2  GGTACCTTAGTACTG-GTTGTGGTAGCCATGGC-ACAGACACAAGAA-GT  94

seq1  CCTTGGCCCCAGGGATAACATTATCCCTGGATTCAGAGGCTATCTGGAAA  149
      ||||| ||| ||| |||||| ||||||| |||||||||||||||| ||||
seq2  CCTTGCCCCAAGGAATAACA-TATCCCT-GATTCAGAGGCTATCT-GAAA  141

seq1  CTGACT-CTGATGCTAACAGGTAAGAGACAATGAAGTTTTGTTAGGGG-A  197
      |||||| |||||||| ||||||||||||||||| |||||||||||||| |
seq2  CTGACTCCTGATGCT-ACAGGTAAGAGACAATG-AGTTTTGTTAGGGGAA  189

seq1  GATATTATTTGTGGACAATCAGGTTGCAGTGGGGAATGATGCTTCAATAT  247
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GATATTATTTGT-GACAATCAAGTTGCAGTGGGGAATGATGCTTCAATAT  238

seq1  GGCACCTCACGTGCTGCTTAAGGTACTCCAATCTGGCAAAGTTTTTGTTG  297
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -GCACCTCACGTGCTGCTTAA-GTACTCCAATCTGGCAAAGTTTTTGTTG  286

seq1  CACCTGGGACATGGGTAGGGCCTCACCACACTGTGCTTTTGTTTGTGTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGACATGGGTAGGGCCTCACCACACTGTGCTTTTGTTTGTGTCT  336

seq1  CTTGAGATCTTTTGAGCAGGAGATTTTCCATGTGCACCCAGGCTTATTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATCTTTTGAGCAGGAGATTTTCCATGTGCACCCAGGCTTATTGC  386

seq1  ATGCATAAGGCTTCTCACCAGTGTGTTTCTTCATGTGTTCTTCGAGGTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAGGCTTCTCACCAGTGTGTTTCTTCATGTGTTCTTCGAGGTGT  436

seq1  TGAGCCCTTTTGTAAGATTTCTGACAGTTCGCATAGGTACAGGAGTAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTTTTGTAAGATTTCTGACAGTTCGCATAGGTACAGGAGTAGCA  486

seq1  CTCAAAGGATGAGGGTTCTTCTGGCACATAGGGCTCTGGGGATTGAGGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGATGAGGGTTCTTCTGGCACATAGGGCTCTGGGGATTGAGGTC  536

seq1  TAACTTCATCTCTGGATGCTGTCCCTGGACTAGATTGGAAGCTGAAGAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCATCTCTGGATGCTGTCCCTGGACTAGATTGGAAGCTGAAGAGT  586

seq1  TTTCCTGAGGTTGACTTTGGATCGATCAAAGGGGAACTTGAAGGATATGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGGTTGACTTTGGATCGATCAAAGGGGAACTTGAAGGATATGA  636

seq1  GGATTCACCGACATATGGAACTTGGTAACTAAGTGAAGTCATCTGAGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCACCGACATATGGAACTTGGTAACTAAGTGAAGTCATCTGAGAAT  686

seq1  CAAGGCTTTCTTCAATATTGAGTGTTCCATTCTGACTTGGGTAAACATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTTCTTCAATATTGAGTGTTCCATTCTGACTTGGGTAAACATCT  736

seq1  TGATCAATAGAGGTCCTCATCTGACCCAAGTAGAATGTTTCTTCAGAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATAGAGGTCCTCATCTGACCCAAGTAGAATGTTTCTTCAGAACT  786

seq1  GGGACTTGTCTCCAAAGGGCAAGCCAGGTTGTCTTCTGCACTAGATCTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGTCTCCAAAGGGCAAGCCAGGTTGTCTTCTGCACTAGATCTTG  836

seq1  TCCTCTTAGACCCATGAAGAGTTGTGTCAAAACTGGAGGTTGGTATCTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTAGACCCATGAAGAGTTGTGTCAAAACTGGAGGTTGGTATCTGA  886

seq1  AAATCAGAGAGAGGCTGGCCACCAAATGGACTTGTCACCTGGGAATTCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAGAGAGGCTGGCCACCAAATGGACTTGTCACCTGGGAATTCAC  936

seq1  AATTAAATCCTGGTCACATCTGTAGCCTGATGTCTGATACTCAGAGAGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATCCTGGTCACATCTGTAGCCTGATGTCTGATACTCAGAGAGGG  986

seq1  AGTGATCACCAATGAGGAGATTCTCCTGATCTTTGCAGACATTCTGACCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCACCAATGAGGAGATTCTCCTGATCTTTGCAGACATTCTGACCA  1036

seq1  CTGAAGGAATTCATTTGGTCATTTGTTTGGTCATAGTTAGCTCTCATTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAATTCATTTGGTCATTTGTTTGGTCATAGTTAGCTCTCATTTG  1086

seq1  AAGCTCACAGAAAGCCTGGTATCCATTTGGCGATATCACTTGATCTCCAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACAGAAAGCCTGGTATCCATTTGGCGATATCACTTGATCTCCAT  1136

seq1  AGAATCCATTATCAGCTGCTGGTTTACTCTGCTGATCTCTGAAAGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCATTATCAGCTGCTGGTTTACTCTGCTGATCTCTGAAAGAATTC  1186

seq1: chr4_89908608_89909302
seq2: B6Ng01-144M08.g_67_761

seq1  GAATTCCAGGGCAGGGTAGGCAGGAGTGGGTGGGGGAGCACTCTCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCAGGGTAGGCAGGAGTGGGTGGGGGAGCACTCTCACAGA  50

seq1  AGCAGGGGGAAGGAGGATGGGAAAGAGGGTTTCTAGAGAGGAAACCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGGAAGGAGGATGGGAAAGAGGGTTTCTAGAGAGGAAACCAGGA  100

seq1  AAGGAAATAACATTTGAAATGGAAATAAATGAAATATCCAATAAAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAACATTTGAAATGGAAATAAATGAAATATCCAATAAAATATA  150

seq1  AAAAGCTTACTTTGTGCATTCTATGCTATTTCTCTTGAATTGTATTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTACTTTGTGCATTCTATGCTATTTCTCTTGAATTGTATTTACT  200

seq1  ATGAAATTTTAAGAATTTTCTATAAATAAATAGATGAATTCCTATTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTTAAGAATTTTCTATAAATAAATAGATGAATTCCTATTTAAA  250

seq1  AACTGAAGAGAAAGAAAATATATACATAGAAGAAATATATTTGAGATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGAGAAAGAAAATATATACATAGAAGAAATATATTTGAGATATT  300

seq1  TATATTTTTATTGCAGTTTTTTTTTTCCTGGAATAAAAAGACTCATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTATTGCAGTTTTTTTTTTCCTGGAATAAAAAGACTCATTTTA  350

seq1  AACAGAGAGTGCCACGGTAAATAAAACACAAATAATATACAGGCAGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGTGCCACGGTAAATAAAACACAAATAATATACAGGCAGAGCA  400

seq1  GTGATGCAGGAGATTGCCTTTCAGCCCAAAGCTTCATCAGTGTTAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCAGGAGATTGCCTTTCAGCCCAAAGCTTCATCAGTGTTAAAGTG  450

seq1  CTGATTCCAGGAGGGAAGTAGAGCTGCCTTGCCATATTAAATATGAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCAGGAGGGAAGTAGAGCTGCCTTGCCATATTAAATATGAACAC  500

seq1  TACATAGTTCTGCCCTTGTAAAAATAGGTCAGGCTTCAAAAGAGACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTTCTGCCCTTGTAAAAATAGGTCAGGCTTCAAAAGAGACATTT  550

seq1  TTATGCTCAAACTTACAAAACAATTCTCATGGGTGTTG-TTTTGCTTACT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTATGCTCAAACTTACAAAACAATTCTCATGGGTGTTGTTTTTGCTTACT  600

seq1  TAGTTTTAGCTGCATTTACTCCATGTGAAATTTGAAAGATTTAGGGGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAGCTGCATTTACTCCATGTGAAATTTGAAAGATTTAGGGGACT  650

seq1  AGCTGGAGGCAGAAGTCATCATGGCTAATGCAGCTCTATTCTCGCT  695
      ||||||||| || |||| |  |||||||||| ||||||||||||||
seq2  AGCTGGAGGTAG-AGTCTTTTTGGCTAATGCTGCTCTATTCTCGCT  695